theosanderson/taxonium issues and pull requests

#428 - ENH: Taxonium Electron CLI

Issue - State: open - Opened by corneliusroemer almost 2 years ago - 3 comments

#427 - ENH: Auspice like entropy panel

Issue - State: open - Opened by corneliusroemer almost 2 years ago

#426 - ENH: Show stats for colorings below a selected node

Issue - State: open - Opened by corneliusroemer almost 2 years ago

#425 - BUG: Electron app requires `.gz` compression, uncompressed `.jsonl` doesn't work despite text suggesting it does

Issue - State: open - Opened by corneliusroemer almost 2 years ago - 6 comments

#424 - Avoid a situation where the open button appears before the server is …

Pull Request - State: closed - Opened by theosanderson almost 2 years ago - 1 comment

#423 - ENH: Allow dropping of file into entire Electron Taxonium window

Issue - State: open - Opened by corneliusroemer almost 2 years ago

#422 - DOC: Mention how to unquarantine taxonium for mac in docs

Issue - State: closed - Opened by corneliusroemer almost 2 years ago - 1 comment

#421 - BUG(: Taxonium Electron becomes unquittable upon error (requires manual htop kill)

Issue - State: open - Opened by corneliusroemer almost 2 years ago

#420 - Kill child process explicitly

Pull Request - State: closed - Opened by theosanderson almost 2 years ago - 1 comment

#419 - unique port per taxonium_electron process

Pull Request - State: closed - Opened by theosanderson almost 2 years ago

#418 - Taxonium electron: auto/easy updating

Issue - State: open - Opened by theosanderson almost 2 years ago - 1 comment

#417 - Trigger formatting fixes

Pull Request - State: closed - Opened by theosanderson almost 2 years ago - 1 comment

#416 - Remove NS button for localhost

Pull Request - State: closed - Opened by theosanderson almost 2 years ago - 1 comment

#415 - Taxonium Electron: Load clade in Nextstrain fails

Issue - State: closed - Opened by corneliusroemer almost 2 years ago - 2 comments

#414 - Taxonium Electron: Backend killed when loading nextstrain json

Issue - State: open - Opened by corneliusroemer almost 2 years ago - 5 comments

#413 - Taxonium Electron: Axios error, then it flashes white screen

Issue - State: closed - Opened by corneliusroemer almost 2 years ago - 9 comments

#412 - Taxonium ARM64 is damaged (error by macOS)

Issue - State: closed - Opened by corneliusroemer almost 2 years ago - 18 comments

#411 - Electron

Pull Request - State: closed - Opened by theosanderson almost 2 years ago - 1 comment

#410 - taxoniumtools: search is very slow, maybe create index or hashmap for speedup?

Issue - State: closed - Opened by corneliusroemer almost 2 years ago - 8 comments

#409 - Limit queue on backend

Pull Request - State: closed - Opened by theosanderson almost 2 years ago - 2 comments

#408 - Pre-compute child array?

Issue - State: open - Opened by corneliusroemer almost 2 years ago - 8 comments

#407 - ENH: Publish ARM64 images for taxonium frontend and backend

Issue - State: closed - Opened by corneliusroemer almost 2 years ago - 1 comment

#406 - taxoniumtools `Error: EISDIR: illegal operation on a directory`

Issue - State: closed - Opened by corneliusroemer almost 2 years ago - 17 comments

#405 - Taxoniumtools uses underscore in option names

Issue - State: open - Opened by corneliusroemer almost 2 years ago - 4 comments

#404 - Taxoniumtools does not say what port 5000 is used for, frontend, backend?

Issue - State: closed - Opened by corneliusroemer almost 2 years ago - 4 comments

#403 - Treenome: tree can disappear on disabling

Issue - State: open - Opened by theosanderson almost 2 years ago - 1 comment

#402 - Visual taxonomy refactor

Issue - State: open - Opened by theosanderson almost 2 years ago

#401 - add kvargha as a contributor for code

Pull Request - State: closed - Opened by allcontributors[bot] about 2 years ago - 1 comment

#400 - Add ability to load config in the backend from URL

Pull Request - State: closed - Opened by kvargha about 2 years ago - 2 comments

#399 - Backend Taxonium Read Config From URL

Issue - State: closed - Opened by kvargha about 2 years ago - 5 comments

#398 - add showcase

Pull Request - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#397 - chore: refactor newick_to_taxonium and usher_to_taxonium to reduce code duplication

Issue - State: open - Opened by theosanderson about 2 years ago

#396 - Wiki playground

Pull Request - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#395 - Newick to Taxonium

Pull Request - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#394 - Custom annotation files

Pull Request - State: closed - Opened by amkram about 2 years ago - 9 comments

#393 - Electron app

Issue - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#392 - Refactor config autogen logic into taxonium_data_handling

Pull Request - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#391 - View tool

Pull Request - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#390 - Helper tool for viewing trees

Pull Request - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#389 - Update config_public.json

Pull Request - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#388 - Prevent error from covspectrum integration

Pull Request - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#387 - Avoid shearing things with a clade annotation?

Issue - State: open - Opened by theosanderson about 2 years ago

#386 - warn about chrome on macos

Pull Request - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#384 - BUG: Occasional reloads of tree - potentially out of memory or killed by Safari?

Issue - State: closed - Opened by corneliusroemer about 2 years ago - 8 comments

#372 - ENH: [Allow loading of subtree only,] avoid crashes out of memory

Issue - State: open - Opened by corneliusroemer about 2 years ago - 15 comments

#366 - update

Pull Request - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#365 - Ejected webpack

Pull Request - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#364 - WIP: Major refactor to a reusable component

Pull Request - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#364 - WIP: Major refactor to a reusable component

Pull Request - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#352 - [pre-commit.ci] pre-commit autoupdate

Pull Request - State: closed - Opened by pre-commit-ci[bot] about 2 years ago - 1 comment

#345 - Experimenting with refactoring tb

Pull Request - State: open - Opened by theosanderson about 2 years ago - 7 comments

#344 - Alternate option for treenome hover

Pull Request - State: closed - Opened by amkram about 2 years ago - 7 comments

#342 - Add hover for treenome

Pull Request - State: open - Opened by theosanderson about 2 years ago - 1 comment

#342 - Add hover for treenome

Pull Request - State: open - Opened by theosanderson about 2 years ago - 1 comment

#339 - zoomToSearch all

Pull Request - State: open - Opened by theosanderson about 2 years ago - 1 comment

#339 - zoomToSearch all

Pull Request - State: open - Opened by theosanderson about 2 years ago - 1 comment

#333 - attempt to fix out of order search

Pull Request - State: closed - Opened by theosanderson about 2 years ago - 1 comment

#328 - Newick export

Issue - State: open - Opened by theosanderson about 2 years ago - 2 comments

#300 - Try to surface CORS errors

Pull Request - State: open - Opened by theosanderson about 2 years ago - 1 comment

#300 - Try to surface CORS errors

Pull Request - State: open - Opened by theosanderson about 2 years ago - 1 comment

#278 - Tweak "powered by" alignment

Pull Request - State: open - Opened by richardgoater over 2 years ago - 1 comment

#278 - Tweak "powered by" alignment

Pull Request - State: open - Opened by richardgoater over 2 years ago - 1 comment

#268 - ENH: Add scale for divergence/mutations

Issue - State: open - Opened by corneliusroemer over 2 years ago - 5 comments

#265 - Draft: animated horizontal zoom

Pull Request - State: open - Opened by theosanderson over 2 years ago - 1 comment

#265 - Draft: animated horizontal zoom

Pull Request - State: open - Opened by theosanderson over 2 years ago - 1 comment

#261 - Hover over names

Pull Request - State: open - Opened by theosanderson over 2 years ago - 5 comments

#261 - Hover over names

Pull Request - State: open - Opened by theosanderson over 2 years ago - 5 comments

#256 - ENH: Provide strain metadata when hovering over name, not just over tip/leaf

Issue - State: open - Opened by corneliusroemer over 2 years ago - 5 comments

#159 - Draft: avro experimentation

Pull Request - State: open - Opened by theosanderson over 2 years ago - 1 comment

#159 - Draft: avro experimentation

Pull Request - State: open - Opened by theosanderson over 2 years ago - 1 comment

#86 - Add an x-axis

Issue - State: open - Opened by theosanderson almost 3 years ago - 1 comment

#13 - React library

Issue - State: closed - Opened by chaoran-chen about 3 years ago - 4 comments

GitHub / theosanderson/taxonium issues and pull requests