GitHub / DarioS issue stats
Total issues: 708
Total pull requests: 13
Merged pull request: 5
Average time to close issues: 4 months
Average time to close pull requests: 2 days
Average comments per issue: 1.42
Average comments per pull request: 2.31
Issues created
- sydney-informatics-hub/fastq-to-bam: 18
- SydneyBioX/BenchHub: 15
- saeyslab/multinichenetr: 14
- sydney-informatics-hub/somatic-shortv: 14
- Bioconductor/VariantAnnotation: 13
- cBioPortal/cbioportal: 12
- vccri/ularcirc: 10
- sydney-informatics-hub/germline-shortv: 9
- statisticalbiotechnology/diffacto: 9
- sinhrks/ggfortify: 9
- SydneyBioX/ClassifyR: 9
- imbs-hl/ranger: 9
- marionilab/miloR: 8
- YuLab-SMU/enrichplot: 7
- dmlc/xgboost: 7
- therneau/survival: 7
- PoisonAlien/maftools: 7
- SydneyBioX/scClassify: 7
- alanocallaghan/scater: 6
- libscran/scrapper: 6
- snap-stanford/uce: 6
- Simon-Coetzee/motifBreakR: 6
- cafferychen777/microbiomestat: 6
- limfuxing/ruvIIInb: 6
- benlangmead/bowtie: 6
- msproteomicstools/msproteomicstools: 6
- YuLab-SMU/clusterProfiler: 6
- instanseg/instanseg: 5
- jinworks/CellChat: 5
- illumina/strelka: 5
- satijalab/seurat: 5
- bodenmillergroup/cytomapper: 5
- benlangmead/bowtie2: 5
- idekerlab/drugcell: 5
- DarioS/ClassifyR: 5
- kharchenkolab/numbat: 5
- bodenmillergroup/cafclassification: 5
- bioinfo-biols/CIRIquant: 5
- tidymodels/yardstick: 4
- SydneyBioX/scFeatures: 4
- theislab/zellkonverter: 4
- MouseLand/cellpose: 4
- FrancisCrickInstitute/TRACERx-PHLEX: 4
- genepi/haplogrep3: 4
- dcjones/proseg: 4
- DavisLaboratory/singscore: 4
- Bioconductor/SummarizedExperiment: 4
- ramhiser/sparsediscrim: 4
- PapenfussLab/StructuralVariantAnnotation: 4
- hartwigmedical/hmftools: 4
- mayer79/missRanger: 3
- AlexandrovLab/SigProfilerMatrixGenerator: 3
- bodenmillergroup/imcdatasets: 3
- PGScatalog/PGS_Catalog: 3
- mayer79/splitTools: 3
- broadinstitute/gatk: 3
- ggobi/ggally: 3
- eblondel/zen4R: 3
- broadinstitute/single_cell_portal: 3
- SydneyBioX/simpleSeg: 3
- BodenmillerGroup/steinbock: 3
- genentech/scimilarity: 3
- dviraran/SingleR: 3
- LuyiTian/scPipe: 3
- Bioconductor/GenomicRanges: 3
- abess-team/abess: 3
- hadley/adv-r: 3
- raerose01/deconstructSigs: 3
- pride-archive/pride-inspector: 3
- qingnanl/gsdensity: 3
- SydneyBioX/lisaClust: 3
- NKI-CCB/DISCOVER: 3
- dkoboldt/varscan: 3
- papenfusslab/svanumt: 3
- aoles/EBImage: 3
- seandavi/geoquery: 3
- vanvalenlab/deepcell-types: 3
- SydneyBioX/spicyR: 3
- immunogenomics/harmony: 3
- tio-ikim/cellvit-inference: 3
- BioinformaticsFMRP/TCGAbiolinks: 3
- jokergoo/ComplexHeatmap: 3
- AlexandrovLab/SigProfilerAssignment: 2
- yannchristinat/jsplice: 2
- waldronlab/MultiAssayExperiment: 2
- CellProfiler/CellProfiler: 2
- UMCUGenetics/MutationalPatterns: 2
- bioinformaticsfmrp/tcgabiolinksgui: 2
- sarahromanes/multida: 2
- microbiome/microbiome: 2
- Bioconductor/Biostrings: 2
- Bioconductor/GenomicDataCommons: 2
- nf-core/oncoanalyser: 2
- rtcga/RTCGA: 2
- bodenmillergroup/imcsegmentationpipeline: 2
- ryantibs/best-subset: 2
- lh3/bwa: 2
- Bioconductor/S4Vectors: 2
- alexchwong/SpliceWiz: 2
- PGScatalog/pgsc_calc: 2
- topepo/caret: 2
- BlishLab/scriabin: 2
- biobakery/MetaPhlAn: 2
- MarioniLab/scran: 2
- single-cell-genetics/vireo: 2
- bhklab/metagxbreast: 2
- RaphaelS1/survivalmodels: 2
- czi-ai/transcriptformer: 2
- ncborcherding/escape: 2
- boutroslab/caRpools: 2
- Bioconductor/support.bioconductor.org: 2
- cancerit/telomerecat: 2
- MarioniLab/DropletUtils: 2
- vanallenlab/vanallen_ctla4_science_rnaseq_tpm: 2
- samtools/samtools: 2
- SydneyBioX/SpatialDatasets: 2
- Bioconductor/genefilter: 2
- genepi/imputationserver: 2
- VanLoo-lab/gritic: 2
- SydneyBioX/spicyWorkflow: 2
- brentp/mosdepth: 2
- raphael-group/THetA: 2
- TileDB-Inc/TileDB-R: 2
- yuchaojiang/Canopy: 2
- heike/gglogo: 2
- ltla/scrnaseq: 2
- labsyspharm/tlsR: 2
- theislab/single-cell-best-practices: 1
- ltla/batchelor: 1
- omnibenchmark/omnibenchmark-py: 1
- lawremi/ggbio: 1
- systemsomicslab/msdialworkbench: 1
- sydneybiox/trainclassifyr: 1
- ltla/csawbook: 1
- hms-dbmi/UpSetR: 1
- single-cell-genetics/XClone: 1
- ropensci-archive/gistr: 1
- lawremi/rtracklayer: 1
- georgheinze/logistf: 1
- william-hutchison/tidySpatialExperiment: 1
- r-lib/devtools: 1
- cellgeni/sceasy: 1
- const-ae/ggupset: 1
- leekgroup/swfdr: 1
- rehbergT/zeroSum: 1
- neurorestore/Libra: 1
- RcppCore/RcppParallel: 1
- IndrajeetPatil/ggstatsplot: 1
- brentp/smoove: 1
- christophM/interpretable-ml-book: 1
- openproblems-bio/openproblems: 1
- vanallenlab/mutpanningv2: 1
- EGA-archive/ega-download-client: 1
- cBioPortal/icebox: 1
- kevinwang09/apes: 1
- Bioconductor/pkgrevdocs: 1
- campbio/musicatk: 1
- NewMillenniumWorkout/A-Neuk-BE-Server: 1
- r-lib/yaml: 1
- sydney-informatics-hub/parabricks-genomics-nf: 1
- helenalc/catalyst: 1
- ruppinlab/CSI-Microbes-identification: 1
- tidyverse/googlesheets4: 1
- corybrunson/ggalluvial: 1
- tidymodels/parsnip: 1
- steverozen/ICAMS: 1
- Bioconductor/DelayedArray: 1
- camlab-bioml/rakaia: 1
- muschellij2/rscopus: 1
- dpuiu/MitoHPC: 1
- Bioconductor/legacy.support.bioconductor.org: 1
- vanvalenlab/deepcell-tf: 1
- jonclayden/mmand: 1
- mpadge/spatialcluster: 1
- etal/cnvkit: 1
- openproblems-bio/task_batch_integration: 1
- samtools/htslib: 1
- bernatgel/CopyNumberPlots: 1
- OSCA-source/OSCA.advanced: 1
- ComputationalRegulatoryGenomicsICL/GenomicInteractions: 1
- vanvalenlab/torch-mesmer: 1
- RGLab/ggcyto: 1
- StoreyLab/subSeq: 1
- ltla/bluster: 1
- r-lib/R6: 1
- Bioconductor/GenomicAlignments: 1
- massimoaria/bibliometrix: 1
- tidyverse/ggplot2: 1
- SONGDONGYUAN1994/scDesign3: 1
- thelovelab/DESeq2: 1
- brentp/somalier: 1
- KCCG/ClinSV: 1
- b-/qmk_firmware: 1
- gavinsimpson/permute: 1
- tidyverse/readr: 1
- bhklab/survcomp: 1
- brianhie/scanorama: 1
- pachterlab/voyager: 1
- napari/napari: 1
- hemberg-lab/scmap: 1
- singler-inc/singler: 1
- labsyspharm/cylinter: 1
- IonDen/ion.rangeSlider: 1
- kevinblighe/RegParallel: 1
- dermasugita/Viola-SV: 1
- mgeaghan-garvan/cromwell-kccg-mutect2-chip: 1
- bodenmillergroup/tnbc_publication: 1
- YuLab-SMU/DOSE: 1
- Ensembl/ensembl-web-tools-api: 1
- Bioconductor/BiocStyle: 1
- raphael-group/spruce: 1
- mlr-org/mlr3pipelines: 1
- BodenmillerGroup/napari-imc: 1
- romainfrancois/nothing: 1
- mskcc/facets: 1
- r-lib/pkgdown: 1
- kassambara/survminer: 1
- dynotx/liminal-orm: 1
- LTLA/BiocSingular: 1
- ToolsVanBox/MutationalPatterns: 1
- Bioconductor/BiocIO: 1
- princetonuniversity/dp_gp_cluster: 1
- wilkelab/ggridges: 1
- r-lib/pkgload: 1
- single-cell-data/TileDB-SOMA: 1
- angelolab/ark-analysis: 1
- kasperdanielhansen/genbioconductor: 1
- humanlongevity/HLA: 1
- ncbi/sra-tools: 1
- tio-ikim/cellvit-plus-plus: 1
- edawson/assisi: 1
- mskcc/vcf2maf: 1
- csglab/phantompurger: 1
- ArcInstitute/arc-virtual-cell-atlas: 1
- YosefLab/scib-metrics: 1
- jkrijthe/Rtsne: 1
- Bioconductor/GenomicFeatures: 1
- chanzuckerberg/single-cell-curation: 1
- mlr-org/mlr3measures: 1
- Teichlab/celltypist: 1
- bedops/bedops: 1
- bodenmillergroup/bcexh_scrnaseq: 1
- rich-iannone/DiagrammeR: 1
- bioimaginggroup/bioimagetools: 1
- single-cell-genetics/cellsnp-lite: 1
- pachterlab/sleuth: 1
- zhangyuqing/simulatorz: 1
- gersteinlab/siglasso: 1
- PYangLab/Cepo: 1
- Bioconductor/TENxBrainData: 1
- qupath/qupath: 1
- libscran/scrapbook: 1
- samtools/bcftools: 1
- imb-computational-genomics-lab/ascend: 1
- thomasp85/msgfplus: 1
- scverse/scvi-tools: 1
- gersteinlab/texp: 1
- tidymodels/broom: 1
- GReD-Clermont/CLIFinder: 1
- drisso/singlecellexperiment: 1
- sydneybiox/simbench: 1
- Ensembl/Bio-DB-HTS: 1
- rargelaguet/mouse_organogenesis_10x_multiome_publication: 1
- ManchesterBioinference/GrandPrix: 1
- GuangchuangYu/hexSticker: 1
- arorarshi/survclust: 1
- NKI-CCB/TRANSACT: 1
- OSCA-source/OSCA.multisample: 1
- Bioconductor/Rsamtools: 1
- KCCG/mity: 1
- biobakery/humann: 1
- drieslab/Giotto: 1
- bhklab/xeva: 1
- helenalc/muscat-comparison: 1
- edzer/hexbin: 1
- igvteam/igv: 1
- knncolle/BiocNeighbors: 1
- aws-aemilia-yul/Github-PR-Commit-Integration-Test-DoNotTouch-GitH-MJCD6L4M-v2-prod-ca-central-1: 1
- leekgroup/recount-website: 1
- Illumina/SpliceAI: 1
- mlr-org/mlr3book: 1
- hansenlab/minfi: 1
- illumina/pyflow: 1
- alexcb/rjson: 1
- carmonalab/scIntegrationMetrics: 1
- nignatiadis/ihw: 1
- illumina/nirvana: 1
- PapenfussLab/gridss: 1
- lanagarmire/Asgard: 1
- SydneyBioX/GHIST: 1
- VirtualGL/virtualgl: 1
- aloy/qqplotr: 1
- topepo/sparsediscrim: 1
- aws-aemilia-lhr/Github-PR-Commit-Integration-Test-DoNotTouch-GitH-MJCD6L4M-v1-preprod-eu-west-2: 1
- atahk/pscl: 1
- YuLab-SMU/biomedical-knowledge-mining-book: 1
- songfd2018/DIFseq-Rpackage: 1
- saezlab/progeny: 1
- mhahsler/dbscan: 1
- bowang-lab/scGPT: 1
- SydneyBioX/scMerge: 1
- vanvalenlab/cellsam: 1
- OSCA-source/OSCA.basic: 1
- nodejs/nodejs.org: 1
- baderlab/socialnetworkapp: 1
- Huber-group-EMBL/biomaRt: 1
- lh3/seqtk: 1
- Bioconductor/BiocParallel: 1
Pull requests created
Maintainer
- SydneyBioX/BenchHub: 15
- SydneyBioX/ClassifyR: 9
- SydneyBioX/scClassify: 9
- DarioS/ClassifyR: 5
- SydneyBioX/scFeatures: 4
- SydneyBioX/lisaClust: 3
- SydneyBioX/simpleSeg: 3
- SydneyBioX/spicyR: 3
- SydneyBioX/SpatialDatasets: 2
- SydneyBioX/spicyWorkflow: 2
- sydneybiox/simbench: 1
- SydneyBioX/GHIST: 1
- SydneyBioX/scMerge: 1
- sydneybiox/trainclassifyr: 1
Active Maintainer
Issue Author Associations
- None (635, 89.69%)
- Member (52, 7.34%)
- Contributor (16, 2.26%)
- Owner (5, 0.71%)
Pull Request Author Associations
- Contributor (6, 46.15%)
- None (5, 38.46%)
- Member (2, 15.38%)
Top Issue Labels
- bug (25)
- enhancement (22)
- documentation (12)
- question (9)
- contributions welcome (6)
- doc (5)
- help wanted (5)
- stale (3)
- Bug (2)
- Needs verification (2)
- user support (2)
- perspective (1)
- results.coexpression (1)
- frontend (1)
- backlog (1)