Ecosyste.ms: Issues

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GitHub / sydney-informatics-hub/fastq-to-bam issues and pull requests

#27 - Minimum Information about Whole-genome Sequencing

Issue - State: open - Opened by DarioS 2 months ago

#26 - not able to run the project

Issue - State: closed - Opened by Shrutiagarwal1805 about 1 year ago - 1 comment

#25 - bqsr_recal.sh has Empty ref Variable

Issue - State: closed - Opened by DarioS about 1 year ago - 1 comment

#24 - SAMTOOLS_NCPUS is Unused

Issue - State: open - Opened by DarioS about 1 year ago - 1 comment

#23 - bwa-postalt.js Fail to open the file

Issue - State: closed - Opened by nandan75 about 1 year ago

#22 - Reference Bundle is Stored on Deprecated CloudStor Service

Issue - State: open - Opened by DarioS over 1 year ago - 1 comment

#21 - Reliance on Relative Paths

Issue - State: open - Opened by DarioS over 1 year ago

#20 - Where to download nci-parallel/1.0.0?

Issue - State: closed - Opened by tkcaccia almost 2 years ago - 1 comment

#19 - Fixed issue 18

Pull Request - State: closed - Opened by calizilla over 2 years ago

#18 - BQSR Recalibration Make Input Only Processes Normal Sample Files

Issue - State: closed - Opened by DarioS over 2 years ago - 1 comment

#17 - samblaster Path Hard-Coded to Inaccessible Path

Issue - State: closed - Opened by DarioS over 2 years ago - 1 comment

#16 - nci-parallel call needs updating

Issue - State: open - Opened by calizilla over 2 years ago

#15 - Alternate Contig Alignments and Mapping Quality Zero

Issue - State: open - Opened by DarioS almost 3 years ago - 12 comments

#14 - Question on categories for cohort.config file

Issue - State: closed - Opened by Ysuita about 3 years ago - 1 comment

#13 - Dict Value Assignment Missing

Issue - State: closed - Opened by DarioS about 3 years ago - 1 comment

#12 - align_make_input.sh lib_diff is Initialised Empty and Never Set Otherwise

Issue - State: closed - Opened by DarioS about 3 years ago - 1 comment

#11 - No fastqc Module on Gadi

Issue - State: closed - Opened by DarioS over 3 years ago - 1 comment

#10 - reformat_split_disc Removed From Pipeline

Issue - State: closed - Opened by DarioS over 3 years ago - 1 comment

#9 - GATK ApplyBQSR Fails if Folder Coincidentally Named unmapped

Issue - State: closed - Opened by DarioS over 3 years ago - 1 comment

#7 - Broken Path to Fixed NCI Parallel

Issue - State: closed - Opened by DarioS over 3 years ago - 1 comment

#6 - Split FASTQ Make Input Loses Input Files

Issue - State: closed - Opened by DarioS over 3 years ago - 1 comment

#5 - Update openmpi

Pull Request - State: closed - Opened by tracychew over 3 years ago

#4 - Update README.md

Pull Request - State: closed - Opened by georgiesamaha over 3 years ago

#3 - Create_v2_userguide

Pull Request - State: closed - Opened by georgiesamaha over 3 years ago

#2 - Hard-Coded Dependencies on er01 Scratch

Issue - State: closed - Opened by DarioS almost 4 years ago - 2 comments

#1 - BWA Results Vary Based on Thread Number

Issue - State: open - Opened by DarioS almost 4 years ago - 2 comments