Issues created

• scverse/scanpy: 8
• scverse/muon: 4
• theislab/scvelo: 4
• satijalab/seurat: 3
• biofam/MOFA2: 2
• danhalligan/islrv2-solutions: 2
• KrishnaswamyLab/PHATE: 2
• loosolab/TOBIAS: 2
• hadley/r-pkgs: 2
• velocyto-team/velocyto.py: 2
• jianhong/ChIPpeakAnno: 2
• tidyverse/ggplot2: 2
• stuart-lab/signac: 2
• jokergoo/circlize_book: 1
• YuLab-SMU/ggtree: 1
• sa-lee/analysis-superintronic: 1
• rstudio/rmarkdown: 1
• mrdbourke/pytorch-deep-learning: 1
• asntech/intervene: 1
• fluentpython/example-code-2e: 1
• jupyterlab/jupyterlab: 1
• cs50/libcs50: 1
• hadley/adv-r: 1
• zanglab/SICER2: 1
• joelgrus/data-science-from-scratch: 1
• linnarsson-lab/loompy: 1
• thomasp85/ggraph: 1
• mlverse/luz: 1
• snystrom/memes: 1
• mlverse/torchvision: 1
• scverse/scvi-tools: 1
• JonathanShor/DoubletDetection: 1
• fchollet/deep-learning-with-python-notebooks: 1
• IndrajeetPatil/ggstatsplot: 1
• deep-learning-with-pytorch/dlwpt-code: 1
• alandefreitas/matplotplusplus: 1
• nx10/httpgd: 1
• mitchelloharawild/hexwall: 1
• skeydan/deep-learning-and-scientific-computing-with-r-torch: 1
• theislab/anndata2ri: 1
• macs3-project/MACS: 1
• slowkow/pytabix: 1
• sagemath/sage: 1
• rstudio/keras3: 1
• dpeerlab/PhenoGraph: 1
• raphaelvallat/pingouin: 1
• MGI-tech-bioinformatics/DNBelab_C_Series_HT_scRNA-analysis-software: 1
• nushell/nushell: 1
• scverse/mudata: 1
• theislab/cellrank: 1
• dpeerlab/Palantir: 1
• r-lib/xml2: 1

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