Ecosyste.ms: Issues

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GitHub / nci-gdc/gatk4_mutect2_cwl issues and pull requests

#32 - add memory limit to each step

Pull Request - State: closed - Opened by sxwcasd 6 months ago

#31 - update docker which fix gatk path

Pull Request - State: closed - Opened by Shenglai 8 months ago

#30 - update docker image

Pull Request - State: closed - Opened by Shenglai 8 months ago

#29 - Openstack2 update

Pull Request - State: closed - Opened by Shenglai 9 months ago

#28 - update docker tag

Pull Request - State: closed - Opened by Shenglai 9 months ago

#27 - update bioclient cwl

Pull Request - State: closed - Opened by sxwcasd over 1 year ago

#26 - chore: update docker tag

Pull Request - State: closed - Opened by Shenglai over 1 year ago

#25 - Chore/gitlab

Pull Request - State: closed - Opened by czyszCTDS over 1 year ago

#24 - chore: update readme

Pull Request - State: closed - Opened by Shenglai almost 2 years ago

#23 - update tumor only parameter

Pull Request - State: closed - Opened by Shenglai about 2 years ago

#22 - BINF-584: update docker tag

Pull Request - State: closed - Opened by Shenglai over 2 years ago

#21 - Update base gatk4-mutect2-tool Docker images

Pull Request - State: closed - Opened by czyszCTDS over 2 years ago

#20 - [BINF-687] Update tool CWL to use new docker

Pull Request - State: closed - Opened by czyszCTDS over 2 years ago - 1 comment

#19 - BINF-494: add individual pon workflow

Pull Request - State: closed - Opened by Shenglai almost 3 years ago

#18 - BINF-653: fix FilterAlignmentArtifacts step

Pull Request - State: closed - Opened by Shenglai almost 3 years ago

#17 - BINF-608: log4j patch and dockerize workflow

Pull Request - State: closed - Opened by Shenglai about 3 years ago

#16 - 4.1.3: fix tumor only wf path

Pull Request - State: closed - Opened by Shenglai almost 4 years ago

#15 - 4.1.3: fix filename

Pull Request - State: closed - Opened by Shenglai almost 4 years ago

#14 - 4.1.3: fix exec path

Pull Request - State: closed - Opened by Shenglai almost 4 years ago

#13 - feat(4.1.3): bump version to fix contamination issue

Pull Request - State: closed - Opened by Shenglai almost 4 years ago

#12 - fix(graph): fix mapping to gdc graphmanager

Pull Request - State: closed - Opened by Shenglai over 5 years ago

#11 - chore(gpas): update new workflow uuid

Pull Request - State: closed - Opened by Shenglai over 5 years ago

#10 - feat(vcf): add pysam script to modify vcf sample tag

Pull Request - State: closed - Opened by Shenglai over 5 years ago

#9 - chore(gpas): add biojss test input jsons

Pull Request - State: closed - Opened by Shenglai over 5 years ago

#8 - BINF[258]: major update for gatk4 mutect2

Pull Request - State: closed - Opened by Shenglai over 5 years ago

#7 - fix(awk): fix awk command that skips chr10 and 20

Pull Request - State: closed - Opened by Shenglai over 6 years ago

#5 - Feat/cond wf

Pull Request - State: closed - Opened by Shenglai over 6 years ago - 1 comment

#4 - chore(style): use suffix more related to dictionary

Pull Request - State: closed - Opened by Shenglai over 6 years ago

#2 - fix(picard): use legacy docker tag

Pull Request - State: closed - Opened by Shenglai over 6 years ago

#1 - Feat(automation): mutect2 tumor only workflow for biowcs

Pull Request - State: closed - Opened by Shenglai over 6 years ago