virus-evolution/gofasta issues and pull requests

#41 - panic: runtime error: index out of range [29899] with length 29899

Issue - State: open - Opened by Xiang-Leo almost 2 years ago - 7 comments
Labels: bug

#40 - Dev

Pull Request - State: closed - Opened by benjamincjackson about 2 years ago

#39 - Dev

Pull Request - State: closed - Opened by benjamincjackson about 2 years ago

#38 - Error: empty fasta file

Issue - State: open - Opened by Jinke233 over 2 years ago - 1 comment

#37 - annotation features from reverse strand

Issue - State: open - Opened by fifthguy over 2 years ago - 7 comments

#36 - Updates help messages

Pull Request - State: closed - Opened by benjamincjackson over 2 years ago

#35 - Dev

Pull Request - State: closed - Opened by benjamincjackson over 2 years ago

#34 - Dev

Pull Request - State: closed - Opened by benjamincjackson almost 3 years ago

#33 - adds a testing workflow

Pull Request - State: closed - Opened by benjamincjackson almost 3 years ago

#32 - How does closest measure IUPAC codes?

Issue - State: closed - Opened by tseemann almost 3 years ago - 1 comment

#31 - Support for max-dist in 'closest' command

Issue - State: open - Opened by tseemann almost 3 years ago - 3 comments

#30 - Better error message for variants

Issue - State: closed - Opened by benjamincjackson about 3 years ago

#29 - Dev

Pull Request - State: closed - Opened by benjamincjackson about 3 years ago

#28 - Mutation missing from output

Issue - State: closed - Opened by mattdmem about 3 years ago - 5 comments
Labels: bug

#27 - no idea...

Pull Request - State: closed - Opened by benjamincjackson about 3 years ago

#26 - changes module name

Pull Request - State: closed - Opened by benjamincjackson about 3 years ago

#25 - Dev

Pull Request - State: closed - Opened by benjamincjackson about 3 years ago

#24 - Dev

Pull Request - State: closed - Opened by benjamincjackson over 3 years ago

#23 - extend genbank parsing / mutation annotation to protein products

Issue - State: closed - Opened by benjamincjackson over 3 years ago - 3 comments
Labels: enhancement

#22 - Handle I/O errors gracefully

Issue - State: closed - Opened by benjamincjackson over 3 years ago

#21 - possible bug in gofasta sam toMultiAlign

Issue - State: closed - Opened by rmcolq over 3 years ago - 8 comments

#20 - What should the coordinate system be for sam indels?

Issue - State: closed - Opened by benjamincjackson over 3 years ago

#19 - node distances for updown

Issue - State: closed - Opened by benjamincjackson over 3 years ago - 2 comments
Labels: enhancement

#18 - Updown distance

Pull Request - State: closed - Opened by benjamincjackson over 3 years ago

#17 - sam indels doesn't read from stdin

Issue - State: closed - Opened by benjamincjackson over 3 years ago

#16 - consolidate fastaio functions

Issue - State: closed - Opened by benjamincjackson over 3 years ago

#15 - updown --reference flag help inaccurate

Issue - State: closed - Opened by benjamincjackson over 3 years ago

#14 - skip secondary mappings in sam indels

Issue - State: closed - Opened by benjamincjackson almost 4 years ago

#13 - Dev

Pull Request - State: closed - Opened by benjamincjackson almost 4 years ago

#12 - increase the test coverage

Issue - State: closed - Opened by benjamincjackson almost 4 years ago

#11 - external licences in the binary

Issue - State: closed - Opened by benjamincjackson almost 4 years ago - 1 comment

#10 - Closest

Pull Request - State: closed - Opened by benjamincjackson almost 4 years ago