GitHub / cthoyt issue stats
Total issues: 1,206
Total pull requests: 1,894
Merged pull request: 1,661
Average time to close issues: 4 months
Average time to close pull requests: 26 days
Average comments per issue: 0.99
Average comments per pull request: 0.78
Issues created
- biopragmatics/bioregistry: 77
- bel-commons/bel-commons: 77
- pybel/pybel-tools: 75
- pyobo/pyobo: 39
- pybel/pybel: 34
- y0-causal-inference/y0: 33
- bio2bel/expasy: 27
- bio2bel/bio2bel: 26
- ComPath/ComPath: 21
- gyorilab/indra_cogex: 17
- ComPath/compath-resources: 17
- biopragmatics/biomappings: 17
- bio2bel/mirtarbase: 15
- cthoyt/cookiecutter-snekpack: 14
- r-costa/sbml2hyb: 14
- PathwayMerger/PathMe: 13
- mapping-commons/sssom-py: 12
- biopragmatics/bioversions: 12
- linkml/prefixmaps: 12
- pykeen/pykeen: 11
- biopragmatics/pyobo: 11
- bio2bel/interpro: 10
- cthoyt/cthoyt.github.io: 10
- cebel/pyuniprot: 10
- sorgerlab/famplex: 10
- scolby33/easy_config: 10
- Kohulan/DECIMER-Image_Transformer: 10
- AstraZeneca/chemicalx: 9
- biopragmatics/semra: 9
- ndexbio/ndex2-client: 9
- mapping-commons/sssom: 9
- astral-sh/uv: 8
- indralab/gilda: 8
- cthoyt/pystow: 8
- bio2bel/mirbase: 8
- SmartDataAnalytics/BioKEEN: 8
- sorgerlab/indra: 8
- cthoyt/curies: 7
- OpenBioLink/OpenBioLink: 7
- cthoyt/indra-machines: 7
- openjournals/inara: 7
- pathwayforte/pathway-forte: 7
- obofoundry/obo-dashboard: 6
- cthoyt/doctoral-thesis: 6
- lhm30/pidginv3: 6
- drug2ways/drug2ways: 6
- cthoyt/cx-rdf: 6
- bio2bel/hgnc: 6
- bio2bel/chebi: 6
- obofoundry/obofoundry.github.io: 5
- obofoundry/cob: 5
- cthoyt/class-resolver: 5
- bio2bel/kegg: 5
- pykeen/benchmarking: 5
- cebel/pyctd: 5
- AstraZeneca/rexmex: 5
- bio2bel/go: 5
- cthoyt/curies4j: 4
- jose-manuel/npfc: 4
- cthoyt/hetnetana: 4
- bio2bel/drugbank: 4
- cthoyt/orcidio: 4
- althonos/pronto: 4
- ddomingof/bioinformatics-conference-bingo: 4
- MobleyLab/GuthrieSolv: 4
- bio2bel/reactome: 4
- bio2bel/wikipathways: 4
- bel-enrichment/bel-enrichment: 4
- cthoyt/obo-community-health: 4
- biopragmatics/oquat: 4
- ComPath/ComPath-HGNC: 4
- ComPath/ComPath-Utils: 4
- cthoyt/autoreviewer: 4
- pybel/bel-repository: 4
- neurommsig-epilepsy/neurommsig-epilepsy: 3
- biopragmatics/biolookup: 3
- bio2bel/famplex: 3
- bio2bel/mesh: 3
- ratvec/ratvec: 3
- bio2bel/entrez: 3
- cthoyt/dotfiles: 3
- jgm/pandoc: 3
- hetio/hetionet: 3
- bio2bel/uniprot: 3
- cthoyt/selventa-knowledge: 3
- cthoyt/authorship: 3
- KramerChristian/NonadditivityAnalysis: 3
- cthoyt/nx2d3: 3
- biolink/biolink-model: 3
- biopragmatics/biolexica: 3
- ontodev/robot: 3
- geneontology/obographs: 3
- cthoyt/nrl: 3
- cthoyt/chembl-downloader: 2
- dhimmel/obonet: 2
- lambdamusic/Ontospy: 2
- y0-causal-inference/y0-bio: 2
- openjournals/joss: 2
- bgyori/bgyori.github.io: 2
- cthoyt/biocuration-diversity-search: 2
- earth-metabolome-initiative/earth-metabolome-initiative.github.io: 2
- scolby33/pushover_complete: 2
- pybel/pybel-cx: 2
- obofoundry/obo-nor.github.io: 2
- cthoyt/chendi: 2
- planteome/plant-trait-ontology: 2
- monarch-initiative/embiggen: 2
- Knowledge-Graph-Hub/universalizer: 2
- manubot/manubot: 2
- indralab/protmapper: 2
- vemonet/rdflib-endpoint: 2
- RECETOX/RIAssigner: 2
- mberr/torch-max-mem: 2
- gyorilab/adeft: 2
- gyorilab/emmaa: 2
- biopragmatics/curies.rs: 2
- chembl/chembl_webresource_client: 2
- rdkit/homebrew-rdkit: 2
- superraptor/gsso: 2
- monarch-initiative/sepio-ontology: 2
- dmis-lab/bern2: 2
- cthoyt/zenodo-client: 2
- VHRanger/nodevectors: 2
- gbv/bartoc.org: 2
- reymond-group/drfp: 2
- songlab-cal/tape-neurips2019: 2
- biopragmatics/curies: 2
- brenda-enzymes/bto: 2
- cthoyt/nsockg: 2
- cebel/pyhgnc: 2
- AnacletoLAB/grape: 2
- cthoyt/ssslm: 2
- Steinbeck-Lab/cheminformatics-microservice: 2
- rsc-ontologies/rxno: 2
- bel2scm/bel2scm: 2
- pybel/pybel-jupyter: 2
- pathwayforte/reproducibility-survey: 2
- cthoyt/ols-client: 2
- obophenotype/planarian-phenotype-ontology: 1
- w3c/dpv: 1
- ebispot/ols4: 1
- stonkgs/stonkgs: 1
- cthoyt/orcid_downloader: 1
- cthoyt/geometric-graphs: 1
- cthoyt/protein-embedding-review: 1
- fyu/lsun: 1
- patwalters/practical_cheminformatics_tutorials: 1
- cthoyt/rhea-fingerprints: 1
- rdkit/automatedseriesclassification: 1
- SpeciesFileGroup/nomen: 1
- mberr/torch-tools: 1
- phi-base/phipo: 1
- ontoneo-project/ontoneo: 1
- ebispot/amphx_ontology: 1
- proconsortium/proteinontology: 1
- dhimmel/sider4: 1
- monarch-initiative/vertebrate-breed-ontology: 1
- display-lab/psdo: 1
- GuiltyTargets/guiltytargets: 1
- pato-ontology/pato: 1
- cthoyt/pybacting: 1
- obi-ontology/obi: 1
- scholrly/orcid-python: 1
- ebispot/clyh_ontology: 1
- cthoyt/schoolwork: 1
- ebi-biomodels/sbo: 1
- utrechtuniversity/swords-uu: 1
- LilSpazJoekp/docstrfmt: 1
- evidenceontology/evidenceontology: 1
- opmi/opmi: 1
- pharmacome/conib: 1
- planteome/plant-experimental-conditions-ontology: 1
- miselico/semopenalex_conversion: 1
- ino-ontology/ino: 1
- earth-metabolome-initiative/emikg: 1
- scijava/scyjava: 1
- mbr/flask-bootstrap: 1
- rat-genome-database/cmo-clinical-measurement-ontology: 1
- rat-genome-database/pw-pathway-ontology: 1
- obophenotype/zebrafish-phenotype-ontology: 1
- jrieke/year-on-github: 1
- oboacademy/obook: 1
- planteome/plant-stress-ontology: 1
- incatools/ontology-development-kit: 1
- dictybase/migration-data: 1
- pedemonte96/causaleffect: 1
- python/mypy: 1
- ccb-hms/ontology-mapper: 1
- jannahastings/mental-functioning-ontology: 1
- insect-morphology/aism: 1
- incatools/ontology-access-kit: 1
- INCATools/obographviz: 1
- swansonk14/p_tqdm: 1
- ahida-development/ols-py: 1
- algebraicjulia/py-acsets: 1
- ndoll1998/knowbert: 1
- biolink/kgx: 1
- flora-phenotype-ontology/flopoontology: 1
- mrmaxguns/wonderwordsmodule: 1
- cthoyt/umls_downloader: 1
- callahantiff/OMOP2OBO: 1
- monarch-initiative/monochrom: 1
- Sujit-O/pykg2vec: 1
- monarch-initiative/mondo: 1
- chemkg/chemrof: 1
- safisher/ornaseq: 1
- biopragmatics/debio: 1
- saezlab/bioservices: 1
- HunterMcGushion/docstr_coverage: 1
- txpo-ontology/txpo: 1
- chemkg/linkml-rhea: 1
- olivierbeq/cdk_pywrapper: 1
- webfactory/baton: 1
- hemekg/hemekg: 1
- mbr/tinydb-git: 1
- rat-genome-database/xco-experimental-condition-ontology: 1
- bio2bel/hmdd: 1
- obophenotype/dicty-phenotype-ontology: 1
- EnvironmentOntology/environmental-exposure-ontology: 1
- phanein/deepwalk: 1
- belbio/bel: 1
- ihcc-cohorts/gecko: 1
- snap-stanford/ogb: 1
- chanzuckerberg/ontology-ui: 1
- owlcs/owlapi: 1
- glygen-glycan-data/gnome: 1
- omnisearch/ncro: 1
- EnvironmentOntology/envo: 1
- cthoyt/pydeogram: 1
- gyorilab/brain: 1
- biolink/information-resource-registry: 1
- cmungall/formal-ontology-analysis: 1
- biopragmatics/biopragmatics.github.io: 1
- openlhs/labo: 1
- cthoyt/ontoportal-client: 1
- deepakunni3/bosc-review-of-reviews: 1
- python-cachier/cachier: 1
- DeepGraphLearning/torchdrug: 1
- EnvironmentOntology/gaz: 1
- rat-genome-database/mmo-measurement-method-ontology: 1
- linkml/linkml-model: 1
- nfdi4plants/nfdi4plants_ontology: 1
- rdkit/rdkit: 1
- chihming/awesome-network-embedding: 1
- nuriaqueralt/covid19-epidemiology-ontology: 1
- rsc-ontologies/rsc-cmo: 1
- justinmayer/virtualfish: 1
- v0lta/PyTorch-Wavelet-Toolbox: 1
- rat-genome-database/RS-Rat-Strain-Ontology: 1
- Thakar-Lab/WikiNetworks: 1
- FunctionLab/selene: 1
- saezlab/dorothea: 1
- mims-harvard/TDC: 1
- stellargraph/stellargraph: 1
- gyorilab/gyorilab.github.io: 1
- pcastellanoescuder/foodbiomarkerontology: 1
- INCATools/kgcl: 1
- Cojabi/DataComp: 1
- kohulan/decimer-image-to-smiles: 1
- AgriculturalSemantics/agro: 1
- pschwllr/minimal_project: 1
- twolfson/restructuredtext-lint: 1
- biopragmatics/bioregistry-docker: 1
- jannahastings/emotion-ontology: 1
- saezlab/pypath: 1
- aspuru-guzik-group/stoned-selfies: 1
- EcologicalSemantics/ecocore: 1
- gyorilab/indra_curation: 1
- cthoyt/python-typing-dilemma: 1
- patwalters/yamc: 1
- pykeen/pykeen.github.io: 1
- foodontology/foodon: 1
- bio-ontology-research-group/unit-ontology: 1
- gyorilab/drug_similarity: 1
- cido-ontology/cido: 1
- rusty1s/pytorch_scatter: 1
- clinicaltrialontology/cto: 1
- sva-se/hso: 1
- gyorilab/indra_network_search: 1
- biolink/ontobio: 1
- basisresearch/chirho: 1
- OlivierBeq/Papyrus-scripts: 1
- jhylin/data_in_life_blog: 1
- cthoyt/chemrxiv-summarize: 1
- PathwayMerger/PathMe-Viewer: 1
- berkeleybop/artificial-intelligence-ontology: 1
- dobraczka/kiez: 1
- egonw/jats: 1
- luis-gonzalez-m/collembola: 1
- benedekrozemberczki/gemsec: 1
- readthedocs/readthedocs.org: 1
- click-contrib/sphinx-click: 1
- LucaCappelletti94/pubmed_embedding: 1
- obophenotype/xenopus-phenotype-ontology: 1
Pull requests created
- biopragmatics/bioregistry: 240
- biopragmatics/pyobo: 191
- y0-causal-inference/y0: 112
- cthoyt/curies: 75
- biopragmatics/biomappings: 72
- biopragmatics/semra: 69
- cthoyt/pystow: 53
- pyobo/pyobo: 46
- gyorilab/indra_cogex: 45
- mapping-commons/sssom-py: 45
- cthoyt/class-resolver: 41
- cthoyt/cthoyt.github.io: 40
- pybel/pybel: 39
- biopragmatics/curies: 38
- biopragmatics/bioversions: 30
- pykeen/pykeen: 28
- AstraZeneca/chemicalx: 25
- indralab/gilda: 22
- biopragmatics/biosynonyms: 22
- gyorilab/gilda: 22
- biopragmatics/bioontologies: 19
- sorgerlab/famplex: 19
- openjournals/inara: 18
- cthoyt/ssslm: 18
- linkml/prefixmaps: 16
- AstraZeneca/rexmex: 15
- sorgerlab/indra: 15
- v0lta/PyTorch-Wavelet-Toolbox: 12
- biopragmatics/biolookup: 11
- algebraicjulia/py-acsets: 11
- gyorilab/pybiopax: 11
- biopragmatics/biolexica: 11
- pybel/pybel-tools: 10
- cthoyt/chembl-downloader: 10
- bio2bel/bio2bel: 10
- cthoyt/zenodo-client: 10
- gyorilab/adeft: 8
- biopragmatics/oquat: 8
- scolby33/easy_config: 8
- cthoyt/cookiecutter-snekpack: 7
- mapping-commons/sssom: 7
- OpenBioLink/OpenBioLink: 7
- ComPath/compath-resources: 6
- obofoundry/obofoundry.github.io: 6
- PathwayMerger/PathMe: 6
- obofoundry/obo-dashboard: 6
- gyorilab/emmaa: 6
- cthoyt/quickstatements_client: 6
- cthoyt/umls_downloader: 5
- stonkgs/stonkgs: 5
- bel2scm/bel2scm: 5
- cebel/pyctd: 5
- bel-commons/bel-commons: 5
- cthoyt/obographs: 5
- mberr/torch-ppr: 4
- cthoyt/geometric-graphs: 4
- prefixcommons/prefixcommons-py: 4
- cthoyt/autoreviewer: 4
- bio2bel/wikipathways: 4
- indralab/protmapper: 4
- KramerChristian/NonadditivityAnalysis: 4
- dobraczka/kiez: 4
- Kohulan/DECIMER-Image_Transformer: 4
- gyorilab/gyorilab.github.io: 4
- incatools/ontology-access-kit: 4
- astral-sh/uv: 4
- cthoyt/semantic-pydantic: 3
- SuLab/WikidataIntegrator: 3
- scolby33/pushover_complete: 3
- gyorilab/causal_precedence_training: 3
- planteome/plant-experimental-conditions-ontology: 3
- planteome/plant-trait-ontology: 3
- cthoyt/ols-client: 3
- cthoyt/pybacting: 3
- pykeen/ilpc2022: 3
- EnvironmentOntology/envo: 3
- cthoyt/ontoportal-client: 3
- bio2bel/kegg: 3
- biopragmatics/obo-db-ingest: 3
- bio2bel/reactome: 3
- vemonet/rdflib-endpoint: 3
- SmartDataAnalytics/BioKEEN: 3
- nuriaqueralt/covid19-epidemiology-ontology: 3
- python-cachier/cachier: 3
- oboacademy/obook: 3
- monarch-initiative/mondo: 3
- ndexbio/ndex2-client: 3
- gyorilab/mira: 3
- brenda-enzymes/bto: 3
- cebel/pyuniprot: 2
- LucaCappelletti94/pygifsicle: 2
- phanein/deepwalk: 2
- FAIRplus/the-fair-cookbook: 2
- rdkit/homebrew-rdkit: 2
- VHRanger/CSRGraph: 2
- rat-genome-database/xco-experimental-condition-ontology: 2
- gyorilab/indra_curation: 2
- cthoyt/docdata: 2
- fxcoudert/tools: 2
- rusty1s/pytorch_scatter: 2
- drug2ways/drug2ways: 2
- pybel/bel-repository: 2
- dmis-lab/bern2: 2
- ComPath/ComPath-Utils: 2
- biopragmatics/debio: 2
- obofoundry/cob: 2
- DeepGraphLearning/torchdrug: 2
- rsc-ontologies/rsc-cmo: 2
- bel-enrichment/bel-enrichment: 2
- pharmacome/conib: 2
- linkml/linkml-runtime: 2
- regebro/pyroma: 2
- related-sciences/nxontology: 2
- helloflask/bootstrap-flask: 2
- berkeleybop/berkeleybop.github.io: 2
- pykeen/ranking-metrics-manuscript: 2
- chembl/chembl_webresource_client: 2
- dhimmel/obonet: 2
- y0-causal-inference/y0-bio: 2
- HunterMcGushion/docstr_coverage: 2
- webfactory/baton: 2
- jgm/pandoc: 2
- cthoyt/drugbank-downloader: 2
- cthoyt/more_click: 2
- egonw/wikidata-chemistry: 2
- pypa/packaging: 2
- mberr/torch-max-mem: 2
- biopragmatics/curies.rs: 2
- bio2bel/hgnc: 2
- fair-software/howfairis: 1
- cthoyt/nrl: 1
- hemekg/hemekg: 1
- joshmoore/joshmoore.github.io: 1
- cyang0128/nutritional-epidemiologic-ontologies: 1
- pybel/pybel-jupyter: 1
- kohulan/decimer-image-to-smiles: 1
- ddomingof/bioinformatics-conference-bingo: 1
- smartdataanalytics/poem: 1
- obophenotype/human-phenotype-ontology: 1
- pykeen/pykeen.github.io: 1
- rdkit/rdkit: 1
- insect-morphology/lepao: 1
- cthoyt/biomodels-metadata-analysis: 1
- zqfang/GSEApy: 1
- patwalters/jcamd_model_comparison: 1
- monarch-initiative/monarch-mapping-commons: 1
- biopragmatics/biopragmatics.github.io: 1
- cthoyt/orcid_downloader: 1
- ArshSekhon/pubtator_loader: 1
- hammerlab/vcf-annotate-polyphen: 1
- cthoyt/multisplitby: 1
- bio2bel/msig: 1
- bio2bel/entrez: 1
- obophenotype/c-elegans-development-ontology: 1
- cebel/pyhgnc: 1
- aida-ugent/maxentcomb: 1
- rat-genome-database/mmo-measurement-method-ontology: 1
- insect-morphology/aism: 1
- maastrichtu-ids/fairificator: 1
- fyu/lsun: 1
- MobleyLab/GuthrieSolv: 1
- dashea/requests-file: 1
- rat-genome-database/RS-Rat-Strain-Ontology: 1
- pybel/pybel-cx: 1
- cthoyt/fairsharing-client: 1
- kavgan/word_cloud: 1
- incatools/ontology-development-kit: 1
- jrwnter/cddd: 1
- evidenceontology/evidenceontology: 1
- INCATools/kgcl: 1
- reymond-group/drfp: 1
- AnacletoLAB/grape: 1
- bharathgs/Awesome-pytorch-list: 1
- luis-gonzalez-m/collembola: 1
- rdkit/ugm_2023: 1
- bio2bel/mirbase: 1
- obophenotype/c-elegans-gross-anatomy-ontology: 1
- monarch-initiative/embiggen: 1
- ritchieng/the-incredible-pytorch: 1
- VHRanger/nodevectors: 1
- gyorilab/drug_similarity: 1
- cygri/prefix.cc: 1
- BojarLab/glycowork: 1
- obophenotype/dicty-phenotype-ontology: 1
- rsc-ontologies/rxno: 1
- mbr/tinydb-git: 1
- johnbachman/depmap_analysis: 1
- trutzig89182/Mastodon-Sociologists: 1
- justinmayer/virtualfish: 1
- cido-ontology/cido: 1
- cthoyt/resume: 1
- nfdi4plants/nfdi4plants_ontology: 1
- benedekrozemberczki/gemsec: 1
- insect-morphology/colao: 1
- manubot/manubot: 1
- FunctionLab/selene: 1
- Cojabi/DataComp: 1
- AgriculturalSemantics/agro: 1
- LucaCappelletti94/downloaders: 1
- omnisearch/ncro: 1
- obophenotype/provisional_cell_ontology: 1
- earth-metabolome-initiative/earth-metabolome-initiative.github.io: 1
- RDFLib/rdflib: 1
- patwalters/clusterama: 1
- bgyori/bgyori.github.io: 1
- mlakewood/hypo_schema: 1
- mbr/flask-bootstrap: 1
- opmi/opmi: 1
- songlab-cal/tape-neurips2019: 1
- patwalters/sfi: 1
- nikitavoloboev/nikiv: 1
- scijava/scyjava: 1
- scijava/jgo: 1
- rat-genome-database/cmo-clinical-measurement-ontology: 1
- corenting/immutabledict: 1
- greglandrum/rdkit_blog: 1
- cthoyt/pyrdle: 1
- rdkit/automatedseriesclassification: 1
- cthoyt/rorio: 1
- swansonk14/p_tqdm: 1
- adelenelai/onglai-classify-homologues: 1
- json-ld/json-ld.org: 1
- bio2bel/chebi: 1
- igraph/igraph.org: 1
- ComPath/ComPath: 1
- callahantiff/OMOP2OBO: 1
- gbv/bartoc.org: 1
- obo-behavior/behavior-ontology: 1
- lmmentel/awesome-python-chemistry: 1
- gyorilab/ui_util: 1
- Emiller88/Mastodon-Bioinformatics: 1
- bio2bel/mirtarbase: 1
- obofoundry/obo-nor.github.io: 1
- greglandrum/rdkit-blog-fastpages: 1
- safisher/ornaseq: 1
- WolfgangFahl/snapquery: 1
- mwang87/metabolomicsspectrumresolver: 1
- openlhs/labo: 1
- cthoyt/selventa-knowledge: 1
- LucaCappelletti94/pubmed_embedding: 1
- spookylukey/table-format: 1
- bio2bel/expasy: 1
- snap-stanford/kgreasoning: 1
- baoilleach/smizip: 1
Maintainer
- biopragmatics/bioregistry: 317
- biopragmatics/pyobo: 202
- y0-causal-inference/y0: 145
- biopragmatics/biomappings: 89
- pyobo/pyobo: 85
- pybel/pybel-tools: 85
- cthoyt/curies: 82
- bel-commons/bel-commons: 82
- biopragmatics/semra: 78
- pybel/pybel: 73
- gyorilab/indra_cogex: 62
- cthoyt/pystow: 61
- mapping-commons/sssom-py: 57
- cthoyt/cthoyt.github.io: 50
- cthoyt/class-resolver: 46
Active Maintainer
- biopragmatics/pyobo: 189
- biopragmatics/bioregistry: 149
- biopragmatics/semra: 61
- biopragmatics/curies: 34
- pykeen/pykeen: 32
- cthoyt/ssslm: 20
- biopragmatics/bioversions: 19
- biopragmatics/biosynonyms: 18
- cthoyt/pystow: 17
- cthoyt/class-resolver: 17
- biopragmatics/biomappings: 10
- biopragmatics/bioontologies: 9
- mapping-commons/sssom-py: 7
- cthoyt/cookiecutter-snekpack: 6
- cthoyt/obographs: 5
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Pull Request Author Associations
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