GitHub / corneliusroemer issue stats
Total issues: 1,621
Total pull requests: 1,335
Merged pull request: 814
Average time to close issues: 5 months
Average time to close pull requests: 25 days
Average comments per issue: 1.86
Average comments per pull request: 1.16
Issues created
- loculus-project/loculus: 248
- nextstrain/nextclade: 134
- nextstrain/augur: 81
- mamba-org/mamba: 38
- pathoplexus/pathoplexus: 37
- theosanderson/taxonium: 36
- nextstrain/auspice: 36
- nextstrain/cli: 30
- neherlab/nextclade_data_workflows: 27
- ncbi/datasets: 26
- genspectrum/cov-spectrum-website: 25
- neherlab/ncov-simple: 22
- bioconda/bioconda-recipes: 21
- iqtree/iqtree2: 20
- genspectrum/lapis: 19
- genspectrum/lapis-silo: 18
- snakemake/snakefmt: 17
- prefix-dev/pixi: 17
- snakemake/snakemake: 16
- sars-cov-2-variants/lineage-proposals: 16
- pathoplexus/ena-submission: 14
- conda-forge/staged-recipes: 14
- nextstrain/conda-base: 14
- neherlab/treetime: 12
- lenaschimmel/sc2rf: 12
- pola-rs/polars: 11
- nextstrain/mpox: 10
- iqtree/cmaple: 8
- withastro/astro: 8
- genspectrum/lapis-silo-e2e: 8
- microsoft/vscode: 8
- micb25/rki_monkeypox: 7
- enasequence/webin-cli: 7
- eringill/chronic_infection_python: 7
- genspectrum/mpox-spectrum-website: 7
- conda-forge/ldc-feedstock: 7
- nextstrain/docker-base: 7
- biopython/biopython: 6
- AnswerDotAI/fasthtml: 6
- yatisht/usher: 6
- argoproj/argo-cd: 6
- simonw/csv-diff: 6
- tldr-pages/tldr: 6
- google-gemini/gemini-cli: 6
- GyulyVGC/sniffnet: 6
- codespell-project/codespell: 5
- bioconda/bioconda-utils: 5
- keycloak/keycloak: 5
- cov-lineages/pango-designation: 5
- nextstrain/forecasts-ncov: 5
- pathoplexus/loculus_deployments: 5
- keycloakify/keycloakify: 5
- conda-forge/ncbi-datasets-cli-feedstock: 5
- conda/conda: 5
- nextstrain/docs.nextstrain.org: 5
- robert-koch-institut/SARS-CoV-2-Sequenzdaten_aus_Deutschland: 5
- bede/deacon: 5
- sars-cov-2-variants/sequencing-artifacts: 4
- nextstrain/rubella: 4
- nextstrain/ncov-ingest: 4
- dependabot/dependabot-core: 4
- conda-forge/xopen-feedstock: 4
- nextstrain/nextclade_data: 4
- Azure/setup-helm: 4
- vercel/hyper: 4
- nextstrain/rsv: 4
- ynqa/jnv: 4
- Polymarket/poly-market-maker: 4
- astral-sh/ruff: 4
- cov-lineages/pangolearn: 4
- mpxv-lineages/lineage-designation: 4
- mamba-org/setup-micromamba: 4
- GenSpectrum/dashboards: 4
- rust-bio/rust-bio: 4
- nextstrain/ncov-clades-schema: 3
- epi2me-labs/wf-artic: 3
- Homebrew/brew: 3
- microsoft/vscode-python: 3
- corneliusroemer/bioconda-sync-monitor: 3
- ajakubek/python-llist: 3
- cli/cli: 3
- Swiss-Mac-User/macOS-scripted-setup: 3
- corneliusroemer/pango_aliasor: 3
- pypa/pipx: 3
- htop-dev/htop: 3
- domoritz/arrow-tools: 3
- corneliusroemer/nwk-formatter: 3
- diepthihoang/mpboot: 3
- conda-forge/polars-feedstock: 3
- Homebrew/homebrew-cask: 3
- conda-forge/tsv-utils-feedstock: 3
- nspady/google-calendar-mcp: 3
- tng/please-cli: 3
- mswjs/msw: 3
- SalesforceAIResearch/gift-eval: 3
- WyriHaximus/github-action-helm3: 3
- nextstrain/auspice.us: 3
- nextflow-io/nextflow: 3
- cldellow/csv2parquet: 3
- nextstrain/status: 3
- lewagon/wait-on-check-action: 3
- antonmedv/fx: 3
- exelban/stats: 3
- cov-lineages/lineages-website: 3
- nextstrain/.github: 3
- aws/aws-cli: 3
- aineniamh/snipit: 3
- typosquatter/ail-typo-squatting: 3
- corneliusroemer/trait-reconstruction: 2
- meteostat/meteostat-server: 2
- springdoc/springdoc-openapi: 2
- TurakhiaLab/rivet: 2
- joemccann/dillinger: 2
- broadinstitute/pyro-cov: 2
- ishepard/pydriller: 2
- bigskysoftware/htmx: 2
- pathoplexus/curation_reports: 2
- corneliusroemer/nextclade-full-run: 2
- squidfunk/mkdocs-material: 2
- ComPWA/mirrors-taplo: 2
- cov-lineages/scorpio: 2
- pandas-dev/pandas: 2
- tailwindlabs/headlessui: 2
- pycompression/xopen: 2
- rust-lang/rust-analyzer: 2
- conda-forge/julia-feedstock: 2
- blab/pathogen-embed: 2
- enasequence/read_docs: 2
- k3d-io/k3d: 2
- AlisdairO/pgexercises: 2
- answerdotai/fasthtml-example: 2
- citiususc/veryfasttree: 2
- starship/starship: 2
- intel/isa-l: 2
- dilshod/xlsx2csv: 2
- nextstrain/ncov: 2
- conda-forge/nbdev-feedstock: 2
- dashaun/paketo-arm64: 2
- sequence-review/mpox: 2
- mbhall88/compression_benchmark: 2
- veg/hyphy: 2
- hedyorg/hedy: 2
- bioconda/bioconda-docs: 2
- mittwald/kubernetes-secret-generator: 2
- rusq/slackdump: 2
- raviqqe/muffet: 2
- conda-forge/mafft-feedstock: 2
- marocchino/validate-dependabot: 2
- amazon-science/chronos-forecasting: 2
- gautamkrishnar/socli: 2
- simonw/ospeak: 2
- fastai/nbdev: 2
- theosanderson/codon2nucleotide: 2
- electron/mksnapshot: 2
- NicolaDM/MAPLE: 2
- hroptatyr/sample: 2
- python/cpython: 2
- corneliusroemer/pango-sequences: 2
- apache/arrow: 2
- ymyzk/mypy-playground: 1
- microsoft/vscode-cpptools: 1
- editorconfig/editorconfig.github.com: 1
- conda-forge/micromamba-feedstock: 1
- aws-aemilia-cdg/Github-PR-Commit-Integration-Test-DoNotTouch-GitH-MJCD6L4M-v1-preprod-eu-west-3: 1
- k3s-io/docs: 1
- COMBINE-lab/lr_quant_benchmarks: 1
- simeji/jid: 1
- nextstrain/ncov-simple: 1
- all-contributors/allcontributors.org: 1
- 23andMe/Yamale: 1
- nextstrain/yellow-fever: 1
- conda-forge/grpc-cpp-feedstock: 1
- jbloomlab/SARS2-mut-fitness: 1
- pola-rs/polars-web: 1
- rust-lang/rustup: 1
- rust-lang/mdBook: 1
- nabijaczleweli/cargo-update: 1
- mstange/samply: 1
- conda-forge/gfortran_impl_osx-64-feedstock: 1
- fastapi/typer: 1
- corneliusroemer/rki-abwasser-reports: 1
- bioconda/bioconda-stats: 1
- shenwei356/seqkit: 1
- simonw/llm: 1
- qwenlm/qwen-code: 1
- jbloomlab/SARS2-RBD-escape-calc: 1
- astral-sh/uv: 1
- withastro/adapters: 1
- google/grr: 1
- psf/requests: 1
- nextstrain/measles: 1
- conda-forge/requests-feedstock: 1
- threeal/cmake-action: 1
- kruftmeister/go-excusegen: 1
- AndrewVos/endless-toil: 1
- themesberg/flowbite-react: 1
- mamba-org/boa: 1
- anthropics/claude-code: 1
- ota-meshi/eslint-plugin-astro: 1
- televator-apps/vimari: 1
- murrellgroup/lineages: 1
- hedgedoc/meta-marked: 1
- git-ecosystem/git-credential-manager: 1
- mdx-js/mdx-analyzer: 1
- pycompression/python-isal: 1
- tstack/lnav: 1
- wong2/chatgpt-google-extension: 1
- michaeleisel/zld: 1
- kaspermarstal/plprql: 1
- snakemake/snakemake-plugin-catalog: 1
- sib-swiss/sendcrypt: 1
- ajv-validator/ajv-cli: 1
- fkhadra/react-toastify: 1
- rustwasm/wasm-pack: 1
- conda-forge/r-miceadds-feedstock: 1
- saulpw/visidata: 1
- neherlab/ffpopsim: 1
- snakemake/snakemake-lang-vscode-plugin: 1
- COMBINE-lab/oarfish: 1
- MisterTea/EternalTerminal: 1
- python/codespeed: 1
- nf-core/viralrecon: 1
- github/docs: 1
- CloudCannon/pagefind: 1
- facebook/zstd: 1
- mooman219/generational_arena_bench: 1
- itchyny/gojq: 1
- chmln/sd: 1
- axios/axios: 1
- openai/codex: 1
- microsoft/vscode-docs: 1
- import-js/eslint-plugin-import: 1
- conda-forge/protobuf-feedstock: 1
- elipapa/markdown-cv: 1
- nextstrain/fauna: 1
- nextstrain/seasonal-flu: 1
- nschloe/stackoverflow-trends: 1
- shaunsingh/sfmono-nerd-font-ligaturized: 1
- rendercv/rendercv: 1
- aswinkarthik/csvdiff: 1
- rust-lang/rust-clippy: 1
- actions/gh-actions-cache: 1
- ICRAR/ijson: 1
- conda-forge/pydantic-feedstock: 1
- Homebrew/homebrew-core: 1
- dtolnay/noisy-clippy: 1
- common-workflow-language/cwltool: 1
- babelomics/impusars: 1
- conda-forge/miniforge: 1
- oasisprotocol/oasis-sdk: 1
- conda-forge/unzip-feedstock: 1
- conda-forge/yte-feedstock: 1
- donjayamanne/vscode-python-manager: 1
- conda-forge/openmpi-feedstock: 1
- rustwasm/wee_alloc: 1
- amazonlinux/amazon-linux-2023: 1
- withastro/starlight: 1
- tidwall/jj: 1
- HenrikBengtsson/x86-64-level: 1
- conda-forge/python-zlib-ng-feedstock: 1
- AliView/AliView: 1
- clystian/stackedit: 1
- recharts/recharts: 1
- vitejs/vite: 1
- sequence-review/sars-cov-2: 1
- lhotari/action-upterm: 1
- hackmdio/hackmd-io-issues: 1
- conda-forge/cvxopt-feedstock: 1
- corneliusroemer/desh-data: 1
- cov-lineages/pangolin-assignment: 1
- niemasd/ViralMSA: 1
- akfamily/akshare: 1
- tjunier/newick_utils: 1
- chanzuckerberg/miniwdl: 1
- conda-forge/gzip-feedstock: 1
- TheKinrar/instances: 1
- conan-io/conan-center-index: 1
- autogluon/autogluon: 1
- pachi81/GlucoDataHandler: 1
- protocolbuffers/protobuf: 1
- wytamma/gisaidr: 1
- python/peps: 1
- rapidfuzz/strsim-rs: 1
- vuejs/docs: 1
- nextstrain/infra: 1
- tfehlmann/vscode-snakefmt-provider: 1
- conda-forge/by-the-numbers: 1
- prompt-toolkit/ptpython: 1
- tldr-pages/tldr-node-client: 1
- rxhanson/Rectangle: 1
- conda-forge/.github: 1
- geofffranks/spruce: 1
- conda-forge/conda-smithy: 1
- mastodon/mastodon: 1
- robert-koch-institut/SARS-CoV-2-Infektionen_in_Deutschland_Archiv: 1
- plausible/plausible-tracker: 1
- xanderfrangos/twinkle-tray: 1
- EtthelWindels/tb_hiv: 1
- conda-forge/datrie-feedstock: 1
- a-slide/NanoCount: 1
- helm/helm: 1
- fathominfo/delphy-web: 1
- rsv-lineages/lineage-designation-A: 1
- andersen-lab/bjorn: 1
- pierrec/lz4: 1
- DataLinkDC/dinky: 1
- andersen-lab/freyja-sc2: 1
- artic-network/primer-schemes: 1
- parikls/mem_usage_ui: 1
- pixelbyaj/vsc_xsd: 1
- aiiie/cram: 1
- google/yamlfmt: 1
- agiacalone/jargonfile: 1
- lmdu/pyfastx: 1
- pradyunsg/lutra: 1
- cov-lineages/pangolin-data: 1
- apache/arrow-rs: 1
- conda-forge/conda-forge.github.io: 1
- chardet/chardet: 1
- docker/for-mac: 1
- chapmanb/bcbb: 1
- rsv-lineages/lineage-designation-B: 1
- gosuri/uilive: 1
- conda-forge/ptpython-feedstock: 1
- eBay/tsv-utils: 1
- genspectrum/cov-spectrum-server: 1
- theiagen/public_health_bioinformatics: 1
- cdk8s-team/cdk8s: 1
- conda-forge/rstudio-feedstock: 1
- dh-tech/undate-python: 1
- msiemens/tinydb: 1
- vcftools/vcftools: 1
- theosanderson/armadillin: 1
- victorlin/nextstrain-custom-docker: 1
- gosuri/uiprogress: 1
- rust-lang/blog.rust-lang.org: 1
- plausible/analytics: 1
- biod/sambamba: 1
- python-poetry/poetry: 1
- hodcroftlab/covariants: 1
- bazelbuild/bazel: 1
- rnag/serde-this-or-that: 1
- bxlab/bx-python: 1
- casey/just: 1
- theosanderson/mov_streamlit: 1
- hoyospi95/lists: 1
- HandBrake/HandBrake: 1
- tpope/vim-surround: 1
- ndjson/ndjson-spec: 1
- jwngr/sdow: 1
- cmyr/cargo-instruments: 1
- piskvorky/smart_open: 1
- kubernetes/community: 1
- sdegutis/imlib-template-minimal: 1
- zed-industries/zed: 1
Pull requests created
- loculus-project/loculus: 197
- pathoplexus/pathoplexus: 128
- nextstrain/nextclade: 102
- pathoplexus/loculus_deployments: 75
- bioconda/bioconda-recipes: 71
- nextstrain/augur: 68
- nextstrain/mpox: 53
- nextstrain/nextclade_data: 51
- nextstrain/conda-base: 21
- nextstrain/ncov-ingest: 20
- nextstrain/ncov: 19
- neherlab/sars-cov-2_variant-reports: 17
- conda-forge/tsv-utils-feedstock: 15
- conda-forge/ldc-feedstock: 14
- nextstrain/docker-base: 14
- conda-forge/conda-forge-pinning-feedstock: 14
- pathoplexus/ena-submission: 12
- neherlab/ncov-simple: 12
- mamba-org/mamba: 11
- neherlab/nextclade_data_workflows: 11
- keycloak/keycloak: 10
- nextstrain/forecasts-ncov: 10
- genspectrum/lapis-silo-e2e: 9
- nextstrain/ncov-clades-schema: 8
- neherlab/treetime: 8
- codespell-project/codespell: 8
- nextstrain/cli: 7
- bioconda/bioconda-docs: 7
- nextstrain/measles: 7
- mpxv-lineages/lineage-designation: 7
- PRQL/prql: 6
- veg/hyphy: 6
- answerdotai/fasthtml-example: 6
- enasequence/read_docs: 6
- conda-forge/ncbi-datasets-cli-feedstock: 6
- neherlab/ffpopsim: 5
- conda-forge/staged-recipes: 5
- vercel/hyper: 5
- nextstrain/flu_frequencies: 5
- genspectrum/lapis-silo: 5
- COMBINE-lab/oarfish: 5
- Azure/setup-helm: 4
- biopython/biopython: 4
- tng/please-cli: 4
- andersen-lab/bjorn: 4
- python/cpython: 4
- AnswerDotAI/fasthtml: 4
- tailscale/tailscale: 4
- conda-forge/gzip-feedstock: 4
- corneliusroemer/nextclade: 4
- nextstrain/rsv: 4
- nextstrain/pathogen-repo-guide: 4
- qiskit-community/qiskit-textbook: 4
- exelban/stats: 4
- snakemake/snakemake: 4
- genspectrum/lapis: 4
- domoritz/arrow-tools: 3
- cov-lineages/lineages-website: 3
- nextstrain/.github: 3
- kubernetes/website: 3
- corneliusroemer/pango_aliasor: 3
- argoproj/argo-cd: 3
- snakemake/snakemake-lang-vscode-plugin: 3
- github/docs: 3
- google/yamlfmt: 3
- helm/helm-www: 3
- tldr-pages/tldr: 3
- ncbi/datasets: 3
- iqtree/iqtree2: 3
- astral-sh/ruff: 3
- epi2me-labs/wf-artic: 3
- nextstrain/auspice: 3
- python/devguide: 3
- ynqa/jnv: 2
- ashvardanian/less_slow.cpp: 2
- bede/deacon: 2
- broadinstitute/pyro-cov: 2
- cbg-ethz/v-pipe: 2
- COMBINE-lab/lr_quant_benchmarks: 2
- conda/conda-build: 2
- conda-forge/conda-forge.github.io: 2
- conda-forge/conda-smithy: 2
- conda-forge/ijson-feedstock: 2
- conda-forge/xopen-feedstock: 2
- dagger/agents: 2
- ecyrbe/zodios: 2
- evildmp/diataxis-documentation-framework: 2
- genspectrum/cov-spectrum-website: 2
- hroptatyr/sample: 2
- iqtree/cmaple: 2
- keycloakify/docs.keycloakify.dev: 2
- keycloakify/keycloakify-starter: 2
- lottie/lottie.github.io: 2
- macisamuele/language-formatters-pre-commit-hooks: 2
- macports/macports-guide: 2
- marocchino/validate-dependabot: 2
- microsoft/playwright: 2
- neherlab/rsv_nextclade_trial: 2
- nextstrain/avian-flu: 2
- nextstrain/seasonal-flu: 2
- pandas-dev/pandas: 2
- pathoplexus/silo-lineage-hierarchy-definitions: 2
- PierreBarrat/TreeKnit.jl: 2
- Polymarket/poly-market-maker: 2
- pypa/pipx: 2
- python/peps: 2
- raviqqe/muffet: 2
- rhysd/actionlint: 2
- rivm-syso/dutch-nic-emc-rivm: 2
- rossjrw/pr-preview-action: 2
- rust-lang/portable-simd: 2
- rustwasm/wasm-pack: 2
- shuzhao-li-lab/khipu: 2
- simonw/ospeak: 2
- sstadick/hck: 2
- stamatak/standard-RAxML: 2
- traefik/traefik: 2
- tstack/lnav: 2
- withastro/astro: 2
- withastro/starlight: 2
- aineniamh/snipit: 2
- corneliusroemer/pango-sequences: 1
- aormsby/Fork-Sync-With-Upstream-action: 1
- nextstrain/zika-tutorial: 1
- softprops/envy: 1
- pathoplexus/curation_reports: 1
- corneliusroemer/nwk-formatter: 1
- pathoplexus/example_data: 1
- corneliusroemer/LAPIS: 1
- corneliusroemer/cpython: 1
- WyriHaximus/github-action-helm3: 1
- withastro/docs: 1
- pierrec/lz4: 1
- AnswerDotAI/nbdev: 1
- pre-commit/sync-pre-commit-deps: 1
- primesearch/Mlucas: 1
- conda-forge/cvxopt-feedstock: 1
- tcr/macos-profiler: 1
- pytest-dev/pytest: 1
- chmln/sd: 1
- chanzuckerberg/miniwdl: 1
- theosanderson/taxonium: 1
- biod/sambamba: 1
- animalize/pyzstd: 1
- all-contributors/allcontributors.org: 1
- tpope/vim-surround: 1
- xiaoyu518/genofunc: 1
- rust-bio/rust-bio: 1
- wolfv/conda-forge-pinning-feedstock: 1
- rust-lang/rust-clippy: 1
- TurakhiaLab/panman: 1
- ryanfox/sphinx-markdown-tables: 1
- SalesforceAIResearch/gift-eval: 1
- saulpw/visidata: 1
- shenwei356/csvtk: 1
- shenwei356/seqkit: 1
- alexpetros/unplannedobsolescence.com: 1
- silask/silask.github.io: 1
- simonw/llm: 1
- alexpetros/unplanned-obsolescence: 1
- msiemens/tinydb: 1
- MightyMoud/sidekick: 1
- microsoft/BosqueLanguage: 1
- micb25/rki_monkeypox: 1
- bazelbuild/bazel: 1
- mbhall88/compression_benchmark: 1
- nextstrain/conda: 1
- martinblech/xmltodict: 1
- MarginaliaSearch/submit-site-to-marginalia-search: 1
- nextstrain/docs.nextstrain.org: 1
- lmdu/pyfastx: 1
- kohler/gifsicle: 1
- jethrokuan/fzf: 1
- jbloomlab/SARS2-mut-fitness: 1
- iqtree/iqtree.github.io: 1
- genspectrum/mpox-spectrum-website: 1
- flamegraph-rs/flamegraph: 1
- fastai/nbdev: 1
- nextstrain/ncov-simple: 1
- enasequence/webin-cli: 1
- corneliusroemer/snakemake: 1
- corneliusroemer/peps: 1
- nextstrain/pathogen-repo-template: 1
Maintainer
- nextstrain/nextclade: 236
- nextstrain/augur: 149
- bioconda/bioconda-recipes: 92
- nextstrain/mpox: 63
- nextstrain/nextclade_data: 55
- nextstrain/auspice: 39
- neherlab/nextclade_data_workflows: 38
- nextstrain/cli: 37
- nextstrain/conda-base: 35
- neherlab/ncov-simple: 34
- genspectrum/cov-spectrum-website: 27
- nextstrain/ncov-ingest: 24
- nextstrain/docker-base: 21
- conda-forge/ldc-feedstock: 21
- nextstrain/ncov: 21
Active Maintainer
Issue Author Associations
- Contributor (531, 32.76%)
- None (524, 32.33%)
- Member (514, 31.71%)
- Collaborator (35, 2.16%)
- Owner (17, 1.05%)
Pull Request Author Associations
- Member (608, 45.54%)
- Contributor (585, 43.82%)
- None (123, 9.21%)
- Owner (13, 0.97%)
- Collaborator (6, 0.45%)
Top Issue Labels
- bug (290)
- enhancement (198)
- website (68)
- feature (64)
- t:feat (64)
- t:bug (58)
- package: nextclade_web (58)
- documentation (43)
- backend (37)
- help wanted (31)
- tests (28)
- question (27)
- ingest (22)
- codesmell (20)
- good first issue (20)
Top Pull Request Labels
- preview (120)
- please review & merge (27)
- review please (16)
- osx-arm64 (12)
- website (9)
- non-main-target (8)
- bug (8)
- release::ci_docs (8)
- size/XS (6)
- feature (5)
- format_me (5)
- documentation (5)
- new version (5)
- aarch64 (4)
- dictionary (4)