Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / biopragmatics/bioregistry issues and pull requests

#1262 - Remove incorrect `mro` mapping

Pull Request - State: open - Opened by bgyori 4 days ago

#1260 - Add prefix: creativebiolabs

Pull Request - State: open - Opened by nagutm 6 days ago

#1259 - Wrong OLS redirects from cellosaurus

Issue - State: open - Opened by matentzn 7 days ago - 1 comment

#1258 - Fix branch reuse issue in new prefix PR creation workflow

Pull Request - State: open - Opened by nagutm 8 days ago - 4 comments

#1257 - Creative Biolabs - Recombinant Antibodies

Issue - State: open - Opened by garybrandam 10 days ago - 1 comment
Labels: Prefix, New

#1256 - Add `epawaste` subprefixes

Pull Request - State: closed - Opened by nagutm 13 days ago - 2 comments

#1255 - Add prefix: `jecfa`

Pull Request - State: closed - Opened by nagutm 14 days ago - 1 comment

#1254 - Add prefix: `fema`

Pull Request - State: closed - Opened by nagutm 14 days ago - 1 comment

#1253 - Add more strict typing

Pull Request - State: closed - Opened by cthoyt 14 days ago

#1252 - Data updates for obo-db-ingest

Pull Request - State: closed - Opened by cthoyt 14 days ago

#1251 - Update arxiv wikidata URLs to HTTPS

Pull Request - State: closed - Opened by bact 14 days ago - 6 comments

#1250 - Update dpvocab license info

Pull Request - State: closed - Opened by bact 15 days ago - 3 comments

#1249 - New prefix: humap

Pull Request - State: closed - Opened by cthoyt 15 days ago

#1248 - Re-train paper ranking model with data from `curated_papers.tsv`

Pull Request - State: open - Opened by nagutm 15 days ago - 1 comment

#1247 - Register FEMA and JECFA numbers

Issue - State: closed - Opened by bgyori 15 days ago - 5 comments

#1246 - Register EPA hazardous waste numbers

Issue - State: closed - Opened by bgyori 16 days ago - 1 comment

#1245 - Remove incorrect fairsharing mapping from `seed`

Pull Request - State: closed - Opened by cthoyt 16 days ago

#1244 - Rewrite `dpvocab` prefix content

Pull Request - State: closed - Opened by nagutm 17 days ago - 1 comment

#1243 - Remove incorrect mapping from seed to `fairsharing:FAIRsharing.68b03f`

Issue - State: closed - Opened by ialarmedalien 17 days ago - 1 comment
Labels: Prefix, Update

#1242 - Add prefix: gtdb

Pull Request - State: closed - Opened by bgyori 17 days ago
Labels: Prefix, New

#1241 - Add prefix `dpvocab`

Issue - State: closed - Opened by caufieldjh 18 days ago - 2 comments
Labels: Prefix, New

#1240 - Add prefix: dpvocab

Pull Request - State: closed - Opened by github-actions[bot] 18 days ago - 3 comments
Labels: Prefix, New

#1239 - Add prefix gtdb

Issue - State: closed - Opened by ialarmedalien 18 days ago - 1 comment
Labels: Prefix, New

#1238 - Extend `iedb` prefix to multiple semantic subspaces

Pull Request - State: closed - Opened by nagutm 18 days ago - 4 comments

#1237 - ClassyFire: consider making `CHEMONTID` the primary ID space

Issue - State: open - Opened by cmungall 19 days ago - 1 comment

#1235 - Add pandas as web dependency

Pull Request - State: closed - Opened by bgyori 21 days ago - 2 comments

#1234 - Latest docker build broken due to dependencies

Issue - State: closed - Opened by bgyori 21 days ago

#1233 - Update paper_ranking.yml

Pull Request - State: closed - Opened by nagutm 21 days ago - 1 comment

#1232 - Add part_of for discovered families of prefixes

Pull Request - State: open - Opened by bgyori 24 days ago - 1 comment

#1231 - Speed up testing suite

Issue - State: open - Opened by cthoyt 24 days ago

#1230 - Update mycobank URI format

Pull Request - State: closed - Opened by cthoyt 24 days ago

#1229 - mycobank prefixes don't resolve

Issue - State: closed - Opened by CarMoreno 24 days ago - 1 comment

#1228 - Add new provider for `hgnc.symbol`: `g2p`

Pull Request - State: closed - Opened by nagutm 24 days ago - 1 comment

#1227 - Update semi-automated literature curation checks

Pull Request - State: closed - Opened by cthoyt 25 days ago - 2 comments

#1226 - Add linter for markdown

Pull Request - State: closed - Opened by cthoyt 25 days ago

#1225 - Add new provider for `hgnc.symbol`: `cbgda`

Pull Request - State: closed - Opened by nagutm 25 days ago - 4 comments

#1224 - How to curate the Genomics 2 Proteins (G2P) Portal?

Issue - State: closed - Opened by nagutm 25 days ago - 2 comments
Labels: question

#1223 - Add curations to semi-automated literature workflow

Pull Request - State: closed - Opened by nagutm 25 days ago - 3 comments

#1222 - General policy for curating shared information for subdivided prefixes

Issue - State: open - Opened by bgyori 27 days ago - 3 comments

#1221 - Sort publications

Pull Request - State: closed - Opened by cthoyt 27 days ago

#1219 - Add additional data checks

Pull Request - State: closed - Opened by cthoyt 27 days ago - 2 comments

#1218 - Add publication for `omia` snd `omia.variant`

Pull Request - State: closed - Opened by nagutm 27 days ago - 1 comment

#1217 - Add publication for `sgd` and `sgd.pathways`

Pull Request - State: closed - Opened by nagutm 27 days ago - 2 comments

#1216 - Switch from fontawesome to bootstrap icons

Issue - State: open - Opened by cthoyt 28 days ago
Labels: good first issue, website

#1215 - Add prefix: `scancerrna`

Pull Request - State: closed - Opened by nagutm 29 days ago - 4 comments
Labels: Prefix, New

#1214 - Add prefix: `asteraceaegd.plant` and `asteraceaegd.genome`

Pull Request - State: closed - Opened by nagutm 29 days ago - 5 comments
Labels: Prefix, New

#1213 - Address deprecation warnings

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#1212 - Proposal for Bioregistry SOP: "No manual registration of OBO URI prefixes"

Issue - State: open - Opened by matentzn about 1 month ago - 3 comments

#1211 - Update pyproject.toml and use bump-my-version

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#1210 - Generate JSON schema with Pydantic 2

Pull Request - State: open - Opened by cthoyt about 1 month ago

#1209 - Update schema generation to use Pydantic v2

Issue - State: open - Opened by cthoyt about 1 month ago

#1208 - Implement object model for provider publications

Pull Request - State: closed - Opened by bgyori about 1 month ago - 1 comment

#1207 - Extend provider data model

Issue - State: closed - Opened by cthoyt about 1 month ago

#1206 - Failure to parse jaxmice url

Issue - State: open - Opened by cthoyt about 1 month ago
Labels: bug

#1205 - Update documentation build and CI configuration

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#1204 - Extend iedb to multiple semantic spaces

Issue - State: open - Opened by bgyori about 1 month ago - 1 comment
Labels: Update

#1203 - Update project to use cookiecutter-snekpack

Issue - State: open - Opened by cthoyt about 1 month ago

#1202 - Add aipd as a provider for uniprot

Pull Request - State: closed - Opened by nagutm about 1 month ago - 2 comments
Labels: Provider

#1201 - Audit recent python changes

Issue - State: open - Opened by cthoyt about 1 month ago

#1200 - Manual update and resolution of BioDeep issue

Pull Request - State: closed - Opened by cthoyt about 1 month ago - 1 comment

#1199 - Decide on timeline for dropping Pydantic 2

Issue - State: open - Opened by cthoyt about 1 month ago - 2 comments

#1198 - Update minimum Python to 3.9

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#1197 - Fall cleanup

Pull Request - State: closed - Opened by cthoyt about 1 month ago

#1196 - Add prefix: `gmmid`

Pull Request - State: closed - Opened by nagutm about 1 month ago - 2 comments
Labels: Prefix, New

#1195 - Add guide for semi-automated curation workflow

Pull Request - State: open - Opened by nagutm about 1 month ago - 4 comments
Labels: documentation

#1194 - Add pephub prefix

Pull Request - State: closed - Opened by nagutm about 1 month ago - 3 comments
Labels: Prefix, New

#1193 - Update curated papers, add new PDB provider (FURNA).

Pull Request - State: closed - Opened by nagutm about 1 month ago - 12 comments

#1192 - Update HBA and DHBA URI formats

Pull Request - State: closed - Opened by bgyori about 1 month ago

#1191 - Add provider for Developing Human Brain Atlas

Issue - State: closed - Opened by hkir-dev about 1 month ago - 2 comments
Labels: Provider, New

#1190 - Add provider for Human Brain Atlas

Issue - State: closed - Opened by hkir-dev about 1 month ago
Labels: Provider, New

#1189 - Update curated papers list

Pull Request - State: closed - Opened by nagutm about 2 months ago - 2 comments

#1188 - MolMeDB homepage and repository update

Pull Request - State: closed - Opened by DominikMartinat about 2 months ago - 1 comment

#1187 - Update wormbase pattern

Pull Request - State: closed - Opened by nagutm 2 months ago

#1186 - WormBase regex is too restrictive

Issue - State: closed - Opened by cmungall 2 months ago - 1 comment

#1185 - KEGG Brite (BR) hierarchy example does not resolve

Issue - State: open - Opened by cmungall 2 months ago - 4 comments

#1184 - Update `ncbigene` record

Pull Request - State: closed - Opened by bgyori 2 months ago

#1183 - updates for ncbigene

Issue - State: closed - Opened by murphyte 2 months ago - 2 comments
Labels: Update

#1182 - Add prefix: ncbiortholog

Pull Request - State: closed - Opened by github-actions[bot] 2 months ago
Labels: Prefix, New

#1181 - Add prefix ncbiortholog

Issue - State: closed - Opened by murphyte 2 months ago - 15 comments
Labels: Prefix, New

#1180 - Add OMIA as synonym for omia

Pull Request - State: closed - Opened by bgyori 2 months ago

#1179 - Update Online Mendelian Inheritance in Animals

Issue - State: closed - Opened by ImkeTammen 2 months ago - 1 comment
Labels: Update

#1178 - Minor curations and code updates

Pull Request - State: closed - Opened by cthoyt 3 months ago

#1177 - Update coconut pattern

Pull Request - State: closed - Opened by bgyori 3 months ago

#1176 - Update regular expression pattern for COCONUT

Issue - State: closed - Opened by CS76 3 months ago - 1 comment
Labels: Regex, Update

#1175 - Add prefix: obci

Pull Request - State: closed - Opened by github-actions[bot] 3 months ago - 10 comments
Labels: Prefix, New

#1174 - Add prefix "OBCI"

Issue - State: closed - Opened by nataled 3 months ago
Labels: Prefix, New

#1173 - Add reviewer information

Pull Request - State: closed - Opened by lubianat 3 months ago - 1 comment

#1172 - Add new prefix for OMIA variants

Pull Request - State: closed - Opened by marius-mather 3 months ago - 1 comment

#1171 - Add prefixes for researchers

Pull Request - State: closed - Opened by cthoyt 3 months ago

#1170 - `icdo` URI pattern doesn't work anymore

Issue - State: open - Opened by bgyori 3 months ago

#1169 - ICD-O topography codes

Issue - State: open - Opened by bgyori 3 months ago - 1 comment

#1168 - SWO prefixes don't resolve

Issue - State: open - Opened by cmungall 3 months ago - 2 comments

#1167 - Update list of papers

Pull Request - State: closed - Opened by tanayshah2 3 months ago

#1166 - Updated list output for paper ranking workflow

Pull Request - State: closed - Opened by tanayshah2 3 months ago

#1165 - Potentially relevant papers ranked for curation

Issue - State: open - Opened by github-actions[bot] 3 months ago - 3 comments
Labels: paper-ranking-results

#1164 - Update build and debug update workflow

Pull Request - State: closed - Opened by bgyori 3 months ago - 1 comment

#1163 - Paper Ranking Workflow

Pull Request - State: closed - Opened by tanayshah2 3 months ago - 1 comment