Ecosyste.ms: Issues

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GitHub / xiezhq/ISEScan issues and pull requests

#48 - PacBio Assemblies stuck at "addNonORFcopy"

Issue - State: open - Opened by olimat17 over 1 year ago - 5 comments

#47 - different results

Issue - State: closed - Opened by illusion-a almost 2 years ago - 2 comments

#46 - UnboundLocalError: local variable 'seqid' referenced before assignment

Issue - State: closed - Opened by IRSINGH27 almost 2 years ago - 1 comment

#45 - Overly large "transposases"

Issue - State: closed - Opened by clb21565 about 2 years ago - 6 comments

#44 - Missing IS families?

Issue - State: closed - Opened by fgaudilliere about 2 years ago - 3 comments

#42 - IS subgroups

Issue - State: closed - Opened by SamuelGreenrod over 2 years ago - 2 comments

#41 - Pangenome file such as inputfile

Issue - State: closed - Opened by Leytoncito over 2 years ago - 7 comments

#40 - Missing output files for 2 assemblies out of a large dataset

Issue - State: closed - Opened by biflorenzi over 3 years ago - 5 comments

#39 - Create LICENSE

Pull Request - State: closed - Opened by xiezhq over 3 years ago

#38 - Temporary files filling up the temp directory

Issue - State: closed - Opened by biflorenzi over 3 years ago - 2 comments

#37 - Add an array or summary, and maybe a bitmap

Issue - State: closed - Opened by Leytoncito over 3 years ago - 1 comment

#36 - Running isescan on a dataset: missing arguments error

Issue - State: closed - Opened by biflorenzi over 3 years ago - 4 comments

#35 - IS identified by ISFinder but not ISEScan

Issue - State: closed - Opened by moiradion over 3 years ago - 4 comments

#34 - can not install using bioconda

Issue - State: closed - Opened by wietse1 over 3 years ago - 1 comment

#33 - Provide results in a standard file format

Issue - State: closed - Opened by oschwengers over 3 years ago - 3 comments

#32 - Remove hard coded 3rd party dependencies

Issue - State: closed - Opened by oschwengers over 3 years ago - 2 comments

#31 - Replace phmmer by diamond

Issue - State: closed - Opened by oschwengers over 3 years ago - 1 comment

#30 - Results in additional subdirectory

Issue - State: closed - Opened by oschwengers over 3 years ago - 4 comments

#29 - Unexpected Insertion Sequence

Issue - State: closed - Opened by vappiah over 3 years ago - 2 comments

#28 - ncopy4is?

Issue - State: closed - Opened by ewilbanks almost 4 years ago - 1 comment

#27 - UnboundLocalError: local variable 'raworfhits' referenced before assignment

Issue - State: closed - Opened by FTouzain almost 4 years ago - 1 comment

#26 - Error when running test data

Issue - State: closed - Opened by stanislasmorand almost 4 years ago - 2 comments

#25 - Error running test data

Issue - State: closed - Opened by jananiharan almost 4 years ago - 9 comments

#24 - error with gcc command

Issue - State: closed - Opened by Arkadiy-Garber almost 4 years ago - 2 comments

#23 - Input sequence that contains multiple interspersed unknown bases

Issue - State: closed - Opened by raven44099 almost 4 years ago - 2 comments

#22 - Using different ORF identification.

Issue - State: closed - Opened by IsaS89 almost 4 years ago - 1 comment

#21 - Question about bps4IS

Issue - State: closed - Opened by Gonzalez-toro about 4 years ago - 1 comment

#20 - ISEScan not available through Bioconda?

Issue - State: closed - Opened by jaipadmakumar about 4 years ago - 10 comments

#19 - How to set number of threads?

Issue - State: closed - Opened by cousins about 4 years ago - 7 comments

#18 - Question about Results

Issue - State: closed - Opened by lancetxiao over 4 years ago - 1 comment

#17 - ISEScan-1.7.1 :: incorrect version number

Issue - State: closed - Opened by EricDeveaud over 4 years ago - 1 comment

#15 - Problems: did not produce the out files even the job was success

Issue - State: closed - Opened by luongphekidz07 over 4 years ago - 1 comment

#14 - library libssw.so not found

Issue - State: closed - Opened by tianrenmaogithub over 4 years ago - 1 comment

#13 - How to run a set of genomes in a row

Issue - State: closed - Opened by manuss11 almost 5 years ago - 3 comments

#12 - Is fasta file with predicted gene sequence OK?

Issue - State: closed - Opened by Xiaojun928 almost 5 years ago - 3 comments

#11 - Problems with FragGeneScan

Issue - State: closed - Opened by giuliodimaria92 about 5 years ago - 8 comments

#10 - Test data not working

Issue - State: closed - Opened by janka2012 over 5 years ago - 1 comment

#9 - Call isescan

Issue - State: closed - Opened by mweberr over 5 years ago - 1 comment

#8 - what is the file4clusterSeqFile4phmmer

Issue - State: closed - Opened by Xiaojun928 over 5 years ago - 3 comments

#7 - Create LICENSE

Pull Request - State: closed - Opened by xiezhq about 6 years ago - 2 comments

#6 - Running from predicted genes

Issue - State: closed - Opened by gvalchca over 6 years ago - 13 comments

#5 - pip install ISEScan

Issue - State: closed - Opened by tseemann over 6 years ago - 5 comments

#4 - Tag a release

Issue - State: closed - Opened by tseemann over 6 years ago - 2 comments

#3 - No IS elements found

Issue - State: closed - Opened by rbeinart almost 7 years ago - 8 comments

#2 - Error

Issue - State: closed - Opened by fengyuchengdu almost 7 years ago - 3 comments

#1 - Remove argparser plus sys and improves

Pull Request - State: closed - Opened by cardangi over 7 years ago