biopragmatics/bioregistry issues and pull requests

#914 - Add RDF URI format to `GOCHE`

Pull Request - State: closed - Opened by matentzn about 1 year ago - 1 comment

#913 - Add uri_format to `obo`

Pull Request - State: closed - Opened by matentzn about 1 year ago - 1 comment

#912 - Data science tool idea

Issue - State: open - Opened by cthoyt about 1 year ago

#911 - Add URI format to `obo`

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 2 comments

#910 - Add uri prefix to obo namespace

Issue - State: closed - Opened by matentzn about 1 year ago
Labels: Update

#909 - GOCHE: the case for prefix management in the case of squatting

Issue - State: open - Opened by matentzn about 1 year ago - 4 comments

#908 - Improve text about bananas

Issue - State: open - Opened by cthoyt about 1 year ago

#907 - rebrand bioregistry to be domain-neutral

Issue - State: open - Opened by cmungall about 1 year ago - 2 comments

#906 - Update the OBO context

Pull Request - State: closed - Opened by gouttegd about 1 year ago - 3 comments

#905 - Add Anita as maintainer, changes to DOI, PMID

Pull Request - State: closed - Opened by matentzn about 1 year ago - 1 comment

#904 - Add prefix: babelon

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: Prefix, New

#903 - Add prefix babelon

Issue - State: closed - Opened by matentzn about 1 year ago
Labels: Prefix, New

#902 - Get mappings between external registries

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#901 - Drop py37 support

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#900 - Update minimum versions

Pull Request - State: closed - Opened by cthoyt about 1 year ago

#899 - No version specifier on pydantic breaks downstream packages

Issue - State: closed - Opened by sneakers-the-rat over 1 year ago - 10 comments

#898 - Add additional prefixes for cellosaurus 46

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#897 - ClinicalTrials.gov: 2023 URI update and ctgov prefix

Pull Request - State: closed - Opened by dhimmel over 1 year ago - 5 comments

#896 - Add updates to support CLO mapping curation

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#895 - Update RO

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#894 - Manual maintenance

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#893 - Add Library of Congress Subject Headings

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#892 - KESTREL Curation Updates

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#891 - Update bgee.gene

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#890 - Update the bgee.gene entry

Issue - State: closed - Opened by smoretti over 1 year ago - 1 comment
Labels: Update

#889 - Remove no longer available entries

Issue - State: open - Opened by smoretti over 1 year ago - 2 comments
Labels: Update

#888 - Add ONTIE

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#887 - Add prefix: hl7

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: Prefix, New

#886 - Add prefix HL7

Issue - State: closed - Opened by lnanderson over 1 year ago - 2 comments
Labels: Prefix, New

#885 - Add prefix: aio

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 4 comments
Labels: Prefix, New

#884 - Add prefix AIO

Issue - State: closed - Opened by lnanderson over 1 year ago - 1 comment
Labels: Prefix, New

#883 - Add new ontology collection for AIO

Issue - State: closed - Opened by lnanderson over 1 year ago - 2 comments
Labels: New

#882 - Add kestrelo and update asfis

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#881 - Minor updates to content and alignment

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#880 - Add prefix: ccf

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: Prefix, New

#879 - Add prefix ccf

Issue - State: closed - Opened by bgyori over 1 year ago
Labels: Prefix, New

#878 - New prefix: handle

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#877 - Show preferred prefixes on resource page

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#876 - Add analytics

Pull Request - State: open - Opened by cthoyt over 1 year ago - 1 comment

#875 - Update ontology URLs

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#874 - Mark slow tests with Pytest

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#873 - Add prefix: asfis

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: Prefix, New

#872 - Add prefix [ASFIS]

Issue - State: closed - Opened by ddooley over 1 year ago - 16 comments
Labels: Prefix, New

#871 - preferred prefix is not respected on bioregistry pages

Issue - State: closed - Opened by cmungall over 1 year ago - 1 comment

#870 - Deconflate the sweetrealm entry

Issue - State: open - Opened by cmungall over 1 year ago - 1 comment

#869 - Add echinobase

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#868 - Update ABM uri format

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#867 - Add provider for abm

Issue - State: closed - Opened by bgyori over 1 year ago - 1 comment
Labels: Provider, New

#866 - Updates for SeMRA

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#865 - Add CTIS

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#864 - Add 17 prefixes for clinical trial registries used by WHO

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#863 - Adding logo

Pull Request - State: closed - Opened by Adafede over 1 year ago - 1 comment

#862 - Add prefixes to handle Entrez content

Issue - State: open - Opened by cthoyt over 1 year ago - 2 comments

#861 - Add extra information to Prefix Commons import

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#860 - Add prefix: jgi.proposal

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#859 - Cache compiled re pattern

Pull Request - State: closed - Opened by bgyori over 1 year ago - 2 comments

#858 - Slow identifier validation

Issue - State: closed - Opened by bgyori over 1 year ago

#857 - Add prefix: jgi.proposal

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: Prefix, New

#856 - Resolver for uniprot.isoform

Issue - State: open - Opened by bgyori over 1 year ago - 4 comments

#855 - Add new collection jgi.proposal

Issue - State: closed - Opened by aclum over 1 year ago - 1 comment
Labels: New

#854 - Add prefix: jgi.proposal

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: Prefix, New

#853 - Add prefix JGI

Issue - State: closed - Opened by cmungall over 1 year ago - 2 comments
Labels: Prefix, New

#852 - Make fairsharing_client optional

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#851 - Add prefix: ott

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: Prefix, New

#850 - Add prefix ott

Issue - State: closed - Opened by caufieldjh over 1 year ago - 3 comments
Labels: Prefix, New

#849 - Add BridgeDb prefix and map to bioregistry.schema

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 5 comments

#848 - Add prefix: noyo

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: Prefix, New

#847 - Merge resource `biomagresbank` into `bmrb`

Issue - State: open - Opened by cthoyt over 1 year ago
Labels: Update, Merge

#846 - Clean up import of Biocontext

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#845 - Fix record accumulation

Pull Request - State: closed - Opened by cthoyt over 1 year ago
Labels: bug

#844 - Update Wikidata handling of RDF URI strings

Pull Request - State: closed - Opened by cthoyt over 1 year ago

#843 - Explicitly annotate URI format for RDF usage

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 5 comments

#842 - Add extra curations from SeMRA build

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#841 - Add four new semantic web prefixes

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#840 - Ontology metadata?

Issue - State: closed - Opened by udp over 1 year ago - 2 comments

#839 - Add prefix: noyo

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: Prefix, New

#838 - Add prefix NOYO

Issue - State: closed - Opened by pfabry over 1 year ago - 5 comments
Labels: Prefix, New

#837 - Add logos to data model

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 2 comments

#836 - Add gnps.task

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#835 - Add prefix emsl.project

Issue - State: closed - Opened by cmungall over 1 year ago
Labels: Prefix, New

#834 - Add prefix: emsl.project

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 1 comment
Labels: Prefix, New

#833 - Add prefix gnps.task

Issue - State: closed - Opened by cmungall over 1 year ago
Labels: Prefix, New

#832 - Allow logo URLs for prefixes

Issue - State: closed - Opened by cmungall over 1 year ago

#831 - Update URLs in the registry for epd

Issue - State: closed - Opened by smoretti over 1 year ago - 6 comments
Labels: Update

#830 - Update EPD homepage and URI format

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#829 - Add four DataONE prefixes

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#828 - Add prefix: adcad

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago
Labels: Prefix, New

#827 - Add prefix adcad

Issue - State: closed - Opened by caufieldjh over 1 year ago - 4 comments
Labels: Prefix, New

#826 - Update to OLS4

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#825 - Wikipathways -> WikiPathways

Pull Request - State: closed - Opened by egonw over 1 year ago - 1 comment

#824 - IDMP Ontology investigation

Issue - State: open - Opened by cthoyt over 1 year ago
Labels: Curation

#823 - Improve standardization algorithm

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#822 - Update PPR

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#821 - Missing regular expression

Issue - State: closed - Opened by egonw over 1 year ago - 1 comment
Labels: Update

#820 - Cleanup and weekend curation

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#819 - Update manually

Pull Request - State: closed - Opened by cthoyt over 1 year ago - 1 comment

#818 - WikiPathways ontology and database confused

Issue - State: closed - Opened by egonw over 1 year ago - 7 comments
Labels: Update

#817 - Added Mastodon support

Pull Request - State: closed - Opened by egonw over 1 year ago - 6 comments

#816 - Match upstream name for mondo

Pull Request - State: closed - Opened by egonw over 1 year ago - 1 comment

#815 - Add prefix: hepro

Pull Request - State: closed - Opened by github-actions[bot] over 1 year ago - 4 comments
Labels: Prefix, New

GitHub / biopragmatics/bioregistry issues and pull requests