Ecosyste.ms: Issues

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GitHub / zyxue/ncbitax2lin issues and pull requests

#25 - How use your script to trace protein ID based on its tax ID？

Issue - State: open - Opened by Xueliang24 almost 2 years ago - 2 comments

#24 - Could not find a version that satisfies the requirement

Issue - State: closed - Opened by ParthKRaval over 2 years ago - 4 comments

#23 - Could not get any output

Issue - State: closed - Opened by eray-sahin over 2 years ago - 4 comments

#22 - support py39

Pull Request - State: closed - Opened by zyxue over 2 years ago

#21 - Error in installation

Issue - State: closed - Opened by binitl over 2 years ago - 1 comment

#20 - Arrange lineages according to taxonomic hierarchy

Issue - State: closed - Opened by josuebarrera almost 3 years ago - 1 comment

#19 - use os.path.join when making tmp_output

Pull Request - State: closed - Opened by zyxue almost 3 years ago

#18 - factored out lineage.py, rewrote multiprocessing to converting tax_id fix #15

Pull Request - State: closed - Opened by zyxue almost 3 years ago

#17 - suggestion: output lineage tax id instead of full name

Issue - State: open - Opened by mewu3 about 3 years ago - 5 comments

#16 - pip install error

Issue - State: closed - Opened by mewu3 about 3 years ago - 1 comment

#15 - KeyError: 1

Issue - State: closed - Opened by bpil83 about 3 years ago - 15 comments

#14 - ~\multiprocessing\pool.py", line 771, in get raise self._value: KeyError: 1

Issue - State: closed - Opened by naurasd almost 4 years ago - 11 comments

#13 - Does this still work with current taxonomy dump?

Issue - State: closed - Opened by tgolubch over 4 years ago - 6 comments

#12 - Error in installation

Issue - State: closed - Opened by zousm912zou over 4 years ago - 3 comments

#11 - make mypy and pylint pass

Pull Request - State: closed - Opened by zyxue over 4 years ago

#10 - make mypy and pylint pass

Pull Request - State: closed - Opened by zyxue over 4 years ago

#9 - adopted poetry, modernized the code (Python-3.7, typing, etc.)

Pull Request - State: closed - Opened by zyxue over 4 years ago

#8 - How to use your script?

Issue - State: closed - Opened by nicolereynolds1 almost 5 years ago - 2 comments

#7 - conda create env fails due to package versions

Issue - State: closed - Opened by splaisan about 5 years ago - 1 comment

#6 - Export no ranks lineage from ncbi files.

Pull Request - State: closed - Opened by tfrcarvalho almost 6 years ago

#5 - fix gzip output error

Pull Request - State: closed - Opened by alienzj about 6 years ago - 1 comment

#4 - problem

Issue - State: closed - Opened by lfaino about 6 years ago - 2 comments

#3 - Can't seem to get this running on my mac

Issue - State: closed - Opened by hepcat72 over 6 years ago - 20 comments

#2 - All taxids

Pull Request - State: closed - Opened by cdebourcy about 7 years ago

#1 - problems with the lineages.csv.gz

Issue - State: closed - Opened by 65degnorth over 7 years ago - 4 comments