mapping-commons/sssom issues and pull requests

#284 - Minor fix to the “overview” document regarding the TSV format

Pull Request - State: closed - Opened by gouttegd over 1 year ago

#283 - Issues with the specification “overview”

Issue - State: closed - Opened by gouttegd over 1 year ago - 6 comments

#282 - Ensure file name convention is always .sssom.tsv

Issue - State: closed - Opened by matentzn over 1 year ago - 1 comment

#281 - How should subject_match_field and object_match_field be populated for inverse matches

Issue - State: open - Opened by cmungall over 1 year ago - 1 comment

#280 - minor improvements to some text and formatting

Pull Request - State: closed - Opened by nlharris over 1 year ago - 3 comments

#279 - Fix typo in schema

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#278 - Add Java data classes to SSSOM build

Issue - State: open - Opened by matentzn over 1 year ago

#277 - Cookiecutter directions for new project generation

Pull Request - State: closed - Opened by hrshdhgd over 1 year ago - 3 comments

#276 - Docs: Mapping set general & version IRIs

Issue - State: open - Opened by joeflack4 over 1 year ago - 2 comments

#275 - Create concept_set.sssom.tsv (a first draft for representing concept sets)

Pull Request - State: closed - Opened by matentzn over 1 year ago - 1 comment

#274 - Add link to contextualize "drive-by curation"

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#273 - Document how to create a new mapping commons using cookiecutter

Issue - State: closed - Opened by matentzn over 1 year ago - 5 comments

#270 - SSSOM 0.11.1 release

Pull Request - State: closed - Opened by matentzn over 1 year ago - 5 comments

#269 - Making adding a link to a working example required when adding a new field

Pull Request - State: closed - Opened by matentzn over 1 year ago - 1 comment

#268 - Adding QC checks for example SSSOM files

Pull Request - State: closed - Opened by matentzn over 1 year ago

#267 - Add some examples of using see_also to SSSOM schema

Pull Request - State: closed - Opened by matentzn over 1 year ago - 2 comments

#266 - Make adding a concrete SSSOM example part of the new element request

Pull Request - State: closed - Opened by matentzn over 1 year ago - 3 comments

#265 - Add FAQ: Why do we allow Object Prroperties and OWL axioms as mapping predicates?

Issue - State: open - Opened by matentzn over 1 year ago

#264 - Adding mapping registry convenience fields to the SSSOM data model

Pull Request - State: open - Opened by matentzn over 1 year ago

#263 - Experimental: defining "extension" slot as a list of key-value pairs

Pull Request - State: closed - Opened by matentzn over 1 year ago - 1 comment

#262 - Update description on `other` slot

Issue - State: open - Opened by anitacaron over 1 year ago - 1 comment

#261 - Add inversion rules for SEMAPV cross-species predicates.

Pull Request - State: closed - Opened by gouttegd over 1 year ago

#260 - Minimal spec - The 'Simple' part of the SSS

Issue - State: open - Opened by joeflack4 over 1 year ago - 3 comments

#259 - Add issue tracker item to SSSOM datamodel

Pull Request - State: closed - Opened by matentzn over 1 year ago - 9 comments

#258 - Add curation_rule to SSSOM

Pull Request - State: closed - Opened by matentzn over 1 year ago - 23 comments

#257 - Improve documentation for subject and object categories

Pull Request - State: closed - Opened by matentzn over 1 year ago - 4 comments

#256 - how to use subject_category and object_category?

Issue - State: closed - Opened by saubin78 over 1 year ago - 3 comments

#255 - using EntityTypeEnum with subject_type and object_type

Issue - State: open - Opened by saubin78 over 1 year ago - 1 comment

#254 - Documentation is not enjoyable to read

Issue - State: open - Opened by cthoyt over 1 year ago - 4 comments
Labels: documentation

#253 - `mapping_justification` for automated mappings

Issue - State: open - Opened by a-chahin over 1 year ago - 1 comment

#252 - Update SSSOM talks 2022 in docs

Pull Request - State: closed - Opened by matentzn over 1 year ago - 4 comments

#251 - Review N3Cs use of SSSOM

Issue - State: open - Opened by matentzn over 1 year ago

#249 - Align with JSKOS data format

Issue - State: open - Opened by nichtich over 1 year ago - 4 comments

#248 - Document the design difference between `confidence` and `similarity_score`

Issue - State: open - Opened by rsgoncalves almost 2 years ago - 3 comments

#247 - Define a standard sort order for SSSOM files

Issue - State: closed - Opened by cthoyt almost 2 years ago - 7 comments

#246 - Defining implementers versus authors of maps

Issue - State: open - Opened by DaveraGabriel almost 2 years ago - 1 comment

#245 - Expressing "Out of Scope" where the source concept is out of scope for the target vocabulary

Issue - State: open - Opened by tompollard almost 2 years ago - 6 comments

#244 - Remove uri slot from Entity REF

Pull Request - State: closed - Opened by matentzn almost 2 years ago - 6 comments

#243 - Bad Link: usecases.md to MONDO

Issue - State: closed - Opened by croeder almost 2 years ago - 1 comment

#242 - Document chaining rules

Pull Request - State: closed - Opened by matentzn almost 2 years ago - 1 comment

#241 - Conversion to JSON-LD is not working as expected

Issue - State: open - Opened by anitacaron almost 2 years ago - 6 comments

#240 - Add registry title and registry description slots

Pull Request - State: closed - Opened by anitacaron almost 2 years ago

#239 - [New metadata element]: registry description

Issue - State: closed - Opened by anitacaron almost 2 years ago - 2 comments

#238 - [New metadata element]: registry title

Issue - State: closed - Opened by anitacaron almost 2 years ago - 2 comments

#237 - Define SSSOM profile for ValueSet mappings

Issue - State: open - Opened by matentzn almost 2 years ago - 3 comments

#235 - Adding SSSOM profile for literals

Pull Request - State: closed - Opened by matentzn almost 2 years ago - 6 comments

#234 - SSSOM: Separate profile for Literal Mappings

Issue - State: closed - Opened by matentzn almost 2 years ago - 27 comments

#225 - [New metadata element]: `MappingSet.curie_map`

Issue - State: closed - Opened by joeflack4 about 2 years ago - 12 comments

#217 - What do I put in "mapping_justification"?

Issue - State: open - Opened by cthoyt about 2 years ago - 9 comments

#189 - Make SSSOM 1.0 release

Issue - State: closed - Opened by matentzn over 2 years ago - 7 comments

#166 - [New metadata element]: `curation_rule`

Issue - State: closed - Opened by matentzn over 2 years ago - 11 comments

#155 - is there interest in an analog of SSSOM for NER/CR/text annotation?

Issue - State: open - Opened by cmungall over 2 years ago - 15 comments
Labels: discussion

#115 - Add comprehensive testing of changes to SSSOM data model

Issue - State: open - Opened by cmungall almost 3 years ago - 3 comments

#108 - Mapping involving post-coordinated subjects or objects

Issue - State: open - Opened by tudorache almost 3 years ago - 35 comments

#106 - Provenance of mapping review

Issue - State: open - Opened by mellybelly almost 3 years ago - 6 comments

#102 - Review JSON-LD and RDF serialisations

Issue - State: open - Opened by matentzn almost 3 years ago - 13 comments

#79 - Add chain rules for mappings

Issue - State: closed - Opened by cthoyt about 3 years ago

#78 - [New metadata element]: issue_tracker

Issue - State: closed - Opened by matentzn about 3 years ago - 1 comment
Labels: biohackathon-2015-alignment

#68 - [New metadata element]: semantic_similarity_measure

Issue - State: closed - Opened by matentzn about 3 years ago - 1 comment

#43 - Representing data model elements and their values in SSSOM

Issue - State: open - Opened by matentzn almost 4 years ago - 32 comments
Labels: discussion, priority, workshop

#39 - Define canonical sort order

Issue - State: open - Opened by cmungall almost 4 years ago - 2 comments

#36 - Proposal for accommodating complex mappings

Issue - State: closed - Opened by matentzn about 4 years ago - 1 comment
Labels: workshop

#35 - Help with understanding "context"

Issue - State: open - Opened by matentzn about 4 years ago - 4 comments

#30 - Semantic similarity example

Issue - State: closed - Opened by julesjacobsen about 4 years ago - 16 comments
Labels: extension

#28 - How should unmapped elements be indicated?

Issue - State: closed - Opened by cmungall about 4 years ago - 13 comments
Labels: requires-decision, workshop

GitHub / mapping-commons/sssom issues and pull requests