Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / gyorilab/pybiopax issues and pull requests
#53 - Update pc2 URL to use https
Pull Request -
State: closed - Opened by tonywu1999 10 months ago
- 2 comments
#53 - Update pc2 URL to use https
Pull Request -
State: closed - Opened by tonywu1999 10 months ago
- 2 comments
#52 - model_from_pc_query Connection Aborted Error
Issue -
State: closed - Opened by tonywu1999 10 months ago
#52 - model_from_pc_query Connection Aborted Error
Issue -
State: closed - Opened by tonywu1999 10 months ago
#51 - Enable passing encoding
Pull Request -
State: closed - Opened by cthoyt over 1 year ago
#51 - Enable passing encoding
Pull Request -
State: closed - Opened by cthoyt over 1 year ago
#50 - UnicodeDecodeError in windows
Issue -
State: closed - Opened by Crispae over 1 year ago
- 3 comments
#50 - UnicodeDecodeError in windows
Issue -
State: closed - Opened by Crispae over 1 year ago
- 3 comments
#49 - Added pathway_order and next_step to a list
Pull Request -
State: closed - Opened by tmushayahama over 1 year ago
- 4 comments
#49 - Added pathway_order and next_step to a list
Pull Request -
State: closed - Opened by tmushayahama over 1 year ago
- 4 comments
#48 - Add attributes to NucleicAcid reference BioPAX classes
Pull Request -
State: closed - Opened by bgyori almost 2 years ago
#48 - Add attributes to NucleicAcid reference BioPAX classes
Pull Request -
State: closed - Opened by bgyori almost 2 years ago
#47 - regionType for SequenceLocation but not NucleicAcidRegionReference
Issue -
State: closed - Opened by quirinmanz almost 2 years ago
- 2 comments
#47 - regionType for SequenceLocation but not NucleicAcidRegionReference
Issue -
State: closed - Opened by quirinmanz almost 2 years ago
- 2 comments
#46 - Add global tqdm config
Pull Request -
State: closed - Opened by bgyori about 2 years ago
- 1 comment
#46 - Add global tqdm config
Pull Request -
State: closed - Opened by bgyori about 2 years ago
- 1 comment
#45 - Add py.typed
Pull Request -
State: closed - Opened by bgyori about 2 years ago
#45 - Add py.typed
Pull Request -
State: closed - Opened by bgyori about 2 years ago
#44 - Pass tqdm kwargs
Issue -
State: closed - Opened by eggplants about 2 years ago
- 7 comments
#44 - Pass tqdm kwargs
Issue -
State: closed - Opened by eggplants about 2 years ago
- 7 comments
#43 - Provide type information
Issue -
State: closed - Opened by eggplants about 2 years ago
#43 - Provide type information
Issue -
State: closed - Opened by eggplants about 2 years ago
#42 - Make new pypi release
Issue -
State: closed - Opened by matthiaskoenig over 2 years ago
- 1 comment
#42 - Make new pypi release
Issue -
State: closed - Opened by matthiaskoenig over 2 years ago
- 1 comment
#41 - Notebook demonstrating model construction
Pull Request -
State: closed - Opened by bgyori over 2 years ago
#41 - Notebook demonstrating model construction
Pull Request -
State: closed - Opened by bgyori over 2 years ago
#40 - Adding second protein to BioPax model gives TypeError
Issue -
State: closed - Opened by aditya-ml over 2 years ago
- 2 comments
#40 - Adding second protein to BioPax model gives TypeError
Issue -
State: closed - Opened by aditya-ml over 2 years ago
- 2 comments
#39 - Improve BioPAX class attribute documentation
Pull Request -
State: closed - Opened by bgyori over 2 years ago
#39 - Improve BioPAX class attribute documentation
Pull Request -
State: closed - Opened by bgyori over 2 years ago
#38 - Enable passing a list of BioPaxObject to BioPaxModel
Pull Request -
State: closed - Opened by cthoyt over 2 years ago
#38 - Enable passing a list of BioPaxObject to BioPaxModel
Pull Request -
State: closed - Opened by cthoyt over 2 years ago
#37 - Use empty list by default if list-type is None
Pull Request -
State: closed - Opened by bgyori over 2 years ago
#37 - Use empty list by default if list-type is None
Pull Request -
State: closed - Opened by bgyori over 2 years ago
#36 - Example/documentation for creating BioPax from scratch
Issue -
State: closed - Opened by matthiaskoenig over 2 years ago
- 5 comments
#36 - Example/documentation for creating BioPax from scratch
Issue -
State: closed - Opened by matthiaskoenig over 2 years ago
- 5 comments
#35 - Add functions to get database references from a model
Pull Request -
State: closed - Opened by bgyori over 2 years ago
#35 - Add functions to get database references from a model
Pull Request -
State: closed - Opened by bgyori over 2 years ago
#34 - Add utilities for analyzing ontology terms and identifiers in a biopax file
Issue -
State: closed - Opened by cmungall over 2 years ago
- 6 comments
#34 - Add utilities for analyzing ontology terms and identifiers in a biopax file
Issue -
State: closed - Opened by cmungall over 2 years ago
- 6 comments
#33 - Converting BioPAX to signed directed pairwise graph
Issue -
State: closed - Opened by agitter over 2 years ago
- 2 comments
#33 - Converting BioPAX to signed directed pairwise graph
Issue -
State: closed - Opened by agitter over 2 years ago
- 2 comments
#32 - Fix references
Pull Request -
State: closed - Opened by bgyori almost 3 years ago
#32 - Fix references
Pull Request -
State: closed - Opened by bgyori almost 3 years ago
#31 - Add dedicated state of the field section
Pull Request -
State: closed - Opened by bgyori almost 3 years ago
#31 - Add dedicated state of the field section
Pull Request -
State: closed - Opened by bgyori almost 3 years ago
#30 - State of the field section in JOSS paper
Issue -
State: closed - Opened by leonweber almost 3 years ago
- 1 comment
#30 - State of the field section in JOSS paper
Issue -
State: closed - Opened by leonweber almost 3 years ago
- 1 comment
#29 - Paper links to specific notebook version
Pull Request -
State: closed - Opened by bgyori almost 3 years ago
#29 - Paper links to specific notebook version
Pull Request -
State: closed - Opened by bgyori almost 3 years ago
#28 - Visualizing BioPaxModels in Python?
Issue -
State: closed - Opened by dhimmel almost 3 years ago
- 1 comment
#28 - Visualizing BioPaxModels in Python?
Issue -
State: closed - Opened by dhimmel almost 3 years ago
- 1 comment
#27 - Add source files for JOSS submission
Pull Request -
State: closed - Opened by bgyori about 3 years ago
#27 - Add source files for JOSS submission
Pull Request -
State: closed - Opened by bgyori about 3 years ago
#26 - Improve testing, documentation and notebooks
Pull Request -
State: closed - Opened by bgyori about 3 years ago
#26 - Improve testing, documentation and notebooks
Pull Request -
State: closed - Opened by bgyori about 3 years ago
#25 - Synchronize contributions and setup with testing
Pull Request -
State: closed - Opened by bgyori about 3 years ago
#25 - Synchronize contributions and setup with testing
Pull Request -
State: closed - Opened by bgyori about 3 years ago
#24 - Improvements to API and docs
Pull Request -
State: closed - Opened by bgyori about 3 years ago
#24 - Improvements to API and docs
Pull Request -
State: closed - Opened by bgyori about 3 years ago
#23 - Add Pathway Commons traversal demo notebook
Pull Request -
State: closed - Opened by cthoyt about 3 years ago
#23 - Add Pathway Commons traversal demo notebook
Pull Request -
State: closed - Opened by cthoyt about 3 years ago
#22 - API Cleanup
Pull Request -
State: closed - Opened by cthoyt about 3 years ago
#22 - API Cleanup
Pull Request -
State: closed - Opened by cthoyt about 3 years ago
#21 - Add CREEDS analysis
Pull Request -
State: closed - Opened by cthoyt about 3 years ago
- 1 comment
#20 - Add ability to pass tqdm kwargs in API functions
Pull Request -
State: closed - Opened by cthoyt over 3 years ago
- 2 comments
#20 - Add ability to pass tqdm kwargs in API functions
Pull Request -
State: closed - Opened by cthoyt over 3 years ago
- 2 comments
#19 - Update types in I/O functions
Pull Request -
State: closed - Opened by cthoyt over 3 years ago
#19 - Update types in I/O functions
Pull Request -
State: closed - Opened by cthoyt over 3 years ago
#18 - Implement path search based on path string specification
Pull Request -
State: closed - Opened by bgyori over 3 years ago
#17 - Fix tqdm
Pull Request -
State: closed - Opened by bgyori over 3 years ago
#17 - Fix tqdm
Pull Request -
State: closed - Opened by bgyori over 3 years ago
#16 - Implement reverse links as properties
Pull Request -
State: closed - Opened by bgyori over 3 years ago
#16 - Implement reverse links as properties
Pull Request -
State: closed - Opened by bgyori over 3 years ago
#15 - Implement mixin properties and aggregate names
Pull Request -
State: closed - Opened by bgyori over 3 years ago
#15 - Implement mixin properties and aggregate names
Pull Request -
State: closed - Opened by bgyori over 3 years ago
#14 - Add additional BioPAX remote resources
Pull Request -
State: closed - Opened by cthoyt over 3 years ago
- 4 comments
#13 - Add tutorial notebook and contrib guidelines
Pull Request -
State: closed - Opened by bgyori over 3 years ago
#12 - Clean up project metadata
Pull Request -
State: closed - Opened by cthoyt over 3 years ago
#11 - Type annotate code
Pull Request -
State: closed - Opened by cthoyt over 3 years ago
#10 - Make participants of Interactions list-like
Pull Request -
State: closed - Opened by bgyori about 4 years ago
#9 - Interactions with multiple participants
Issue -
State: closed - Opened by annaritz about 4 years ago
- 5 comments
#8 - Migrate from Travis to GitHub Actions
Pull Request -
State: closed - Opened by bgyori about 4 years ago
#7 - Allow specification of file encoding
Pull Request -
State: closed - Opened by cthoyt over 4 years ago
- 1 comment
#6 - Handle the XML-base namespace of models
Pull Request -
State: closed - Opened by bgyori over 4 years ago
#5 - Handle XMLs where objects are embedded
Pull Request -
State: closed - Opened by bgyori over 4 years ago
#4 - Add repr/str for a few classes
Pull Request -
State: closed - Opened by bgyori over 4 years ago
#3 - Updates to BioPAX classes
Pull Request -
State: closed - Opened by bgyori over 4 years ago
#2 - Implement OWL parsing with iterparse
Issue -
State: open - Opened by bgyori over 4 years ago
- 3 comments
#1 - Updates and bug fixes
Pull Request -
State: closed - Opened by bgyori over 4 years ago