Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / lawremi/ggbio issues and pull requests

#173 - deprecated facets arg

Issue - State: open - Opened by auldn 2 months ago

#172 - Don't know how to export ggbio object to a figure

Issue - State: open - Opened by albustruong 6 months ago - 2 comments

#171 - Update layout_karyogram docs as keepSeqlevels was moved to GenomeInfoDb

Pull Request - State: closed - Opened by sanchit-saini about 1 year ago - 1 comment

#170 - Modify plotting options at the ggplot level

Issue - State: open - Opened by jemorlanes over 1 year ago

#169 - HTTP Error 429 iterating through ideogram generation

Issue - State: open - Opened by tzvi909 over 1 year ago

#168 - ggbio rmd

Pull Request - State: open - Opened by Rohit-Satyam almost 2 years ago - 2 comments

#167 - how can I plot name for each of GRanges?

Issue - State: closed - Opened by panxiaoguang almost 2 years ago - 1 comment

#166 - Vignette Conversion Request

Issue - State: open - Opened by Rohit-Satyam about 2 years ago - 5 comments

#165 - rect heights when there are few rows

Issue - State: open - Opened by jvolkening about 2 years ago - 2 comments

#163 - plotly not support ggbio object

Issue - State: closed - Opened by cj-forJ over 2 years ago - 2 comments

#162 - Fix call to method0() for missing and uneval

Pull Request - State: closed - Opened by sanchit-saini over 2 years ago - 1 comment

#161 - Problems with `geom_bar()` when ggbio is loaded

Issue - State: closed - Opened by grimbough over 2 years ago - 5 comments

#160 - Fix do.call() 'what' must be a function or character string

Pull Request - State: closed - Opened by sanchit-saini almost 3 years ago

#159 - tracks(xlim) doesn't work with GRanges input

Issue - State: open - Opened by lcolladotor almost 3 years ago - 3 comments

#158 - Add GITHUB_PAT token to fix build error

Pull Request - State: closed - Opened by sanchit-saini about 3 years ago - 1 comment

#157 - Tracks fixes

Pull Request - State: closed - Opened by sanchit-saini about 3 years ago

#156 - Remove do.ggcall with do.call

Pull Request - State: closed - Opened by sanchit-saini about 3 years ago

#155 - Tracks fixes

Pull Request - State: closed - Opened by sanchit-saini about 3 years ago

#154 - titles lost when combining several tracks

Issue - State: open - Opened by mgabriel01 about 3 years ago - 2 comments

#153 - Fix Github Action to Run against a PR correctly

Pull Request - State: closed - Opened by sanchit-saini about 3 years ago

#152 - Fix removeAxis()

Pull Request - State: closed - Opened by sanchit-saini about 3 years ago

#151 - Rewrite

Pull Request - State: closed - Opened by sanchit-saini about 3 years ago

#149 - access to the order of transcripts in layout

Issue - State: open - Opened by mmkim1210 about 3 years ago - 1 comment

#148 - UTRs are overplotted by exons

Issue - State: open - Opened by pfh over 3 years ago - 3 comments

#147 - Error in checkSlotAssignment(object, name, value)

Issue - State: open - Opened by Charles1DENG over 3 years ago - 2 comments

#146 - Add Github Action to check & calculate coverage

Pull Request - State: closed - Opened by sanchit-saini over 3 years ago

#145 - Update homepage and repository URL

Pull Request - State: closed - Opened by sanchit-saini over 3 years ago

#144 - names.expr not work

Issue - State: closed - Opened by zhang616123 over 3 years ago - 4 comments

#143 - Rewrite geom_bar()

Pull Request - State: closed - Opened by sanchit-saini over 3 years ago

#142 - Rewrite geom_segment()

Pull Request - State: closed - Opened by sanchit-saini over 3 years ago

#141 - geom_segment Example Uses Illogical Geom Fill

Issue - State: closed - Opened by DarioS over 3 years ago

#140 - Rewrite geom rect

Pull Request - State: closed - Opened by sanchit-saini over 3 years ago

#139 - Implementation of geom_hist in circular layout

Issue - State: open - Opened by almeidasilvaf over 3 years ago - 3 comments

#138 - combine ggplot2 plot with ggbio plot

Issue - State: open - Opened by whui2bioinformatics over 3 years ago - 3 comments

#137 - Rescale fixes

Pull Request - State: closed - Opened by sanchit-saini over 3 years ago

#136 - Autoplot fixes

Pull Request - State: closed - Opened by sanchit-saini over 3 years ago

#135 - Remove unused functions from Tracks class

Pull Request - State: closed - Opened by sanchit-saini over 3 years ago

#134 - Stat improvement cleanup

Pull Request - State: closed - Opened by sanchit-saini over 3 years ago

#133 - Initial Improvements and cleanup

Pull Request - State: closed - Opened by sanchit-saini over 3 years ago

#132 - Geom alignment label

Pull Request - State: closed - Opened by sanchit-saini over 3 years ago

#131 - Refactor geom_rect label checks to make testing convenient

Pull Request - State: closed - Opened by sanchit-saini over 3 years ago

#130 - Fix geom_bar to set custom y-axis label

Pull Request - State: closed - Opened by sanchit-saini over 3 years ago

#128 - Testcases for ggbio

Pull Request - State: closed - Opened by sanchit-saini over 3 years ago - 1 comment

#127 - Update panel.margin to panel.spacing property

Pull Request - State: closed - Opened by sanchit-saini almost 4 years ago

#126 - Registered S3 method overwritten by 'GGally'

Issue - State: closed - Opened by BatoolMM almost 4 years ago - 4 comments

#125 - plotRangesLinkedToData for three column

Issue - State: closed - Opened by demis001 over 4 years ago - 3 comments

#124 - pass ellipsis to scale_x_continuous

Pull Request - State: open - Opened by sam217pa over 4 years ago - 2 comments

#123 - ideo geom

Issue - State: open - Opened by lfaino almost 5 years ago - 5 comments

#122 - Segment not parallel

Issue - State: closed - Opened by blsfoxfox almost 5 years ago - 2 comments

#121 - Circos track ranges misaligned relative to ideogram?

Issue - State: open - Opened by vkartha about 5 years ago - 1 comment

#120 - Plot CNV graphs over an Ideogram

Issue - State: closed - Opened by andrisvAria over 5 years ago - 2 comments

#119 - Hi!

Issue - State: closed - Opened by chesterlee7246 over 5 years ago

#117 - Cannot be built with R 3.6.0

Issue - State: closed - Opened by rekado over 5 years ago - 1 comment

#116 - eval_tidy error when set angle aes for 'text' geom in layout_circle

Issue - State: open - Opened by ghbore over 5 years ago - 1 comment

#115 - Autoplot example from manual not working

Issue - State: closed - Opened by syouligan almost 6 years ago - 2 comments

#114 - geom_alignment and autoplot fail at "Defining UTRs..." step

Issue - State: closed - Opened by docmanny almost 6 years ago - 1 comment

#112 - loading ggbio is stuck

Issue - State: closed - Opened by ghbore about 6 years ago

#111 - Error in min(c(x, xmin), na.rm = TRUE) : invalid 'type' (list) of argument

Issue - State: closed - Opened by ekernf01 about 6 years ago - 3 comments

#110 - Bad link on main github page for ggbio

Issue - State: open - Opened by wvnicholson about 6 years ago - 1 comment

#109 - homepage is dead.

Issue - State: closed - Opened by pwwang about 6 years ago - 1 comment

#108 - The bioconductor vignette doesn't contain any plots

Issue - State: closed - Opened by mukundvarma about 6 years ago - 1 comment

#107 - Problem with autoplot

Issue - State: closed - Opened by marziacremona over 6 years ago - 1 comment

#105 - stat_coverage Y-axis limits or Y-max

Issue - State: open - Opened by chrisgulvik over 6 years ago

#104 - Project website no longer exists

Issue - State: open - Opened by scottgigante over 6 years ago - 1 comment

#103 - Error: Don't know how to add o to a plot

Issue - State: closed - Opened by zhewa over 6 years ago

#101 - Failure with dev ggplot2

Issue - State: closed - Opened by hadley over 6 years ago - 7 comments

#100 - adding color to transcripts plot by category

Issue - State: closed - Opened by anmwinter over 6 years ago - 4 comments

#99 - plotIdeogram fails on genome hg38

Issue - State: closed - Opened by ramiromagno over 6 years ago - 2 comments

#98 - Equivalent of `ggplot_build` for track plots?

Issue - State: open - Opened by mschubert over 6 years ago - 4 comments

#97 - How to add gene names and thicken the links in a fusion plot

Issue - State: closed - Opened by komalsrathi over 6 years ago - 4 comments

#96 - autoplot fails to draw indel from VRanges object

Issue - State: closed - Opened by andronekomimi over 6 years ago - 1 comment

#95 - Error: Don't know how to add o to a plot

Issue - State: open - Opened by wibom almost 7 years ago - 5 comments

#94 - No method or default for coercing "gg" to "ggORNULL"

Issue - State: closed - Opened by twooldridge almost 7 years ago - 1 comment

#93 - geom_text using metadata from Granges object?

Issue - State: closed - Opened by nnalpas about 7 years ago - 3 comments

#92 - how to overlay two coverage plots?

Issue - State: open - Opened by zhenyisong over 7 years ago - 2 comments

#91 - why layout_karyogram (mm9) with cytoband = TRUE failed

Issue - State: closed - Opened by ChevyXu over 7 years ago - 3 comments

#90 - 'panel.margin' is deprecated

Issue - State: closed - Opened by twmccart over 7 years ago - 8 comments

#89 - autoplot with vcf object

Issue - State: open - Opened by MichelMoser over 7 years ago - 1 comment

#88 - Font and formatting of side strips and x axis label

Issue - State: open - Opened by mevers over 7 years ago

#87 - How to combine a ggplot object with a ggbio Track object?

Issue - State: closed - Opened by rargelaguet almost 8 years ago - 3 comments

#86 - tracks alignment problem

Issue - State: closed - Opened by andronekomimi almost 8 years ago - 1 comment

#85 - ggbio with facet_grid()

Issue - State: closed - Opened by JokingHero almost 8 years ago - 3 comments

#84 - circle results in "no data found" when GRanges has names

Issue - State: closed - Opened by seandavi almost 8 years ago - 4 comments

#83 - align genomic features with phylogenetic tree

Issue - State: closed - Opened by GuangchuangYu about 8 years ago - 7 comments

#82 - layout_circle: histogram?

Issue - State: open - Opened by Deleetdk about 8 years ago - 1 comment

#81 - tracks () function from ggbio does not allow italic expression in the title

Issue - State: closed - Opened by Yatros about 8 years ago - 4 comments

#80 - Odd lengths matching behavior og layout_circle

Issue - State: open - Opened by Deleetdk about 8 years ago

#79 - scale_color.* not working correctly

Issue - State: closed - Opened by Deleetdk about 8 years ago - 5 comments

#78 - xlim not working for me

Issue - State: closed - Opened by victorvvong over 8 years ago - 4 comments

#77 - ggbio colors not working properly

Issue - State: closed - Opened by fpbarthel over 8 years ago - 4 comments

#73 - zoom region not working.

Issue - State: closed - Opened by mbertalan over 8 years ago - 6 comments

#72 - it's really hard to install ggbio

Issue - State: closed - Opened by jmzeng1314 over 8 years ago - 1 comment

#57 - How to add gap line in lncRNA graph by using ggplot

Issue - State: open - Opened by zm20074970 almost 10 years ago - 1 comment