Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / linkml/prefixmaps issues and pull requests

#77 - Does anyone else want to maintain this package on conda?

Issue - State: open - Opened by dstansby about 1 month ago - 1 comment

#76 - refresh contexts based on GO changes upstream

Pull Request - State: closed - Opened by sierra-moxon about 1 month ago

#75 - Possible unnecessary error checking loading from included contexts

Issue - State: open - Opened by ptgolden about 2 months ago - 1 comment

#74 - Update prefixmaps with new bioregistry and go-site metadata

Pull Request - State: closed - Opened by sierra-moxon 4 months ago - 1 comment

#72 - Converter sometimes expands URI incorrectly

Issue - State: open - Opened by glass-ships 5 months ago

#71 - Ensure standard semweb prefixes are not uppercases, see #70

Pull Request - State: closed - Opened by cmungall 7 months ago

#70 - bioregistry changes have broken the merged prefix map

Issue - State: open - Opened by cmungall 7 months ago - 3 comments

#69 - Cut call time of `add_prefix()` by 99.8%

Pull Request - State: closed - Opened by sneakers-the-rat 8 months ago

#68 - `Context.combine` is O(2n^2)

Issue - State: closed - Opened by sneakers-the-rat 9 months ago

#67 - refresh prefix files in prep for a release

Pull Request - State: closed - Opened by sierra-moxon 9 months ago

#66 - Allow installation on Python 3.8

Pull Request - State: closed - Opened by pkalita-lbl 9 months ago

#65 - `prefixmaps` should not restrict using Python 3.8

Issue - State: closed - Opened by pkalita-lbl 9 months ago

#64 - fix: align declared supported python versions

Pull Request - State: closed - Opened by Silvanoc 10 months ago - 8 comments

#63 - 62 fix omim

Pull Request - State: closed - Opened by amc-corey-cox 10 months ago - 2 comments

#62 - Release 2.0 can no longer expand OMIM IDs

Issue - State: closed - Opened by kevinschaper 11 months ago - 2 comments

#61 - freeze prefix.cc refreshes

Issue - State: open - Opened by cmungall 11 months ago

#60 - Ready release

Pull Request - State: closed - Opened by sierra-moxon 11 months ago

#59 - Use named logger and don't hardcode level

Pull Request - State: closed - Opened by pkalita-lbl 11 months ago

#57 - 0.2.0 release was made but pyproject.toml does not reflect this

Issue - State: open - Opened by cthoyt 12 months ago - 2 comments

#56 - Add URI prefix synonyms from the Bioregistry

Pull Request - State: closed - Opened by cthoyt 12 months ago

#55 - update dependencies

Pull Request - State: closed - Opened by glass-ships 12 months ago - 4 comments

#54 - Remove pydantic pinning

Pull Request - State: closed - Opened by cmungall about 1 year ago

#53 - chore: add support for python 3.12

Pull Request - State: closed - Opened by Silvanoc about 1 year ago - 6 comments

#52 - Add source column to merged context CSVs

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 2 comments

#51 - Include source(s) in merged context

Issue - State: closed - Opened by cthoyt about 1 year ago
Labels: enhancement

#50 - Potential bug in the merge algorithm

Issue - State: open - Opened by cthoyt about 1 year ago

#49 - Duplicate entries for Wikidata

Issue - State: open - Opened by cthoyt about 1 year ago - 1 comment
Labels: bug

#48 - Add prefix synonyms from the Bioregistry

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#47 - Request for propogating CURIE prefix synonyms

Issue - State: closed - Opened by cthoyt about 1 year ago - 2 comments

#46 - remove warning, change to log.info

Pull Request - State: closed - Opened by sierra-moxon about 1 year ago

#45 - Add support for Python 3.12

Issue - State: closed - Opened by Silvanoc about 1 year ago

#43 - Poetry installation failing in GH Actions

Pull Request - State: closed - Opened by hrshdhgd about 1 year ago

#42 - Add high level converter getter

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 2 comments

#41 - unpinning dependencies and moving some dependencies to dev dependencies

Pull Request - State: closed - Opened by cmungall over 1 year ago - 1 comment

#40 - Release 0.1.5

Pull Request - State: closed - Opened by sierra-moxon over 1 year ago

#39 - Release 0.4.2

Pull Request - State: closed - Opened by sierra-moxon over 1 year ago

#38 - Add testing on Py311

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#37 - Simplify getting a `curies.Converter` from a `prefixmaps.Context`

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#36 - Adding w3id context

Pull Request - State: closed - Opened by cmungall almost 2 years ago

#35 - Added internal documentation on why some contexts skip some tests.

Pull Request - State: closed - Opened by cmungall almost 2 years ago

#34 - Add a context for w3id.org prefixes

Issue - State: closed - Opened by cmungall almost 2 years ago
Labels: enhancement

#33 - Upgrade Bioregistry import

Pull Request - State: closed - Opened by cthoyt almost 2 years ago - 3 comments

#32 - refresh prefix maps

Pull Request - State: closed - Opened by sierra-moxon almost 2 years ago - 1 comment

#31 - remove importlib dependency to avoid version conflicts when adding to linkml_runtime

Pull Request - State: closed - Opened by sierra-moxon almost 2 years ago - 1 comment

#30 - Update dependencies

Pull Request - State: closed - Opened by cthoyt about 2 years ago - 1 comment

#29 - Add GitHub Actions workflow for refreshing data

Pull Request - State: closed - Opened by cthoyt about 2 years ago

#28 - Add ingest for Bioportal prefixes

Pull Request - State: closed - Opened by caufieldjh about 2 years ago

#27 - Autodeploy docs using GH Actionss

Pull Request - State: closed - Opened by hrshdhgd about 2 years ago - 1 comment

#26 - Add tests for integrity of merged contexts

Issue - State: closed - Opened by cthoyt about 2 years ago - 1 comment
Labels: testing

#25 - Updated instantation of `curies.Converter`

Pull Request - State: closed - Opened by cthoyt about 2 years ago

#24 - Additional inline docs and tests

Pull Request - State: closed - Opened by cmungall about 2 years ago

#23 - Update README.md

Pull Request - State: closed - Opened by cmungall about 2 years ago

#22 - Where should improved `prefixmaps` to `curies.Converter` code live?

Issue - State: closed - Opened by cthoyt about 2 years ago - 3 comments
Labels: question

#21 - Improve README text

Pull Request - State: closed - Opened by cthoyt about 2 years ago

#20 - Create LICENSE

Pull Request - State: closed - Opened by cmungall about 2 years ago - 2 comments

#19 - Add some missing project metadata

Pull Request - State: closed - Opened by cthoyt about 2 years ago

#18 - Add software license

Issue - State: closed - Opened by cthoyt about 2 years ago

#17 - Improve variable names

Pull Request - State: closed - Opened by cthoyt about 2 years ago - 2 comments

#16 - BioPortal prefix updates and additions

Pull Request - State: closed - Opened by caufieldjh about 2 years ago

#15 - Add data integrity tests

Pull Request - State: closed - Opened by cthoyt about 2 years ago - 4 comments

#14 - Improve package navigability

Pull Request - State: closed - Opened by cthoyt about 2 years ago - 1 comment

#13 - Correct/remove duplicated canonical prefixes in Bioportal maps

Pull Request - State: closed - Opened by caufieldjh about 2 years ago

#12 - Link to ReadTheDocs

Issue - State: closed - Opened by cthoyt about 2 years ago - 2 comments

#11 - Contexts don't guarantee bi-directional mapping

Issue - State: open - Opened by cthoyt about 2 years ago - 7 comments

#10 - Add appropriate package metadata so PyPI links to the github repository

Issue - State: closed - Opened by cthoyt about 2 years ago - 1 comment

#9 - Adjust `pyyaml` version

Pull Request - State: closed - Opened by caufieldjh about 2 years ago - 4 comments

#8 - Lower minimum Python version to 3.7

Pull Request - State: closed - Opened by pkalita-lbl about 2 years ago - 13 comments

#7 - Lower minimum Python version to 3.7

Issue - State: closed - Opened by pkalita-lbl about 2 years ago

#6 - Relationship to other repositories

Issue - State: closed - Opened by cthoyt about 2 years ago - 2 comments

#5 - Enable top-level imports

Pull Request - State: closed - Opened by cthoyt about 2 years ago - 2 comments

#4 - Add a step to ETL build to refresh bioportal

Issue - State: closed - Opened by cmungall about 2 years ago - 1 comment

#3 - Add Bioportal prefixes

Pull Request - State: closed - Opened by caufieldjh about 2 years ago - 5 comments

#2 - added docs as extras and updated poetry

Pull Request - State: closed - Opened by hrshdhgd about 2 years ago

#1 - poetry update and linting corrections

Pull Request - State: closed - Opened by hrshdhgd about 2 years ago