Ecosyste.ms: Issues

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GitHub / geneontology/obographs issues and pull requests

#111 - Bump commons-io:commons-io from 2.7 to 2.14.0 in /obographs-core

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies

#110 - missing 'restrictions' property

Issue - State: closed - Opened by balhoff 5 months ago - 3 comments

#108 - Stale AbstractEdge Definition

Issue - State: closed - Opened by iimpulse 8 months ago - 3 comments

#107 - What to do with multiple labels / definitions etc?

Issue - State: open - Opened by matentzn 10 months ago - 1 comment

#106 - create a comprehensive obographs test suite

Issue - State: open - Opened by cmungall about 1 year ago

#105 - Add github actions checks to this repo

Issue - State: closed - Opened by cmungall over 1 year ago - 1 comment

#104 - Add module-info.java in `org.obographs` namespace

Issue - State: open - Opened by julesjacobsen over 1 year ago - 1 comment

#103 - Remove Guava

Issue - State: closed - Opened by julesjacobsen over 1 year ago

#102 - Make "mappings" as a first class property to obographs?

Issue - State: open - Opened by matentzn over 1 year ago - 16 comments

#101 - EPIC: Version 0.4.0

Issue - State: open - Opened by matentzn over 1 year ago - 3 comments

#100 - Missing rdf:type owl:Ontology causes non-intelligible fail

Issue - State: open - Opened by matentzn over 1 year ago - 2 comments

#99 - Bump guava from 28.2-jre to 32.0.0-jre in /obographs-core

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies

#98 - Ch.. Ch.. Ch.. Ch.. Changes...

Pull Request - State: closed - Opened by julesjacobsen almost 2 years ago

#97 - Add a prefixes header

Issue - State: open - Opened by cmungall almost 2 years ago - 7 comments

#95 - Plan to overhaul this repository

Issue - State: open - Opened by cmungall almost 2 years ago - 3 comments

#95 - Plan to overhaul this repository

Issue - State: open - Opened by cmungall almost 2 years ago - 2 comments

#94 - Include a generic structure that captures all untranslatable axioms

Issue - State: open - Opened by cmungall almost 2 years ago - 1 comment

#93 - OBOgraphs fails hard in the presence of complex property expression

Issue - State: closed - Opened by matentzn about 2 years ago - 10 comments

#92 - Improve data model for cross-references

Issue - State: closed - Opened by cthoyt about 2 years ago - 2 comments

#91 - Separate slots for URIs and CURIEs

Issue - State: open - Opened by cthoyt about 2 years ago

#91 - Separate slots for URIs and CURIEs

Issue - State: open - Opened by cthoyt about 2 years ago

#90 - Class declarations w/out further assertions not in serialization

Issue - State: open - Opened by joeflack4 about 2 years ago - 10 comments

#90 - Class declarations w/out further assertions not in serialization

Issue - State: closed - Opened by joeflack4 about 2 years ago - 12 comments

#89 - Should genusIds be optional in logicalDefinitionAxioms?

Issue - State: closed - Opened by matentzn about 2 years ago - 12 comments

#88 - Bump jackson-databind from 2.12.1 to 2.12.7.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#88 - Bump jackson-databind from 2.12.1 to 2.12.7.1

Pull Request - State: open - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#87 - Implement reverse translation from OboGraphs to OWL

Issue - State: open - Opened by cmungall over 2 years ago

#87 - Implement reverse translation from OboGraphs to OWL

Issue - State: open - Opened by cmungall over 2 years ago

#86 - Bump jackson-databind from 2.12.1 to 2.13.4.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#85 - How do I convert an obographs json file into OWL?

Issue - State: closed - Opened by matentzn over 2 years ago - 5 comments

#85 - How do I convert an obographs json file into OWL?

Issue - State: closed - Opened by matentzn over 2 years ago - 5 comments

#84 - What is the canonical captialisation of OBO Graphs?

Issue - State: open - Opened by matentzn over 2 years ago

#84 - What is the canonical captialisation of OBO Graphs?

Issue - State: open - Opened by matentzn over 2 years ago - 5 comments

#82 - Bump jackson-databind from 2.12.1 to 2.12.6.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#81 - Add obographs-cli

Pull Request - State: closed - Opened by julesjacobsen almost 3 years ago

#81 - Add obographs-cli

Pull Request - State: closed - Opened by julesjacobsen almost 3 years ago

#80 - Add a CLI for converting OWL -> JSON

Issue - State: closed - Opened by julesjacobsen almost 3 years ago - 10 comments

#79 - EDAM.owl throwing an exception

Issue - State: closed - Opened by hrshdhgd over 3 years ago - 2 comments

#79 - EDAM.owl throwing an exception

Issue - State: closed - Opened by hrshdhgd over 3 years ago - 2 comments

#78 - Bump guava from 28.2-jre to 29.0-jre in /obographs-core

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#78 - Bump guava from 28.2-jre to 29.0-jre in /obographs-core

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#77 - Bump commons-io from 2.2 to 2.7 in /obographs-core

Pull Request - State: open - Opened by dependabot[bot] over 3 years ago
Labels: dependencies

#77 - Bump commons-io from 2.2 to 2.7 in /obographs-core

Pull Request - State: closed - Opened by dependabot[bot] over 3 years ago - 1 comment
Labels: dependencies

#76 - merge in linkml repo

Issue - State: open - Opened by cmungall over 3 years ago - 1 comment

#76 - merge in linkml repo

Issue - State: open - Opened by cmungall over 3 years ago - 1 comment

#74 - WIP: edge meta annotations

Pull Request - State: closed - Opened by cmungall almost 4 years ago - 3 comments

#73 - Bump guava from 28.2-jre to 29.0-jre

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#73 - Bump guava from 28.2-jre to 29.0-jre

Pull Request - State: open - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#72 - Bump commons-io from 2.2 to 2.7

Pull Request - State: open - Opened by dependabot[bot] almost 4 years ago
Labels: dependencies

#72 - Bump commons-io from 2.2 to 2.7

Pull Request - State: closed - Opened by dependabot[bot] almost 4 years ago - 1 comment
Labels: dependencies

#71 - Datatype Properties not represented as nodes?

Issue - State: open - Opened by kvarforl almost 4 years ago - 1 comment

#70 - Instability in representation of deprecation status in obographs JSON

Issue - State: open - Opened by dosumis over 4 years ago - 7 comments

#69 - Bump junit from 4.12 to 4.13.1

Pull Request - State: closed - Opened by dependabot[bot] over 4 years ago - 1 comment
Labels: dependencies

#68 - Need a property "mergedWith" or something similar for obsolete terms

Issue - State: closed - Opened by matentzn over 4 years ago - 3 comments

#68 - Need a property "mergedWith" or something similar for obsolete terms

Issue - State: closed - Opened by matentzn over 4 years ago - 3 comments

#67 - Immutables

Pull Request - State: closed - Opened by cmungall over 4 years ago - 2 comments

#66 - How to cite

Issue - State: open - Opened by leechuck almost 5 years ago

#64 - Failed tests: PrefixHelperTest.testPrefixHandling

Issue - State: open - Opened by blueharmony almost 5 years ago

#63 - Make ordering more robust and remove empty values from JSON output

Pull Request - State: closed - Opened by julesjacobsen almost 5 years ago - 2 comments

#62 - Issue #47 sort OWLAxioms in FromOwl

Pull Request - State: closed - Opened by julesjacobsen almost 5 years ago

#61 - EquivalentNodesSet.representativeNodeId() is not used in production code

Issue - State: open - Opened by julesjacobsen almost 5 years ago - 1 comment

#60 - Consider using immutables for core classes

Issue - State: closed - Opened by julesjacobsen almost 5 years ago - 13 comments

#59 - Json deserialise

Pull Request - State: closed - Opened by julesjacobsen almost 5 years ago - 1 comment

#59 - Json deserialise

Pull Request - State: closed - Opened by julesjacobsen almost 5 years ago - 1 comment

#58 - running mvn package doesn't work on Java 11

Issue - State: closed - Opened by balhoff almost 5 years ago - 1 comment

#57 - Update travis jdk.

Pull Request - State: closed - Opened by balhoff almost 5 years ago

#56 - Update travis jdk.

Pull Request - State: closed - Opened by balhoff almost 5 years ago - 1 comment

#56 - Update travis jdk.

Pull Request - State: closed - Opened by balhoff almost 5 years ago - 1 comment

#55 - Add gpg arguments for Maven release to work on MacOS 10.14.

Pull Request - State: closed - Opened by balhoff almost 5 years ago

#55 - Add gpg arguments for Maven release to work on MacOS 10.14.

Pull Request - State: closed - Opened by balhoff almost 5 years ago

#54 - Create maven central release for fix of missing synonym type

Issue - State: closed - Opened by pnrobinson about 5 years ago - 4 comments

#53 - Adding synonym type. Fixes #38

Pull Request - State: closed - Opened by cmungall about 5 years ago

#53 - Adding synonym type. Fixes #38

Pull Request - State: closed - Opened by cmungall about 5 years ago

#52 - Check round-trip JSON <-> Object model is possible

Issue - State: closed - Opened by julesjacobsen over 5 years ago - 1 comment

#52 - Check round-trip JSON <-> Object model is possible

Issue - State: closed - Opened by julesjacobsen over 5 years ago - 1 comment

#51 - Add second order annotations

Issue - State: open - Opened by cmungall over 5 years ago

#50 - Help needed: oboInOwl spec vs obographs

Issue - State: open - Opened by matentzn over 5 years ago - 2 comments

#50 - Help needed: oboInOwl spec vs obographs

Issue - State: open - Opened by matentzn over 5 years ago - 2 comments

#49 - Casting error needs to be more informative

Issue - State: open - Opened by matentzn over 5 years ago - 3 comments

#48 - Missing property nodes for preds in go basic

Issue - State: open - Opened by MrCreosote over 5 years ago

#47 - Sort JSON serialisation of obographs

Issue - State: closed - Opened by matentzn over 5 years ago - 29 comments

#46 - Improve semantics of synonym types and subset defs

Issue - State: open - Opened by althonos over 5 years ago - 1 comment

#45 - Fix `RO`-derived URL error in examples

Pull Request - State: closed - Opened by althonos over 5 years ago - 1 comment

#44 - Annotations on xref annotation assertions are not serialized in json

Issue - State: open - Opened by cmungall over 5 years ago - 5 comments

#43 - serializing to JSON leads to OutOfMemory exception

Issue - State: closed - Opened by saramsey almost 6 years ago - 2 comments

#42 - Standard order of JSON serialization

Issue - State: closed - Opened by beckyjackson almost 6 years ago - 3 comments

#41 - FromOwl.generateGraph class cast exception

Issue - State: closed - Opened by beckyjackson almost 6 years ago - 1 comment

#40 - Added missing Meta.getDeprecated()

Pull Request - State: closed - Opened by julesjacobsen about 6 years ago - 4 comments

#39 - Multiple inheritance not parsed to JSON

Issue - State: closed - Opened by danielapoliveira over 6 years ago - 2 comments

#38 - Include synonym types

Issue - State: closed - Opened by cmungall over 6 years ago - 1 comment

#37 - Null pointer with Node.getType()

Issue - State: closed - Opened by pnrobinson over 6 years ago - 3 comments

#36 - Add getType() on node

Issue - State: closed - Opened by cmungall over 6 years ago