Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / biopragmatics/bioregistry issues and pull requests

#1015 - Update `glygen`

Pull Request - State: closed - Opened by jeet-vora 10 months ago - 4 comments

#1014 - Update GO standardization tutorial

Pull Request - State: open - Opened by cthoyt 10 months ago - 1 comment

#1013 - Add prefix: metacyc.pathway

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago - 3 comments
Labels: Prefix, New

#1012 - Add prefix metacyc.pathway

Issue - State: closed - Opened by hrshdhgd 10 months ago
Labels: Prefix, New

#1011 - Metacyc pathway does not have a prefix in bioregistry.

Issue - State: closed - Opened by hrshdhgd 10 months ago - 3 comments

#1010 - How do we CURIEfy Metacyc Compound ?

Issue - State: closed - Opened by hrshdhgd 10 months ago - 1 comment

#1009 - MetaCyc reaction does not resolve

Issue - State: open - Opened by hrshdhgd 10 months ago - 2 comments

#1008 - MetaCyc reaction, compound CURIEs don't resolve and pathway prefix missing.

Issue - State: closed - Opened by hrshdhgd 10 months ago - 3 comments

#1007 - Update shex

Pull Request - State: closed - Opened by cthoyt 10 months ago - 1 comment

#1006 - New prefixes: cc and rdfa

Pull Request - State: closed - Opened by cthoyt 10 months ago - 1 comment

#1005 - Add Bioregistry canonical prefixes as synonyms in OBO export

Pull Request - State: closed - Opened by cthoyt 10 months ago - 2 comments

#1004 - New prefix: openWEMI

Pull Request - State: closed - Opened by cthoyt 10 months ago - 1 comment

#1003 - Add case variant synonyms to Orphanet and ORDO

Pull Request - State: open - Opened by cthoyt 10 months ago - 2 comments

#1002 - Add cellguide providers for CL and UBERON

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago

#1001 - Add prefix `cellguide`

Issue - State: closed - Opened by anitacaron 10 months ago - 8 comments

#1000 - Improve new prefix form

Pull Request - State: closed - Opened by cthoyt 10 months ago - 1 comment

#998 - Add prefix: oecd.template

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago - 1 comment
Labels: Prefix, New

#997 - Add prefix oecd.template

Issue - State: closed - Opened by bgyori 10 months ago
Labels: Prefix, New

#996 - Update lab and funding text

Pull Request - State: closed - Opened by cthoyt 10 months ago - 1 comment

#995 - Add prefix: devtox

Pull Request - State: closed - Opened by cthoyt 10 months ago

#994 - Remove unused hierarchical annotation and add additional mismatches

Pull Request - State: closed - Opened by cthoyt 10 months ago

#992 - GitHub actions force pushed and closed PR

Issue - State: open - Opened by bgyori 10 months ago - 1 comment

#991 - Capturing OECD harmonized template terms

Issue - State: closed - Opened by bgyori 10 months ago - 1 comment

#990 - Add prefix: devtox

Pull Request - State: closed - Opened by github-actions[bot] 10 months ago - 1 comment
Labels: Prefix, New

#989 - Add prefix devtox

Issue - State: closed - Opened by bgyori 10 months ago
Labels: Prefix, New

#988 - Add NCBIGene synonym

Pull Request - State: closed - Opened by cthoyt 10 months ago - 1 comment

#987 - Add prefix: mvx

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago - 2 comments
Labels: Prefix, New

#986 - Add prefix for Manufacturers of Vaccines (MVX) code set

Issue - State: closed - Opened by lnanderson 11 months ago - 2 comments
Labels: Prefix, New

#985 - Update Korean Clinical Research Information Service

Issue - State: closed - Opened by lnanderson 11 months ago - 4 comments
Labels: Update

#984 - Add prefix: geneid or nihgeneid

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago
Labels: Prefix, New

#983 - Add prefix nih gene id

Issue - State: closed - Opened by cmrn-rhi 11 months ago - 4 comments
Labels: Prefix, New

#982 - Update NMDC pattern and URI format

Pull Request - State: closed - Opened by cthoyt 11 months ago - 1 comment

#980 - Add NIST CODATA

Pull Request - State: closed - Opened by cthoyt 11 months ago - 1 comment

#979 - Places where Prefix.cc gets used

Issue - State: open - Opened by cthoyt 11 months ago

#978 - Zazuko's Default Ontologies & Prefixes

Issue - State: open - Opened by cthoyt 11 months ago
Labels: External Registry, New

#977 - Implement rewiring

Pull Request - State: closed - Opened by cthoyt 11 months ago - 1 comment

#976 - Rewiring from prescriptive context is ignored

Issue - State: closed - Opened by cthoyt 11 months ago
Labels: bug

#975 - Reimplement CURIE prefix reconciliation for prescriptive contexts

Pull Request - State: closed - Opened by cthoyt 11 months ago - 2 comments

#974 - Refactor converter generation code

Pull Request - State: closed - Opened by cthoyt 11 months ago - 1 comment

#973 - Update OBO in OWL

Pull Request - State: closed - Opened by cthoyt 11 months ago - 2 comments

#972 - Externalize prefix map export implementation

Pull Request - State: closed - Opened by cthoyt 11 months ago - 1 comment

#971 - Add prefix: m4i

Pull Request - State: closed - Opened by github-actions[bot] 11 months ago - 1 comment
Labels: Prefix, New

#970 - Add prefix [m4i]

Issue - State: closed - Opened by Zack-83 11 months ago - 7 comments
Labels: Prefix, New

#969 - Add upper- and lowercase prefix synonyms

Pull Request - State: open - Opened by cthoyt 11 months ago - 2 comments

#968 - Add PubMed and PMC contact and update PMC information

Pull Request - State: closed - Opened by cthoyt 11 months ago - 1 comment

#967 - Identify contact person for PMC

Issue - State: closed - Opened by cthoyt 11 months ago

#966 - Identify contact person for PubMed

Issue - State: closed - Opened by cthoyt 11 months ago

#965 - Update PubMed Central

Issue - State: closed - Opened by sierra-moxon 12 months ago - 11 comments
Labels: Update

#964 - Update PubMed

Issue - State: closed - Opened by sierra-moxon 12 months ago - 1 comment
Labels: Update

#963 - CNCB Database Commons

Issue - State: closed - Opened by cthoyt 12 months ago
Labels: External Registry

#961 - Add voc4cat

Pull Request - State: closed - Opened by cthoyt 12 months ago - 1 comment

#960 - Update PR regex

Pull Request - State: closed - Opened by cthoyt 12 months ago - 9 comments

#959 - Update Protein Ontology regex specification

Issue - State: closed - Opened by nataled 12 months ago - 5 comments
Labels: Update

#958 - Add prefix: voc4cat

Pull Request - State: closed - Opened by github-actions[bot] 12 months ago
Labels: Prefix, New

#957 - Add prefix voc4cat

Issue - State: closed - Opened by dalito 12 months ago - 3 comments
Labels: Prefix, New

#956 - Add additional clinical trial registries

Pull Request - State: closed - Opened by cthoyt 12 months ago - 1 comment

#955 - Web application updates following RRID integration

Pull Request - State: closed - Opened by cthoyt 12 months ago - 1 comment

#954 - Improve incomplete records from RRID

Issue - State: open - Opened by cthoyt 12 months ago - 2 comments
Labels: Curation

#953 - Integrate RRID

Issue - State: closed - Opened by cthoyt 12 months ago
Labels: External Registry

#952 - Align with SciCrunch Registry

Pull Request - State: closed - Opened by cthoyt 12 months ago - 1 comment

#951 - Update RRID homepage and publications

Pull Request - State: closed - Opened by cthoyt 12 months ago - 1 comment

#950 - Add Anita as contact for RRID

Pull Request - State: closed - Opened by cthoyt 12 months ago - 1 comment

#949 - please update my resource listing

Issue - State: closed - Opened by bandrow 12 months ago - 13 comments
Labels: Update

#948 - Fix typo in README

Pull Request - State: closed - Opened by Adafede 12 months ago - 2 comments

#947 - Minimal Information about any Sequence Homepage URL Updates

Issue - State: closed - Opened by lnanderson 12 months ago - 2 comments
Labels: Update

#946 - Fix ENA and INSDC Run directionality

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#945 - Fix BioPortal handling and manually rerun update

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#944 - Improve documentation of URI conflict resolution

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#943 - Add DrugBank vocabularies

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#942 - Add prefix: mediadive.medium

Pull Request - State: closed - Opened by github-actions[bot] about 1 year ago - 1 comment
Labels: Prefix, New

#941 - Add prefix mediadive

Issue - State: closed - Opened by cmungall about 1 year ago - 1 comment
Labels: Prefix, New

#940 - Update miRTarBase entry

Pull Request - State: closed - Opened by bgyori about 1 year ago - 1 comment

#939 - Add OBO PURLs as explicit `uri_format` strings

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#938 - bioproject entry is confusing

Issue - State: closed - Opened by cmungall about 1 year ago

#937 - change `nmdc` url (and relax pattern)

Pull Request - State: closed - Opened by dwinston about 1 year ago - 5 comments

#936 - Add URI prefixes to BAO and CVX

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#935 - Improve EPM export

Issue - State: open - Opened by cthoyt about 1 year ago

#934 - Fix type "maitenance"

Pull Request - State: closed - Opened by matentzn about 1 year ago - 1 comment

#933 - Support multiple parameters in URI formats

Issue - State: closed - Opened by cthoyt about 1 year ago

#932 - Add more CMS provider for SMILES

Pull Request - State: closed - Opened by NishaSharma14 about 1 year ago - 4 comments

#931 - Add provider for [SMILES]

Issue - State: closed - Opened by NishaSharma14 about 1 year ago - 1 comment
Labels: Provider, New

#930 - Fix SSSOM pattern

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 2 comments

#929 - Remap orphanet.ordo in obo context

Pull Request - State: closed - Opened by matentzn about 1 year ago - 4 comments

#928 - Require keywords for all resources

Issue - State: open - Opened by cthoyt about 1 year ago

#927 - The url that resolves the hpath ontology

Issue - State: closed - Opened by ltrainstg about 1 year ago - 3 comments
Labels: Update

#926 - How to tell if a prefix is for an ontology, database, etc.?

Issue - State: open - Opened by webermn about 1 year ago - 3 comments

#925 - Wikidata updates

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#924 - Propogate RDF URI format string to API and update EDAM

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#923 - Registry lacks the "canonical" resource URI

Issue - State: closed - Opened by markwilkinson about 1 year ago - 1 comment

#922 - Update models, responses, and serialization

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#921 - Make explicit cross-version support for Pydantic

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment

#920 - Support pydantic v2

Issue - State: closed - Opened by cmungall about 1 year ago

#919 - Update default bioregistry pages to clearly display URI prefixes

Issue - State: open - Opened by matentzn about 1 year ago
Labels: website

#918 - mirbase links broken

Issue - State: open - Opened by cmungall about 1 year ago - 1 comment

#917 - Any missing prefixes that could be standardised?

Issue - State: closed - Opened by matentzn about 1 year ago - 2 comments

#916 - Explicitly set MONDO `uri_format` with OBO PURL

Pull Request - State: closed - Opened by dhimmel about 1 year ago - 2 comments

#915 - Add Hölzel prefix

Pull Request - State: closed - Opened by cthoyt about 1 year ago - 1 comment