Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / tanghaibao/goatools issues and pull requests
#202 - Goatools not accepting Human Phenotype Ontology (HPO) obo file and annotation.
Issue -
State: closed - Opened by ecgenomics over 3 years ago
- 8 comments
#201 - gaf2.2 format support
Issue -
State: closed - Opened by klausqian over 3 years ago
- 2 comments
#200 - Support for Ensembl IDs
Issue -
State: closed - Opened by detrout over 3 years ago
- 2 comments
#199 - Add license scan report and status
Pull Request -
State: closed - Opened by fossabot over 3 years ago
#198 - connection refused in download_ncbi_associations
Issue -
State: closed - Opened by ernestmordret over 3 years ago
- 1 comment
#194 - Ancestors considering specific relations
Issue -
State: closed - Opened by rashmie almost 4 years ago
- 8 comments
#189 - Test with Python 3.9
Pull Request -
State: closed - Opened by tanghaibao almost 4 years ago
- 3 comments
#183 - Wangs semantic similarity method
Issue -
State: closed - Opened by ThHarbig about 4 years ago
- 22 comments
#176 - Where to find background_genes_ncbi notebook?
Issue -
State: closed - Opened by mcsimenc about 4 years ago
- 1 comment
#169 - uncorrected p-value methods give different results
Issue -
State: closed - Opened by emilyyaklich over 4 years ago
- 1 comment
#168 - conda install goatools fails on win64 with nvidia gpu
Issue -
State: closed - Opened by simonwm over 4 years ago
- 1 comment
Labels: help wanted
#166 - p-value calculation discrepancy
Issue -
State: closed - Opened by jvivian-atreca over 4 years ago
- 1 comment
#164 - Cannot read supplemental table 4
Issue -
State: closed - Opened by IrinnaP over 4 years ago
- 1 comment
#162 - Comparison of GO Terms between list
Issue -
State: closed - Opened by BioinformaNicks over 4 years ago
- 7 comments
Labels: TODO
#161 - import from genes_NCBI_10090_ProteinCoding results in unresolved reference
Issue -
State: closed - Opened by rewatitappu over 4 years ago
- 3 comments
#160 - mismatch between go.values and get_all_children
Issue -
State: closed - Opened by mdanb over 4 years ago
- 1 comment
#159 - Use a logging module for global-controlled logging level
Issue -
State: closed - Opened by dvklopfenstein over 4 years ago
- 1 comment
Labels: enhancement
#152 - map_to_slim.py error
Issue -
State: closed - Opened by yuanning-li over 4 years ago
- 3 comments
#149 - SystemExit (from goatools.anno.init.reader_gaf)
Issue -
State: closed - Opened by cross12tamu over 4 years ago
- 2 comments
#148 - Calculating Lin's Similarity if a gene in the pair is not annotated
Issue -
State: closed - Opened by serbulent over 4 years ago
- 7 comments
Labels: High Priority
#147 - NCBI annotations: Use get_ns2assc() to combined species annotations
Issue -
State: closed - Opened by tanghaibao almost 5 years ago
- 4 comments
Labels: High Priority
#137 - Great idea - clunky API and uninformative usage examples
Issue -
State: open - Opened by ialbert about 5 years ago
- 12 comments
Labels: backlog
#135 - keyerror when running run.sh
Issue -
State: closed - Opened by HaoruiZhang about 5 years ago
- 1 comment
#133 - Enhancement: Add kws for quiet printing throughout the library
Issue -
State: closed - Opened by AoifeHughes about 5 years ago
- 6 comments
#130 - Error: Only few genes/proteins in the study are found in the background population.
Issue -
State: open - Opened by arumds over 5 years ago
- 6 comments
#113 - Plot all the significant GOterms from custom association file
Issue -
State: open - Opened by rafarios50 almost 6 years ago
- 1 comment
#106 - Different enrichment results between after issue #96 fix
Issue -
State: closed - Opened by hag007 over 6 years ago
- 6 comments
#102 - is it possible to plot a list of GO terms?
Issue -
State: closed - Opened by ghost over 6 years ago
- 10 comments
#100 - error when running python scripts/plot_go_term.py --term=GO:####### --gml
Issue -
State: closed - Opened by r1-12king over 6 years ago
- 2 comments
#97 - About the latest version (running error)
Issue -
State: closed - Opened by GuilleChapin over 6 years ago
- 5 comments
#94 - Add "force_dnld" parameter and other improvements to download functions in base.py/associations.py
Issue -
State: closed - Opened by Melnorme1984 over 6 years ago
- 2 comments
Labels: help wanted, enhancement
#87 - conda does not install properly when using python 3.4
Issue -
State: closed - Opened by JudoWill about 7 years ago
- 3 comments
Labels: help wanted
#71 - Consider support for obographs json format
Issue -
State: open - Opened by cmungall almost 8 years ago
- 6 comments
Labels: TODO
#46 - Comparison studies and fisher.pvalue_population
Issue -
State: closed - Opened by yunesj almost 9 years ago
- 1 comment
#45 - Loci with no GO annotation
Issue -
State: closed - Opened by AGrusz almost 9 years ago
- 1 comment