Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / biopragmatics/pyobo issues and pull requests

#347 - Switch hierarchy and name API to return references

Pull Request - State: closed - Opened by cthoyt 6 days ago

#346 - Switch to SSSLM

Pull Request - State: closed - Opened by cthoyt 7 days ago

#345 - Reorganize NER code

Pull Request - State: closed - Opened by cthoyt 10 days ago

#344 - Update URI parsing

Pull Request - State: closed - Opened by cthoyt 11 days ago

#343 - Add summarize CLI

Pull Request - State: open - Opened by cthoyt 11 days ago

#342 - Improve error handling in reader

Pull Request - State: closed - Opened by cthoyt 11 days ago

#341 - Refactor `pyobo.Reference`

Pull Request - State: closed - Opened by cthoyt 11 days ago

#340 - Update date parsing

Pull Request - State: closed - Opened by cthoyt 11 days ago

#339 - Handle annotation objects with superfluous datatypes

Pull Request - State: closed - Opened by cthoyt 11 days ago

#338 - Update ICD utilities

Pull Request - State: closed - Opened by cthoyt 12 days ago

#337 - Add prefix summarization

Pull Request - State: closed - Opened by cthoyt 12 days ago

#336 - Add new ChEMBL sources

Pull Request - State: open - Opened by cthoyt 12 days ago

#335 - Update type hints for new beautifulsoup4

Pull Request - State: closed - Opened by cthoyt 13 days ago

#334 - Improve IDSPACES for sources

Pull Request - State: closed - Opened by cthoyt 13 days ago

#333 - Use consistent PURLs in the distributed OWL files

Issue - State: closed - Opened by cmungall 13 days ago - 2 comments

#332 - KEGG Orthology (inquiry)

Issue - State: closed - Opened by jplfaria 20 days ago - 3 comments

#331 - Update column for species in GTDB source

Pull Request - State: closed - Opened by jplfaria 26 days ago - 2 comments

#330 - My pyobo dev

Pull Request - State: closed - Opened by jplfaria 26 days ago - 1 comment

#330 - My pyobo dev

Pull Request - State: closed - Opened by jplfaria 26 days ago - 1 comment

#329 - Improve synonym export

Pull Request - State: closed - Opened by cthoyt 26 days ago

#328 - Correctly handle unspecified synonym scope

Pull Request - State: closed - Opened by cthoyt 29 days ago

#327 - Remove unnecessary definition provenance list

Pull Request - State: closed - Opened by cthoyt 29 days ago

#326 - Add ROR organization classifications

Pull Request - State: closed - Opened by cthoyt 29 days ago

#325 - Update interface for `Stanza.annoate_literal`

Pull Request - State: closed - Opened by cthoyt 29 days ago

#324 - Add language support to synonyms and literal property annotations

Pull Request - State: closed - Opened by cthoyt 29 days ago

#323 - Language support for OBO literals and synonyms

Issue - State: closed - Opened by cthoyt 29 days ago

#322 - Coerce uncompressible URIs in seeAlso relations to literals

Pull Request - State: open - Opened by cthoyt about 1 month ago

#321 - Automatically upgrade lowercase synonym specificities

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#320 - Handle datetimes and creation_date

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#319 - Add NotRequired annotations to typed dicts

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#318 - Add URIs to provenance lists

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#317 - Improve version handling

Pull Request - State: open - Opened by cthoyt about 1 month ago

#316 - Refactor reference passing

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#315 - Use tqdm and cache flags everywhere

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#314 - Fix obonet caching

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#313 - Add flag for turning off caching

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#312 - Refactor API code

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#311 - Add source: ChEMBL Target

Pull Request - State: closed - Opened by cthoyt about 1 month ago
Labels: Nomenclature Data

#310 - Add source: IntAct

Pull Request - State: closed - Opened by cthoyt about 1 month ago - 1 comment
Labels: Nomenclature Data

#309 - Add append contributor shortcut

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#308 - Update stanza types

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#307 - Add ClinicalTrials.gov source

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#306 - Add UMLS STY

Pull Request - State: closed - Opened by cthoyt about 1 month ago
Labels: Nomenclature Data

#305 - Reorganize sources

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#304 - Add PharmGKB sources

Pull Request - State: closed - Opened by cthoyt about 1 month ago
Labels: Nomenclature Data

#303 - Add SIGNOR

Pull Request - State: closed - Opened by cthoyt about 1 month ago
Labels: Nomenclature Data

#302 - Improve sorting

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#301 - Additional improvements for OFN output

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#300 - Simplify CURIE passing in OFN

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#299 - Add autogenerated annotation

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#298 - Update cruft

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#297 - Add optional for emitting declaration labels in OFN

Pull Request - State: open - Opened by cthoyt about 1 month ago

#296 - Don't emit builtin prefixes in OBO

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#295 - Update cruft

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#294 - Cleanup for OFN

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#293 - Add prefix consistency check

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#292 - Update auto-generated ontology CLI

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#291 - Get all prefixes used in an ontology

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#290 - Minor updates to sources

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#289 - Generate IRI and versioned IRI for functional OWL

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#288 - Add doctests to CI

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#287 - Refactor of data and folder structure

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#286 - Generate SSSOM for ICD11 to ICD11 codes

Pull Request - State: closed - Opened by cthoyt about 1 month ago - 4 comments

#285 - Import ICD11 MMS codes

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#284 - Make use of preferred CURIEs more consistent

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#283 - Delete MANIFEST.in

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#282 - Update mapping output

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#281 - Remove xref-types

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#280 - Add additional features to parser

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#279 - Clean up axiom data structure

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#278 - Implement `intersection_of`

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#277 - Improve OBO header handling

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#276 - Improve type annotations for synonym specificity

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#275 - Use None for default specificity

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#275 - Use None for default specificity

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#274 - Use None for default synonym type

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#273 - Refactor term and typedef models

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#273 - Refactor term and typedef models

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#272 - Update cruft

Pull Request - State: closed - Opened by cthoyt about 2 months ago

#272 - Update cruft

Pull Request - State: closed - Opened by cthoyt about 2 months ago

#271 - Initial implement of functional OWL

Pull Request - State: closed - Opened by cthoyt about 2 months ago

#270 - Add turtle export

Pull Request - State: closed - Opened by cthoyt about 2 months ago - 1 comment

#270 - Add turtle export

Pull Request - State: open - Opened by cthoyt about 2 months ago

#269 - Update MSigDB, CCLE, BiGG, NLM, and ROR

Pull Request - State: closed - Opened by cthoyt about 2 months ago

#269 - Update MSigDB, CCLE, BiGG, NLM, and ROR

Pull Request - State: closed - Opened by cthoyt about 2 months ago

#268 - Add helper function for annotating year and update NLM catalog source

Pull Request - State: closed - Opened by cthoyt about 2 months ago

#268 - Add helper function for annotating year and update NLM catalog source

Pull Request - State: closed - Opened by cthoyt about 2 months ago

#267 - Improve sorting of terms and instances

Pull Request - State: open - Opened by cthoyt about 2 months ago

#267 - Improve sorting of terms and instances

Pull Request - State: open - Opened by cthoyt about 2 months ago

#266 - Improve root term handling

Pull Request - State: closed - Opened by cthoyt about 2 months ago

#266 - Improve root term handling

Pull Request - State: closed - Opened by cthoyt about 2 months ago

#265 - Dependency issue with requests_ftp

Issue - State: closed - Opened by bgyori 2 months ago - 1 comment

#264 - Implement axioms on relations, object properties, and xrefs

Pull Request - State: closed - Opened by cthoyt 2 months ago

#263 - Add NLM Catalog and fix default prefix on object properties and annotation properties

Pull Request - State: closed - Opened by cthoyt 2 months ago
Labels: Nomenclature Data

#262 - Add GARD as a source

Pull Request - State: closed - Opened by cthoyt 3 months ago

#261 - Fix default reference output in OBO flat file format

Pull Request - State: closed - Opened by cthoyt 3 months ago

#260 - GARD

Issue - State: closed - Opened by cthoyt 3 months ago
Labels: Nomenclature Data

#259 - Improve typedef parsing

Pull Request - State: closed - Opened by cthoyt 3 months ago

#258 - Reuse Bioregistry's identifier standardization code

Pull Request - State: closed - Opened by cthoyt 3 months ago

#257 - Further consolidate CURIE/URI parsing

Pull Request - State: closed - Opened by cthoyt 3 months ago