therneau/survival issues and pull requests

#285 - Information: coxfit6.c no longer returns imat_i

Issue - State: closed - Opened by jcm6t 29 days ago - 2 comments

#284 - Very long variable names crash model comparison via `anova`

Issue - State: closed - Opened by FBartos about 2 months ago - 1 comment

#283 - Double frailty hard crashes R

Issue - State: closed - Opened by FBartos about 2 months ago - 1 comment

#282 - piecewise hazard model with multi-state outcome

Issue - State: open - Opened by ecpolley 2 months ago - 2 comments

#281 - `survfit` plot KM curve with only n-1 points

Issue - State: closed - Opened by EQUIWDH 2 months ago - 1 comment

#280 - Prevent negative indexing in tmerge().

Pull Request - State: open - Opened by lukaszdaniel 2 months ago

#279 - `survfit.coxphms` Computing state occupancy curves on new data without repeating for every stratum

Issue - State: open - Opened by steliosbl 3 months ago - 2 comments

#278 - `survfitAJ` error with non-uniform starting states on Survival version 3.6-4 and above

Issue - State: open - Opened by steliosbl 3 months ago - 2 comments

#277 - documentation of `survcheck()`

Issue - State: open - Opened by ThomasSoeiro 3 months ago - 4 comments

#276 - `survdiff()` accepts `strata()` when package is attached, but ignores namespace

Issue - State: closed - Opened by xx02al 3 months ago - 5 comments

#275 - fixed typo preventing the use of dosum

Pull Request - State: closed - Opened by DanChaltiel 3 months ago - 1 comment

#274 - `plot(cox.zph(...), panel.first = ...)` does not work

Issue - State: closed - Opened by ThomasSoeiro 3 months ago - 2 comments

#273 - Inconsistent results in `summary.survfit()` depending on the R version and the OS

Issue - State: closed - Opened by DanChaltiel 3 months ago - 8 comments

#272 - `survdiff()` and counting process form data

Issue - State: closed - Opened by ThomasSoeiro 3 months ago - 3 comments

#271 - Prevent indexing integer vector with negative index in tmerge2().

Pull Request - State: closed - Opened by lukaszdaniel 4 months ago - 3 comments

#270 - survreg does not converge

Issue - State: closed - Opened by tdhock 4 months ago - 12 comments

#269 - fixed Efron approximation in coxsurv.c and multihaz

Pull Request - State: open - Opened by SiddRoy 4 months ago

#268 - Incorrect Efron approximation for competing risks

Issue - State: open - Opened by SiddRoy 4 months ago - 2 comments

#267 - Dealing with variable with percentage in cox model

Issue - State: closed - Opened by LeaLe88 5 months ago - 1 comment

#266 - Cox model with percentage interpretation

Issue - State: closed - Opened by LeaLe88 5 months ago - 2 comments

#265 - Veterans Administration Data wrong hazard ratio reported

Issue - State: closed - Opened by aeleuteri 5 months ago - 4 comments

#264 - survfit.coxph doesn't support Surv2-type data

Issue - State: open - Opened by steliosbl 5 months ago - 1 comment

#263 - Segfault with survreg()

Issue - State: closed - Opened by admash 5 months ago - 7 comments

#262 - fix a bug and return individual score function under the null

Pull Request - State: closed - Opened by zhangh12 5 months ago - 4 comments

#261 - predict.coxph expected values incorrect when formula contains pspline term and strata

Issue - State: open - Opened by RobertScott42 6 months ago - 2 comments

#260 - error when tstart != 0

Issue - State: closed - Opened by juliannaharwood 6 months ago - 4 comments

#259 - edit error message in `[.survfit`?

Issue - State: closed - Opened by ThomasSoeiro 6 months ago - 2 comments

#258 - `survift` mentions survcheck flags>0, but `survcheck` returns no flags

Issue - State: closed - Opened by Dpananos 6 months ago - 2 comments

#257 - Discrepancy in header information when using time variables with start and end format?

Issue - State: closed - Opened by camilagazolla 6 months ago - 5 comments

#256 - Example for length of object doesn't execute

Issue - State: closed - Opened by david-cortes 6 months ago - 1 comment

#255 - Standard errors for new data exhibit unexpected behavior

Issue - State: closed - Opened by juliannaharwood 7 months ago - 3 comments

#254 - Partial matching

Pull Request - State: closed - Opened by MichaelChirico 7 months ago - 9 comments

#253 - predict.coxph.penal() gives an error when the model includes strata

Issue - State: open - Opened by unoichi 7 months ago - 2 comments

#252 - Fix partial matching in the code base

Pull Request - State: closed - Opened by MichaelChirico 7 months ago - 2 comments

#251 - predict.coxph wrongly predicts survival for individuals with the event

Issue - State: closed - Opened by rjjanse 8 months ago - 1 comment

#250 - feature request: number of id in time-dependent covariate coxph()

Issue - State: closed - Opened by jaromilfrossard 8 months ago - 2 comments

#249 - Error from concordancefit with strata term when nvar > 1

Issue - State: open - Opened by sritchie73 8 months ago - 1 comment

#248 - stratified predictors in coxph models not recognized by emmeans

Issue - State: open - Opened by mdjpe 8 months ago - 2 comments

#247 - brier with start-stop times failed due to model.extract of "(id)" column

Issue - State: closed - Opened by Shaunson26 8 months ago - 2 comments

#246 - Fixed incorrect dimnames when NA coefficients present

Pull Request - State: closed - Opened by p-schaefer 9 months ago - 1 comment

#245 - vcov(..., complete=F) fails with survreg fit on a nested model

Issue - State: closed - Opened by p-schaefer 9 months ago - 1 comment

#244 - concordance with start/stop data and timewt='S' crashes R

Issue - State: closed - Opened by Shaunson26 9 months ago - 4 comments

#243 - `survfit.coxphms()` produces an error with more than one strata

Issue - State: closed - Opened by samrickman 10 months ago - 2 comments

#242 - interval 2 kaplan meir returns strange confidence intervals

Issue - State: closed - Opened by Dpananos 10 months ago - 2 comments

#241 - Full argument name: special -> specials

Pull Request - State: closed - Opened by pawelru 11 months ago

#240 - Partial argument matching

Issue - State: closed - Opened by pawelru 11 months ago - 1 comment

#239 - Return covariance matrix for the predictions using `predict.coxph`

Issue - State: closed - Opened by darentsai 11 months ago - 1 comment

#238 - Set `SIMPLIFY = FALSE` in `mapply()` calls in `survfit.resid()` functions

Issue - State: closed - Opened by DavidJesse21 11 months ago - 2 comments

#237 - Issue in `survresid.fit()` with finding `formula` and `data` objects (wrong environment?)

Issue - State: closed - Opened by DavidJesse21 12 months ago - 1 comment

#236 - Feature request: Firth correction

Issue - State: closed - Opened by carbocation 12 months ago - 1 comment

#235 - Reference of categorical levels variables when using Step Functions

Issue - State: closed - Opened by myriamziou 12 months ago - 1 comment

#234 - Zero deemed invalid lower bound for interval censored data in survreg with lognormal

Issue - State: closed - Opened by chjackson 12 months ago - 1 comment

#233 - std.err missing from concordance() output object

Issue - State: closed - Opened by baderstine about 1 year ago - 2 comments

#232 - Feature request: support for non-syntactic names in `survfit`

Issue - State: open - Opened by mattsecrest over 1 year ago - 1 comment

#231 - model.frame and model.matrix are not available when a formula is passed to coxph (or survreg)

Issue - State: closed - Opened by philsf over 1 year ago - 2 comments

#230 - Vignette: Minor corrections

Issue - State: closed - Opened by LGraz over 1 year ago - 1 comment

#229 - broken Rd markup

Issue - State: closed - Opened by bastistician over 1 year ago - 1 comment

#228 - "Special trickery for matched case-control data" and ymax in concordancefit()

Issue - State: open - Opened by neilstats over 1 year ago - 2 comments

#227 - Functionality for Fast Univariate Tests of Tabular Input

Issue - State: closed - Opened by DarioS over 1 year ago - 2 comments

#226 - Add `confint()` method for `survfit`objects

Issue - State: closed - Opened by mccarthy-m-g over 1 year ago - 2 comments

#225 - survival::survfit segfaults

Issue - State: closed - Opened by alonme over 1 year ago - 1 comment

#224 - How to calculate profile likelihood CI for HR?

Issue - State: closed - Opened by KaiHTL over 1 year ago - 1 comment

#223 - coxph function tie=exact

Issue - State: closed - Opened by akarito over 1 year ago - 1 comment

#222 - Partial argument matching

Issue - State: closed - Opened by chjackson almost 2 years ago - 1 comment

#221 - Use inplace decrement operator

Pull Request - State: closed - Opened by MichaelChirico almost 2 years ago - 1 comment

#220 - Initialize ctemp to prevent uninitialized value error

Pull Request - State: closed - Opened by MichaelChirico almost 2 years ago - 1 comment

#219 - Create github page with {usethis} package

Issue - State: closed - Opened by brunomioto almost 2 years ago - 3 comments

#218 - Clarification to `coxph` documentation for `robust` and `weights` arguments?

Issue - State: closed - Opened by R-Walmsley about 2 years ago - 2 comments

#217 - Documentation for survfit.object

Issue - State: closed - Opened by deepayan about 2 years ago - 1 comment

#216 - Enhancement: Accessors for Surv Class

Issue - State: closed - Opened by DarioS about 2 years ago - 1 comment

#215 - anova.cph in a nested ANOVA (non-sequential) manner?

Issue - State: closed - Opened by dankirk95 about 2 years ago - 5 comments

#214 - simulate function

Issue - State: open - Opened by mclements over 2 years ago - 1 comment

#213 - Index in `cox_zph`

Pull Request - State: closed - Opened by AlissonRP over 2 years ago - 2 comments

#212 - A question about the documentation

Issue - State: closed - Opened by VitorBSP over 2 years ago - 1 comment

#211 - Using tt() for large (100k) datasets

Issue - State: closed - Opened by jedHK over 2 years ago - 1 comment

#210 - Small Typo Report in `survfit.formula()` Documentation

Issue - State: closed - Opened by ddsjoberg over 2 years ago - 1 comment

#209 - MSc project related

Issue - State: closed - Opened by Whynnie over 2 years ago - 1 comment

#208 - "number of variables != number of variable names" when predicting conditional logistical regression on a formula with minuses

Issue - State: closed - Opened by jfsmenezes over 2 years ago - 1 comment

#207 - Per-sample C-index

Issue - State: closed - Opened by DarioS over 2 years ago - 1 comment

#206 - How variance be calculated in survdiff

Issue - State: closed - Opened by ghowoo over 2 years ago - 3 comments

#205 - error versus warning on interactions without main effects

Issue - State: open - Opened by vanAmsterdam over 2 years ago - 2 comments

#204 - Minor change: avoid partial matching

Pull Request - State: closed - Opened by DanChaltiel over 2 years ago - 2 comments

#203 - Resizing hex sticker in `README.md`

Pull Request - State: closed - Opened by ddsjoberg over 2 years ago

#202 - FR: More documentation on `aareg`

Issue - State: open - Opened by iago-pssjd over 2 years ago - 1 comment

#201 - add p.value in `survdiff`

Pull Request - State: closed - Opened by AlissonRP over 2 years ago

#200 - Allow for error in `survival:::terms.inner()`

Pull Request - State: closed - Opened by ddsjoberg over 2 years ago - 2 comments

#199 - Use of `Surv()` in `coxph()` formula is problematic

Issue - State: closed - Opened by dmurdoch over 2 years ago - 2 comments

#198 - P-value inside `survdiff`

Issue - State: closed - Opened by AlissonRP over 2 years ago - 1 comment

#197 - Wrong number of individuals at "Number at risk"

Issue - State: closed - Opened by ramashka328 over 2 years ago - 1 comment

#196 - C symbol name "coxfit6" not in load table

Issue - State: closed - Opened by jasperzyzhang over 2 years ago - 1 comment

#195 - Enhancement: Highlight Special Patients in Survival Plot

Issue - State: closed - Opened by DarioS over 2 years ago - 1 comment

#194 - Cannot add 2nd Surv object to data frame

Issue - State: closed - Opened by jharcum over 2 years ago - 4 comments

#193 - Survival probability is not monotonically decreased across time

Issue - State: closed - Opened by L-1996-G over 2 years ago - 1 comment

#192 - updating a variable with tdc

Issue - State: closed - Opened by therneau over 2 years ago - 2 comments

#191 - brier Function Not Exported

Issue - State: closed - Opened by DarioS over 2 years ago - 2 comments

#190 - Typo in the documentation for `agreg.fit`

Issue - State: closed - Opened by Feakster over 2 years ago - 1 comment

#189 - Inconsistent results of concordance function

Issue - State: closed - Opened by ScottZimmerman over 2 years ago - 2 comments

GitHub / therneau/survival issues and pull requests