GitHub / tseemann issue stats
Total issues: 691
Total pull requests: 10
Merged pull request: 8
Average time to close issues: 4 months
Average time to close pull requests: 6 months
Average comments per issue: 1.94
Average comments per pull request: 1.0
Issues created
- tseemann/mlst: 22
- tseemann/berokka: 21
- lskatz/mashtree: 19
- ncbi/skesa: 19
- jodyphelan/tbprofiler: 18
- cov-lineages/pangolin: 17
- ctSkennerton/minced: 16
- tseemann/any2fasta: 16
- tseemann/kounta: 15
- MDU-PHL/ngmaster: 15
- MDU-PHL/meningotype: 15
- tseemann/shovill: 14
- tseemann/perl-biotool: 13
- phe-bioinformatics/PHEnix: 13
- bcgsc/ntcard: 12
- tseemann/cgmlst-dists: 12
- tseemann/snp-dists: 11
- tseemann/nullarbor: 11
- tseemann/ekidna: 11
- andrewjpage/tiptoft: 11
- tseemann/barrnap: 10
- sanger-pathogens/seroba: 10
- TimoLassmann/kalign: 9
- phac-nml/sistr_cmd: 9
- shenwei356/csvtk: 9
- schultzm/cris: 9
- ihh/quaff: 9
- gatb/minia: 8
- bebatut/enasearch: 8
- tothuhien/lsd2: 7
- inab/trimal: 7
- MDU-PHL/LisSero: 7
- tseemann/sixess: 6
- hyattpd/Prodigal: 6
- tseemann/VelvetOptimiser: 6
- chapmanb/homebrew-cbl: 6
- snacktavish/TreeToReads: 5
- tseemann/legsta: 5
- opengene/repaq: 5
- ParBLiSS/FastANI: 5
- pmelsted/kmerstream: 4
- ncbi/vadr: 4
- sanger-pathogens/gff3toembl: 4
- drtconway/pykmer: 4
- EvolBioInf/andi: 4
- tseemann/abricate: 4
- lskatz/annapotater: 4
- tseemann/dehomopolymerate: 4
- mjsull/chromatiblock: 3
- evolbioinfo/gotree: 3
- pmelsted/bifrost: 3
- uio-cels/NucDiff: 3
- kblin/ncbi-acc-download: 3
- evolbioinfo/goalign: 3
- gatb/bcalm: 3
- neufeld/pandaseq: 3
- ruhoh/ruhoh.rb: 3
- bbuchfink/diamond: 3
- tseemann/samclip: 3
- dnbaker/dashing: 3
- kblin/ncbi-genome-download: 3
- shenwei356/unikmer: 3
- virus-evolution/gofasta: 3
- lskatz/Bio--Kmer: 3
- rrwick/Unicycler: 3
- mbhall88/rasusa: 3
- iqbal-lab/Mykrobe-predictor: 2
- scottgigante/picopore: 2
- jeffdaily/parasail: 2
- andrewjpage/krocus: 2
- patrickwest/EukRep: 2
- cdcgov/sanitizeme: 2
- nhoffman/fastalite: 2
- Linuxbrew/brew: 2
- tseemann/prokka: 2
- samtools/samtools: 2
- wytamma/open-sci-scroller: 2
- mbhall88/drprg: 2
- schultzm/havic: 2
- Wytamma/write-the: 2
- ecbush/xenoGI: 2
- shenwei356/taxonkit: 2
- seqan/flexbar: 2
- enasequence/cramtools: 2
- mcieslik-mctp/hpseq: 2
- sanger-pathogens/circlator: 2
- sanger-pathogens/saffrontree: 2
- dnbaker/bonsai: 2
- brentp/mosdepth: 2
- gpertea/gffread: 2
- KatyBrown/CIAlign: 2
- linsalrob/fastq-pair: 2
- najoshi/sabre: 2
- biocore/mmvec: 2
- aesheppard/TETyper: 2
- Linuxbrew/legacy-linuxbrew: 2
- iqbal-lab/cortex: 2
- xiezhq/ISEScan: 2
- natir/yacrd: 2
- nextstrain/mpox: 2
- y-256/libdivsufsort: 2
- colelyman/kleuren: 2
- emmahodcroft/cluster-picker-and-cluster-matcher: 2
- GregoryFaust/samblaster: 2
- jordanlab/stringMLST: 2
- schultzm/p2xkit: 2
- guillaumeholley/bloomfiltertrie: 2
- fhcrc/seqmagick: 2
- hdashnow/python_for_bioinformatics: 1
- broadinstitute/pilon: 1
- jodyphelan/tbdb: 1
- ekg/bamprofile: 1
- jonchang/homebrew-biology: 1
- genomematt/xenomapper: 1
- natir/fpa: 1
- bionode/bionode-ncbi: 1
- csmiller/EMIRGE: 1
- LUMC/kPAL: 1
- MDU-PHL/mdu-pytools: 1
- tseemann/homebrew-bioinformatics-linux: 1
- jts/nanopolish: 1
- wwood/OrfM: 1
- andersgs/beast2_constsites: 1
- pha4ge/hAMRonization: 1
- fair-research/bdbag: 1
- dcjones/quip: 1
- citiususc/veryfasttree: 1
- smirarab/ASTRAL: 1
- sjackman/uniqtag: 1
- ekg/ogap: 1
- phac-nml/mob-suite: 1
- nbisweden/emblmygff3: 1
- AndersenLab/VCF-kit: 1
- lh3/fermikit: 1
- onecodex/finch-rs: 1
- chrokh/lit: 1
- oschwengers/asap: 1
- lh3/tabtk: 1
- HadrienG/taxadb: 1
- COMBINE-lab/libgff: 1
- tseemann/phastaf: 1
- jameshadfield/phandango: 1
- guillaumeholley/blastgraph: 1
- bcgsc/nthits: 1
- linsalrob/genbank_to: 1
- tseemann/amplikate: 1
- lskatz/any2index: 1
- shenwei356/rush: 1
- ncbi/ncbi-vdb: 1
- lh3/miniasm: 1
- SamStudio8/gretel: 1
- kevlar-dev/kevlar: 1
- COMBINE-lab/RapClust: 1
- kristyhoran/bohra: 1
- azumakuniyuki/make-perl-code-faster: 1
- bkamins/the-julia-express: 1
- bobay-ochman/conspecifix: 1
- biopython/biopython.github.io: 1
- lskatz/kalamari: 1
- lh3/minimap2: 1
- MonashBioinformaticsPlatform/laxy: 1
- ruanjue/wtdbg2: 1
- mbhall88/lrge: 1
- iqbal-lab/eval_wgs_for_public_health: 1
- ekg/smithwaterman: 1
- nickloman/poredb: 1
- ncbi/ngs: 1
- genetics-statistics/GEMMA: 1
- AdmiralenOla/Scoary: 1
- sanger-pathogens/ariba: 1
- samstudio8/reticulatus: 1
- etetoolkit/ete: 1
- Homebrew/homebrew-linux-dev: 1
- nextstrain/nextclade: 1
- jodyphelan/pathogen-profiler: 1
- ncbi/pgap: 1
- CFSAN-Biostatistics/refchooser: 1
- MonashBioinformaticsPlatform/RNAsik-pipe: 1
- cov-lineages/scorpio: 1
- vitroid/dish: 1
- nhoffman/alnvu: 1
- lh3/trimadap: 1
Pull requests created
Maintainer
- tseemann/mlst: 22
- tseemann/berokka: 21
- tseemann/any2fasta: 16
- tseemann/kounta: 15
- tseemann/shovill: 14
- tseemann/perl-biotool: 13
- tseemann/cgmlst-dists: 12
- tseemann/ekidna: 11
- tseemann/nullarbor: 11
- tseemann/snp-dists: 11
- tseemann/barrnap: 10
- chapmanb/homebrew-cbl: 6
- tseemann/sixess: 6
- tseemann/VelvetOptimiser: 6
- tseemann/legsta: 5
Active Maintainer
Issue Author Associations
- None (422, 61.07%)
- Owner (189, 27.35%)
- Contributor (72, 10.42%)
- Collaborator (7, 1.01%)
- Member (1, 0.14%)
Pull Request Author Associations
- Contributor (8, 80.00%)
- None (2, 20.00%)
Top Issue Labels
- enhancement (139)
- bug (124)
- question (10)
- build-error (4)
- help wanted (3)
- documentation (3)
- wontfix (2)
- fixed (2)
- good first issue (2)
- new feature (2)
- not now (2)
- duplicate (2)
- suggestion (1)
- docs (1)
- t:talk (1)