Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / biopragmatics/bioregistry issues and pull requests

#1187 - Update wormbase pattern

Pull Request - State: closed - Opened by nagutm 11 days ago

#1186 - WormBase regex is too restrictive

Issue - State: closed - Opened by cmungall 12 days ago - 1 comment

#1185 - KEGG Brite (BR) hierarchy example does not resolve

Issue - State: open - Opened by cmungall 19 days ago - 4 comments

#1184 - Update `ncbigene` record

Pull Request - State: closed - Opened by bgyori 20 days ago

#1183 - updates for ncbigene

Issue - State: closed - Opened by murphyte 20 days ago - 2 comments
Labels: Update

#1182 - Add prefix: ncbiortholog

Pull Request - State: closed - Opened by github-actions[bot] 21 days ago
Labels: Prefix, New

#1181 - Add prefix ncbiortholog

Issue - State: closed - Opened by murphyte 21 days ago - 15 comments
Labels: Prefix, New

#1180 - Add OMIA as synonym for omia

Pull Request - State: closed - Opened by bgyori 24 days ago

#1179 - Update Online Mendelian Inheritance in Animals

Issue - State: closed - Opened by ImkeTammen 24 days ago - 1 comment
Labels: Update

#1178 - Minor curations and code updates

Pull Request - State: closed - Opened by cthoyt 27 days ago

#1177 - Update coconut pattern

Pull Request - State: closed - Opened by bgyori about 1 month ago

#1176 - Update regular expression pattern for COCONUT

Issue - State: closed - Opened by CS76 about 1 month ago - 1 comment
Labels: Regex, Update

#1175 - Add prefix: obci

Pull Request - State: closed - Opened by github-actions[bot] about 1 month ago - 3 comments
Labels: Prefix, New

#1174 - Add prefix "OBCI"

Issue - State: closed - Opened by nataled about 1 month ago
Labels: Prefix, New

#1173 - Add reviewer information

Pull Request - State: closed - Opened by lubianat about 1 month ago - 1 comment

#1172 - Add new prefix for OMIA variants

Pull Request - State: closed - Opened by marius-mather about 1 month ago - 1 comment

#1171 - Add prefixes for researchers

Pull Request - State: closed - Opened by cthoyt about 2 months ago

#1170 - `icdo` URI pattern doesn't work anymore

Issue - State: open - Opened by bgyori about 2 months ago

#1169 - ICD-O topography codes

Issue - State: open - Opened by bgyori about 2 months ago - 1 comment

#1168 - SWO prefixes don't resolve

Issue - State: open - Opened by cmungall about 2 months ago - 2 comments

#1167 - Update list of papers

Pull Request - State: closed - Opened by tanayshah2 about 2 months ago

#1166 - Updated list output for paper ranking workflow

Pull Request - State: closed - Opened by tanayshah2 about 2 months ago

#1165 - Potentially relevant papers ranked for curation

Issue - State: open - Opened by github-actions[bot] about 2 months ago - 2 comments
Labels: paper-ranking-results

#1164 - Update build and debug update workflow

Pull Request - State: closed - Opened by bgyori about 2 months ago - 1 comment

#1163 - Paper Ranking Workflow

Pull Request - State: closed - Opened by tanayshah2 about 2 months ago - 1 comment

#1162 - Remove version prefix for stato in OLS conf

Pull Request - State: closed - Opened by bgyori about 2 months ago

#1161 - Curate amigo provider URL for PO

Pull Request - State: closed - Opened by bgyori about 2 months ago

#1160 - Paper workflow15

Pull Request - State: closed - Opened by tanayshah2 about 2 months ago

#1159 - Fix #424

Pull Request - State: closed - Opened by Adafede about 2 months ago - 4 comments

#1158 - Add prefix: omon

Pull Request - State: closed - Opened by github-actions[bot] 2 months ago - 1 comment
Labels: Prefix, New

#1157 - Add prefix omon

Issue - State: closed - Opened by tomo-oga 2 months ago
Labels: Prefix, New

#1156 - Add prefix omon

Pull Request - State: closed - Opened by tomo-oga 2 months ago

#1155 - Update Biosystems homepage and URL

Pull Request - State: closed - Opened by bgyori 2 months ago

#1154 - Update BioSystems

Issue - State: closed - Opened by egonw 2 months ago - 1 comment
Labels: Update

#1153 - URL pattern Affymetrix Probeset is broken

Issue - State: open - Opened by egonw 2 months ago - 2 comments
Labels: Update

#1152 - Paper workflow2

Pull Request - State: closed - Opened by tanayshah2 2 months ago

#1151 - Added paper ranking workflow

Pull Request - State: closed - Opened by tanayshah2 2 months ago

#1150 - Add prefix: hemonc

Pull Request - State: closed - Opened by github-actions[bot] 2 months ago - 4 comments
Labels: Prefix, New

#1149 - Add prefix hemonc

Issue - State: closed - Opened by bgyori 2 months ago
Labels: Prefix, New

#1148 - Make new prefix issue processing more robust

Pull Request - State: closed - Opened by bgyori 2 months ago

#1147 - Run new prefix requests after debugging

Pull Request - State: closed - Opened by bgyori 2 months ago - 7 comments

#1146 - Add prefix fda.application

Issue - State: closed - Opened by bgyori 2 months ago
Labels: Prefix, New

#1145 - Added new prefixes ciliogenics, coi, ferroliganddb, istransbase

Pull Request - State: closed - Opened by tanayshah2 2 months ago - 1 comment

#1144 - Register Biomarker partnership

Issue - State: open - Opened by bgyori 3 months ago

#1143 - OMIA: adding new URLs/patterns for OMIA entries

Pull Request - State: closed - Opened by marius-mather 3 months ago - 3 comments

#1142 - title_tfidf.py update

Pull Request - State: closed - Opened by tanayshah2 3 months ago - 2 comments

#1141 - Wikidata records

Pull Request - State: closed - Opened by sumirp 3 months ago - 7 comments

#1140 - Add prefix genbase

Pull Request - State: closed - Opened by tanayshah2 3 months ago - 1 comment

#1139 - Add auto_curation.py

Pull Request - State: closed - Opened by tanayshah2 3 months ago

#1138 - Updated example for nlx.dys to functioning one

Pull Request - State: closed - Opened by tanayshah2 3 months ago

#1137 - Add phosphosite.curation

Pull Request - State: closed - Opened by bgyori 3 months ago

#1136 - Add prefix phosphosite.curation

Issue - State: closed - Opened by bgyori 3 months ago - 1 comment
Labels: Prefix, New

#1134 - Update University hospital Medical Information Network Clinical Trial Registry

Issue - State: closed - Opened by tomo-oga 3 months ago - 1 comment
Labels: Update

#1133 - Update noaa.cameo description

Pull Request - State: closed - Opened by bgyori 3 months ago

#1132 - Use PURL as uri_format for UniProt

Pull Request - State: closed - Opened by bgyori 3 months ago

#1131 - Remove incorrect AberOWL mappings from UniProt

Pull Request - State: closed - Opened by bgyori 3 months ago

#1130 - UniProt: Providers merge the `rdf` and `uniprot` providers please

Issue - State: closed - Opened by JervenBolleman 3 months ago - 1 comment

#1129 - Remove incorrect mapping from uniprot to `aberowl:UP`

Issue - State: closed - Opened by JervenBolleman 3 months ago - 1 comment
Labels: Prefix, Update

#1128 - Update omim.ps preferred prefix to OMIMPS in obo context

Pull Request - State: closed - Opened by matentzn 3 months ago - 2 comments

#1127 - Updated logo URLs in Metaregistry

Pull Request - State: closed - Opened by tanayshah2 4 months ago

#1126 - Add provider for Xenbase

Pull Request - State: closed - Opened by bgyori 4 months ago

#1125 - Add alliancegenome.org as provider a for all NHGRI MODs

Issue - State: closed - Opened by cmungall 4 months ago - 4 comments

#1124 - Neuinfo.org URLs not resolving

Issue - State: closed - Opened by bgyori 4 months ago - 9 comments

#1123 - PURLs for some resources not resolving

Issue - State: closed - Opened by bgyori 4 months ago - 5 comments

#1122 - Bioregistry update visualization script

Pull Request - State: closed - Opened by tanayshah2 4 months ago

#1121 - Update WormBase title

Pull Request - State: closed - Opened by bgyori 4 months ago

#1120 - Update Wormbase Gene

Issue - State: closed - Opened by cmungall 4 months ago
Labels: Update

#1119 - Repaired broken URLs in bioregistry.json

Pull Request - State: closed - Opened by tanayshah2 4 months ago

#1118 - Extend testing to Python 3.12

Pull Request - State: closed - Opened by bgyori 4 months ago - 1 comment

#1117 - Broken icon for BioPortal

Pull Request - State: closed - Opened by tanayshah2 4 months ago

#1116 - Update vann URL for changed pattern

Pull Request - State: closed - Opened by bgyori 5 months ago

#1115 - Github actions force closes PR

Issue - State: open - Opened by bgyori 5 months ago - 1 comment

#1114 - Add URI format for uniprot.core

Pull Request - State: closed - Opened by bgyori 5 months ago - 1 comment

#1113 - Add prefix http://purl.uniprot.org/core/

Issue - State: open - Opened by jamesamcl 5 months ago - 9 comments

#1111 - Add prefix: uniprot.mnemonic

Pull Request - State: closed - Opened by github-actions[bot] 5 months ago
Labels: Prefix, New

#1110 - Add prefix uniprot.mnemonic

Issue - State: closed - Opened by bgyori 5 months ago - 4 comments
Labels: Prefix, New

#1109 - Merge glygen into glytoucan

Pull Request - State: closed - Opened by bgyori 5 months ago - 7 comments

#1108 - Update OMIA record

Pull Request - State: closed - Opened by bgyori 5 months ago - 1 comment

#1107 - Contact info bioregisry

Pull Request - State: closed - Opened by ArslaanZahid 5 months ago - 1 comment

#1106 - Add prefix biofactoid

Issue - State: closed - Opened by jvwong 5 months ago - 2 comments
Labels: Prefix, New

#1105 - Update Online Mendelian Inheritance in Animals

Issue - State: closed - Opened by ImkeTammen 5 months ago - 5 comments
Labels: Update

#1103 - Reorganize repository structure

Pull Request - State: closed - Opened by cthoyt 5 months ago - 1 comment

#1102 - Add new contact people

Pull Request - State: closed - Opened by cthoyt 6 months ago

#1101 - Change update schedule to weekly

Pull Request - State: closed - Opened by cthoyt 6 months ago

#1100 - Bioregistry hit project size limit on PyPI

Issue - State: closed - Opened by cthoyt 6 months ago - 2 comments

#1099 - Ingest BioPortal PURLs from `prefixmaps`

Pull Request - State: open - Opened by cthoyt 6 months ago - 1 comment

#1098 - Wikidata database records

Pull Request - State: closed - Opened by sumirp 6 months ago - 2 comments

#1097 - Improve contribution docs

Pull Request - State: closed - Opened by cthoyt 6 months ago

#1096 - Add CLI-based validation of JSON-LD contexts

Pull Request - State: open - Opened by cthoyt 6 months ago

#1095 - Show provenance for annotations in web app

Pull Request - State: open - Opened by cthoyt 6 months ago

#1087 - Add flag to providers denoting first-party

Pull Request - State: closed - Opened by cthoyt 6 months ago

#1084 - Merge resource GlyGen into GlyTouCan

Issue - State: closed - Opened by katewarner 6 months ago - 3 comments
Labels: Update, Merge

#1067 - Add information about linting bioregistry json to CONTRIBUTING page

Issue - State: closed - Opened by cthoyt 6 months ago
Labels: documentation

#1044 - Resolve ncbitaxon on primary provider website

Issue - State: open - Opened by bgyori 8 months ago - 2 comments

#1018 - Improve FAIRsharing import

Pull Request - State: closed - Opened by cthoyt 9 months ago - 1 comment

#1017 - Add Dewey Decimal Classification, AFTOL Categories, and improve BARTOC import

Pull Request - State: closed - Opened by cthoyt 9 months ago - 1 comment

#1016 - Include user-defined tags from FAIRsharing

Issue - State: closed - Opened by cthoyt 10 months ago