Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / zqfang/GSEApy issues and pull requests
#269 - The difference between input gene symbol name and geneID
Issue -
State: open - Opened by lxy04 20 days ago
- 1 comment
#268 - gseaplot how to do to reset the label/NES etc. font size and set the FDR display
Issue -
State: open - Opened by lxy04 about 1 month ago
- 1 comment
#267 - Prerank function not reading gmt files correctly
Issue -
State: closed - Opened by avdl25 about 2 months ago
- 2 comments
#265 - Missing wheels for Python 3.12 on PyPI
Issue -
State: closed - Opened by ecederstrand about 2 months ago
- 2 comments
#263 - Update on singlecell example nb to be compatible with missing edges and isolated nodes
Pull Request -
State: closed - Opened by Alireza-Majd about 2 months ago
#261 - is it able to change the order of cls item
Issue -
State: closed - Opened by hfl112 3 months ago
- 2 comments
#260 - Only last one used when params `gene_sets` is given as list
Issue -
State: closed - Opened by zhouzhendiao 3 months ago
- 2 comments
#259 - Could not return matplotlib.Axes in python script
Issue -
State: open - Opened by AfterDream 3 months ago
- 1 comment
#258 - 'DataFrame' object has no attribute 'append'
Issue -
State: open - Opened by rubickkkkk 3 months ago
- 2 comments
#256 - Using a count matrix with NA values for GSEApy
Issue -
State: open - Opened by LeilyR 3 months ago
- 1 comment
#255 - key error
Issue -
State: open - Opened by anke-king 4 months ago
- 5 comments
#253 - `log2_ratio_of_classes` required number of samples in the group >=3
Issue -
State: closed - Opened by Liripo 4 months ago
- 6 comments
#252 - Prerank fails with list of gene sets
Issue -
State: open - Opened by CDSchuster 4 months ago
- 1 comment
#251 - Error with prerank, after updating to newest version of GSEApy
Issue -
State: closed - Opened by jasiozaucha 4 months ago
- 1 comment
#249 - align gene hits track in TracePlot (fixes zqfang/GSEApy#248)
Pull Request -
State: closed - Opened by 136s 4 months ago
#248 - Incorrect position of hit in gseaplot2 like #222
Issue -
State: closed - Opened by 136s 4 months ago
- 5 comments
#247 - Error running prerank
Issue -
State: closed - Opened by spatts14 4 months ago
- 2 comments
#246 - cannot import GSEApy
Issue -
State: closed - Opened by spatts14 4 months ago
#245 - Error sending data
Issue -
State: open - Opened by mousepixels 5 months ago
- 2 comments
#244 - if Item less than 15, dotplot can't work for GSEA result.
Issue -
State: closed - Opened by li1311139481 5 months ago
- 11 comments
#243 - issues with enrichr
Issue -
State: open - Opened by SaBay89 5 months ago
- 2 comments
#242 - gp.prerank invalid value encountered in scalar divide but this is not true in input
Issue -
State: closed - Opened by carversh 6 months ago
- 3 comments
#241 - Mssing "Term" value when using enrich function with custom gene_sets
Issue -
State: closed - Opened by ttbond 6 months ago
- 1 comment
#240 - Fixed to run prerank without error with rnk (type(pd.Series.name) == str)
Pull Request -
State: closed - Opened by 136s 6 months ago
#239 - Cannot execute Prerank with pandas.Series which type of name is str as rank
Issue -
State: closed - Opened by 136s 6 months ago
- 1 comment
#238 - Corrected odds ratio formula, #237
Pull Request -
State: closed - Opened by 136s 7 months ago
#237 - Odds ratios differ between enrichr and `gseapy.enrich()`
Issue -
State: closed - Opened by 136s 7 months ago
- 3 comments
#236 - Handling genes with zero expression when using gp.gsea
Issue -
State: open - Opened by looppy95 7 months ago
- 1 comment
#235 - Error getting the Enrichr libraries
Issue -
State: open - Opened by talponer 7 months ago
- 7 comments
#234 - TypeError: argument 'genes': 'int' object cannot be converted to 'PyString'
Issue -
State: closed - Opened by Ci-TJ 7 months ago
- 2 comments
#233 - Exited with code=null when apply gseapy for a big .gmt file
Issue -
State: closed - Opened by Sunmile 8 months ago
- 2 comments
#232 - NES values are set to 0
Issue -
State: closed - Opened by alegiac95 8 months ago
- 2 comments
#231 - A question about AttributeError
Issue -
State: open - Opened by chulexuexibiedebushihewo 8 months ago
#230 - column name 'Term' in the second line
Issue -
State: closed - Opened by SherylShaw 8 months ago
- 1 comment
#229 - How to get lead genes from ssGSEA object
Issue -
State: open - Opened by Num0Programmer 8 months ago
- 1 comment
#228 - Interpret GSEA plot
Issue -
State: open - Opened by Cher-HAN 9 months ago
#227 - Update gseapy_tutorial.rst
Pull Request -
State: closed - Opened by abhi-glitchhg 9 months ago
#226 - Suggesting integration of GSVA
Issue -
State: closed - Opened by ftamiro 9 months ago
- 2 comments
#224 - Improvement request for barplot
Issue -
State: closed - Opened by princessEmilyy 9 months ago
- 1 comment
#223 - Can we get correct p-values and FDRs in ssgsea now?
Issue -
State: open - Opened by Peevin 9 months ago
- 1 comment
#222 - The bars in the center panel are misaligned.
Issue -
State: closed - Opened by searchlie 10 months ago
- 2 comments
#221 - Pass filename to traceplot to enable saving
Pull Request -
State: closed - Opened by jfinkle1016 11 months ago
#220 - Traceplot does not save figure
Issue -
State: closed - Opened by jfinkle1016 11 months ago
#219 - ORA (enrichr) by offline doesn't work with Entrez Gene IDs.
Issue -
State: closed - Opened by 136s 11 months ago
- 2 comments
#218 - KeyError: "'de novo' posttranslational protein folding (GO:0051084)"
Issue -
State: closed - Opened by nargesr 11 months ago
- 4 comments
#215 - `gseapy.enrich` still tries to connect to enrichr API and is not fully "offline"
Issue -
State: closed - Opened by bmill3r 12 months ago
- 2 comments
#214 - No module named 'gseapy.gse'
Issue -
State: open - Opened by ShriHarshaAdapalaThirumala 12 months ago
- 6 comments
Labels: FAQ
#213 - Can not import a package after update
Issue -
State: closed - Opened by azbukinanadezda 12 months ago
- 5 comments
#212 - Dotplot annotations
Issue -
State: closed - Opened by BelanaZ 12 months ago
- 1 comment
#211 - Confusion regarding the positive and negative phenotype specification in gsea objects
Issue -
State: closed - Opened by chrissymkcn 12 months ago
- 2 comments
#209 - Getting precise FDR values and plotting if values are 0
Issue -
State: open - Opened by ThomasThaewel about 1 year ago
- 1 comment
Labels: FAQ
#208 - FDR q-val does not preserve ordering of nominal p-values
Issue -
State: closed - Opened by joshscurll about 1 year ago
- 2 comments
#207 - Tests in src/stats.rs reference invalid fields
Issue -
State: closed - Opened by rekado about 1 year ago
- 1 comment
#206 - Replot.gsea_edb_parser() missing 1 required positional argument: 'results_path'
Issue -
State: closed - Opened by yanqiqian about 1 year ago
#204 - How to preserve mouse specific genes when downloading it from get_library()
Issue -
State: closed - Opened by Smilenone about 1 year ago
- 3 comments
#201 - Zeros in GSEA result
Issue -
State: closed - Opened by hfl112 about 1 year ago
- 1 comment
#200 - Matplotlib support failed
Issue -
State: closed - Opened by Skychou-source about 1 year ago
- 2 comments
#197 - two gene sets GSEA, DGSEA module
Issue -
State: open - Opened by abearab about 1 year ago
- 2 comments
#196 - Can I use GSEApy for gene enrichment analysis of non-model organisms?
Issue -
State: closed - Opened by Skychou-source about 1 year ago
- 7 comments
#195 - Dotplot ignoring arguments
Issue -
State: closed - Opened by NicolasSompairac over 1 year ago
- 4 comments
#194 - ssGSEA ignores parameters in 1.0.4
Issue -
State: closed - Opened by verheytb over 1 year ago
- 3 comments
#193 - PanicException: called Option::unwrap() on a None value
Issue -
State: open - Opened by nroak over 1 year ago
- 6 comments
#192 - Over-representation analysis via Enrichr web services error with large gene lists
Issue -
State: closed - Opened by Kev5nJC over 1 year ago
- 2 comments
#191 - New anaconda package install broken
Issue -
State: closed - Opened by nwieder over 1 year ago
- 7 comments
#190 - Genes in Lead_genes and heatmap are wrong when using gene_set permutation
Issue -
State: closed - Opened by kyungtaekLIM over 1 year ago
- 6 comments
Labels: bug, fixed, critical
#189 - Dotplot param type is incorrect
Issue -
State: closed - Opened by radutanasa over 1 year ago
- 1 comment
#186 - Broken link in SingleSampleGSEA normalization documentation
Issue -
State: closed - Opened by JacobBumgarner over 1 year ago
- 1 comment
#185 - Specifying GO term levels OR term size with EnrichR
Issue -
State: open - Opened by sruthi-hub over 1 year ago
Labels: enhancement, New Feature
#184 - Request demo data
Issue -
State: closed - Opened by partrita over 1 year ago
- 2 comments
Labels: done
#183 - ImportError: cannot import name 'enrichment_map' from 'gseapy.plot'
Issue -
State: closed - Opened by partrita over 1 year ago
- 1 comment
#182 - `Biomart().query` returns request status together with results
Issue -
State: closed - Opened by TheoDps over 1 year ago
- 3 comments
#181 - Suggestion: More informative "Gene_set" information in custom Enrichr run
Issue -
State: closed - Opened by dnjst over 1 year ago
- 2 comments
Labels: enhancement
#180 - Sporadic permission error on Windows when running preranked analysis
Issue -
State: closed - Opened by dmitriikamaevqia over 1 year ago
- 2 comments
#179 - unrecognized arguments: -d pathway_enrichment
Issue -
State: closed - Opened by phiweger over 1 year ago
- 2 comments
#178 - gseapy.gsea() is it bug?
Issue -
State: closed - Opened by kirillkrs over 1 year ago
- 2 comments
#175 - error with dotplot()
Issue -
State: closed - Opened by nargesr over 1 year ago
- 7 comments
#174 - Data storage is unstable
Issue -
State: closed - Opened by thomasgaudelet over 1 year ago
- 3 comments
#171 - unable to get ax when calling barplot()
Issue -
State: closed - Opened by nathaliehsieh over 1 year ago
- 2 comments
#170 - pyo3_runtime.PanicException: called `Option::unwrap()` on a `None`
Issue -
State: closed - Opened by kanekalla over 1 year ago
- 6 comments
#169 - Missing plots after running GSEA
Issue -
State: closed - Opened by AnzeLovse over 1 year ago
- 2 comments
#168 - /lib64/libc.so.6: version `GLIBC_2.25' not found
Issue -
State: closed - Opened by HelloWorldLTY over 1 year ago
- 7 comments
#166 - install error on Google Colab
Issue -
State: closed - Opened by samuelpayne over 1 year ago
- 3 comments
#165 - KeyError: 'Adjusted P-value' in dotplot
Issue -
State: closed - Opened by alexlenail almost 2 years ago
- 1 comment
#163 - RUST compiler?
Issue -
State: open - Opened by michaelmather15 almost 2 years ago
- 7 comments
Labels: question, fixed, FAQ
#162 - Why is it possible for a p=0 term to have q=1?
Issue -
State: closed - Opened by searchlie almost 2 years ago
- 10 comments
Labels: bug, fixed, critical
#161 - conda install ERROR: No module Named "gseapy.gse"
Issue -
State: closed - Opened by zqfang almost 2 years ago
Labels: question
#159 - Why I can't draw dotplot with prerank example?
Issue -
State: closed - Opened by MugenQin almost 2 years ago
- 4 comments
#158 - prerank input
Issue -
State: closed - Opened by wangjiawen2013 almost 2 years ago
- 1 comment
#157 - FutureWarning: The frame.append method is deprecated and will be removed from pandas in a future version. Use pandas.concat instead.
Issue -
State: closed - Opened by snewhouse almost 2 years ago
- 1 comment
#154 - Handling multiple classes (and FDR)
Issue -
State: open - Opened by Tomnl almost 2 years ago
- 1 comment
#153 - Exeption: Error analyzing gene list
Issue -
State: closed - Opened by robbiepope almost 2 years ago
- 1 comment
#152 - gmt file
Issue -
State: closed - Opened by pengyan19 about 2 years ago
- 1 comment
#151 - Logging.__init__() got an unexpected keyword argument 'text_color'
Issue -
State: closed - Opened by LCLazari about 2 years ago
- 1 comment
#150 - dotplot Error in line 396 in plot.py
Issue -
State: closed - Opened by solo7773 about 2 years ago
- 1 comment
#149 - ParserError: Too many columns specified: expected 4 and found 1 for Biomart
Issue -
State: closed - Opened by hyjforesight about 2 years ago
- 1 comment
#148 - Fix t-test always returns 1e9 FDR
Pull Request -
State: closed - Opened by Pearcekieser about 2 years ago
- 6 comments
#147 - How can I produce gsea reports for positive and negative for cytoscape?
Issue -
State: closed - Opened by daschukds about 2 years ago
- 5 comments
Labels: New Feature, done
#145 - Apply `black` and `isort`
Pull Request -
State: closed - Opened by cthoyt over 2 years ago
- 5 comments
#144 - issue with biomart
Issue -
State: closed - Opened by LeilyR over 2 years ago
- 1 comment
#142 - Memory leak
Issue -
State: closed - Opened by Floreuzan over 2 years ago
- 3 comments