Ecosyste.ms: Issues

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GitHub / zanglab/SICER2 issues and pull requests

#29 - bedtools bam2bed race condition

Issue - State: open - Opened by skchronicles 5 months ago - 1 comment

#28 - Keeping low number of PCR duplicates

Issue - State: open - Opened by phoebe460 6 months ago

#27 - Error with --significant_reads

Issue - State: closed - Opened by anyang-kevin 7 months ago - 1 comment

#26 - SICER2 program run error

Issue - State: closed - Opened by dkur0006 8 months ago - 1 comment

#24 - Error due to score numpy dtype

Issue - State: closed - Opened by skchronicles 12 months ago - 3 comments

#23 - Why are species and their chromosomes hardcoded ?

Issue - State: open - Opened by vidal-adrien 12 months ago - 3 comments

#22 - Release tag for v1.0.3

Issue - State: open - Opened by apregier over 1 year ago

#21 - ValueError: math domain error

Issue - State: open - Opened by MingLi-929 over 1 year ago

#18 - IndexError while "Determining the score threshold from random background..."

Issue - State: open - Opened by arhickman about 2 years ago - 3 comments

#17 - grep chrom name in the first BED column only

Pull Request - State: open - Opened by darked89 about 2 years ago

#15 - Custom genome adding

Issue - State: closed - Opened by El-Castor over 2 years ago - 1 comment

#14 - Species info for custom genome.

Issue - State: open - Opened by crowja almost 3 years ago - 4 comments

#13 - Bug when names of input treatment and control files are the same

Issue - State: closed - Opened by AlexandreLaverre almost 3 years ago - 1 comment

#12 - how to identify differential peaks between cell lines

Issue - State: open - Opened by pastaxingxin almost 3 years ago

#11 - Writing to /tmp on HPC Clusters

Issue - State: closed - Opened by rpep over 3 years ago - 2 comments

#10 - Not working when chromosome is not starting with "chr"

Issue - State: open - Opened by PFRoux over 3 years ago - 2 comments

#9 - Fix bug with printing messages.

Pull Request - State: closed - Opened by jinyongyoo almost 4 years ago

#7 - New Species -s/--species

Issue - State: closed - Opened by Reig-Valiente almost 4 years ago - 2 comments

#6 - fixed bugs reported

Pull Request - State: closed - Opened by jinyongyoo over 4 years ago

#5 - conda recipe

Issue - State: closed - Opened by mjsteinbaugh over 4 years ago - 2 comments

#4 - Write error when specifying output directory

Issue - State: open - Opened by desireetillo almost 5 years ago

#3 - SICER2 can't run~

Issue - State: closed - Opened by freedog8 almost 5 years ago - 2 comments

#2 - paired-end?

Issue - State: open - Opened by freedog8 almost 5 years ago

#1 - Running SICER2 with biological replicate

Issue - State: closed - Opened by cell101 almost 5 years ago - 5 comments