southern-cross-plant-science/cdno issues and pull requests

#116 - Lignin should be a subclass of insoluble fibre?

Issue - State: open - Opened by ddooley 11 months ago - 1 comment

#115 - Create CDNO annotation documentation

Issue - State: open - Opened by kaiiam over 1 year ago - 2 comments

#114 - Add term deprication/obsolete template

Issue - State: open - Opened by kaiiam over 1 year ago - 2 comments

#113 - Update CDNO/tooling to lastest owl API

Issue - State: open - Opened by kaiiam over 1 year ago - 6 comments

#112 - Added code numbers from USDA, fixed duplication of labels issue-109, add ~350 sec met

Pull Request - State: closed - Opened by LilyAndres almost 2 years ago

#111 - Add changes related to the rdfs:label@en to AT rdfs:label^^xml:string

Pull Request - State: closed - Opened by LilyAndres almost 2 years ago

#110 - Add changes related to issue-108 and 109

Pull Request - State: closed - Opened by LilyAndres almost 2 years ago

#109 - Multiple labels for ChEBI chemicals

Issue - State: open - Opened by ddooley almost 2 years ago - 11 comments

#108 - xrefs are malformed - CURIEs should not have space after the colon

Issue - State: closed - Opened by cmungall almost 2 years ago - 1 comment

#107 - Add changes in the labels and definitions of the deprecated terms

Pull Request - State: closed - Opened by LilyAndres about 2 years ago

#106 - Add ~350 secondary metabolites and deprecated in the edit file issue 101

Pull Request - State: closed - Opened by LilyAndres about 2 years ago

#105 - Add ~350 secondary metabolites terms

Pull Request - State: closed - Opened by LilyAndres about 2 years ago

#104 - Add OWL file in rdf/xml format

Pull Request - State: closed - Opened by LilyAndres about 2 years ago

#103 - Terms deprecated

Pull Request - State: closed - Opened by LilyAndres about 2 years ago - 2 comments

#102 - Add changes for removing equivalency statements #101

Pull Request - State: closed - Opened by LilyAndres about 2 years ago - 1 comment

#101 - duplicate terms under different ids now under 'concentration of'

Issue - State: closed - Opened by ddooley about 2 years ago - 18 comments
Labels: Potentially reoccuring issue

#100 - Changes in issue-97 Makefile desing pattern

Pull Request - State: closed - Opened by LilyAndres about 2 years ago

#99 - fix dosdp tools issue

Pull Request - State: closed - Opened by matentzn about 2 years ago

#98 - version IRI in OLS does not resolve

Issue - State: open - Opened by marieALaporte about 2 years ago - 14 comments

#97 - Error in the design pattern during the release

Issue - State: closed - Opened by LilyAndres over 2 years ago - 12 comments

#96 - Protein clasification

Issue - State: open - Opened by LilyAndres over 2 years ago

#95 - Changes in the definition of dietary role

Issue - State: open - Opened by LilyAndres over 2 years ago

#94 - Condensed tannins

Issue - State: open - Opened by LilyAndres over 2 years ago

#93 - Add carbohydrates and label and definition for dietary chemical components and dietary role

Pull Request - State: closed - Opened by LilyAndres over 2 years ago - 1 comment

#92 - CHEBI annotations are not being imported into CDNO

Issue - State: closed - Opened by LilyAndres over 2 years ago - 2 comments

#91 - Add all the changes for the carbohydrates

Pull Request - State: closed - Opened by LilyAndres over 2 years ago

#90 - New terms for lipid class

Issue - State: open - Opened by LilyAndres over 2 years ago

#89 - New terms in Protein class

Issue - State: open - Opened by LilyAndres over 2 years ago

#88 - New term in the Carbohydrate class

Issue - State: closed - Opened by LilyAndres over 2 years ago - 3 comments

#87 - Ontology reuse vs CDNO nutritional functional attribute terms

Issue - State: open - Opened by laurenechan over 2 years ago

#86 - Remove the word "function" from the definition of 'human dietary role'

Issue - State: closed - Opened by LilyAndres over 2 years ago - 2 comments

#85 - Map tagnames from EuroFIR into CDNO

Issue - State: open - Opened by LilyAndres over 2 years ago

#84 - Change definition of the dietary minerals

Issue - State: closed - Opened by LilyAndres over 2 years ago - 1 comment

#83 - Add 238 mineral nutrient terms and 10 proteins

Pull Request - State: closed - Opened by LilyAndres over 2 years ago

#82 - Data item to associate with a concentration

Issue - State: open - Opened by ddooley over 2 years ago - 6 comments

#81 - Add compile instructions for new changes in #47

Pull Request - State: open - Opened by kaiiam over 2 years ago

#80 - Add three new classes mentioned in issue #65, #66 and #67

Pull Request - State: closed - Opened by LilyAndres over 2 years ago - 2 comments

#79 - Release 3.0

Issue - State: closed - Opened by LilyAndres over 2 years ago - 1 comment

#78 - Add new changes for new release, vitamins, DNC class subclass of material entity

Pull Request - State: closed - Opened by LilyAndres almost 3 years ago

#77 - Add new CHEBI terms in chebi_terms.txt file, basically vitamins #57 and others in #56

Pull Request - State: closed - Opened by LilyAndres almost 3 years ago - 4 comments

#76 - Add changes discussed in issue-57 and issue-64 for new release

Pull Request - State: closed - Opened by LilyAndres about 3 years ago - 1 comment

#75 - Add changes in Robot templates, keeping original CHEBI labels and move other labels as synonyms

Pull Request - State: closed - Opened by LilyAndres about 3 years ago - 1 comment

#74 - Add change mentioned in Issue 64 Exact synonyms

Pull Request - State: closed - Opened by LilyAndres about 3 years ago - 1 comment

#73 - Issue 54

Pull Request - State: closed - Opened by LilyAndres about 3 years ago - 3 comments

#72 - Check the CHEBI associations to trace elements

Issue - State: closed - Opened by LilyAndres about 3 years ago - 1 comment

#71 - Add terms that have been described in GEONutrition MAPS

Issue - State: open - Opened by LilyAndres about 3 years ago

#70 - Definition of labels and reuse of CHEBI terms in the CDNO mineral nutrient class

Issue - State: closed - Opened by LilyAndres about 3 years ago - 15 comments

#69 - CDNO hierarchy doesn't have dietary nutritional component under material entity?

Issue - State: closed - Opened by ddooley over 3 years ago - 13 comments

#68 - Change CDNO title

Pull Request - State: closed - Opened by matentzn over 3 years ago - 1 comment

#67 - CDNO physical attribute class

Issue - State: closed - Opened by LilyAndres over 3 years ago - 12 comments

#66 - CDNO nutritional functional attribute class

Issue - State: closed - Opened by LilyAndres over 3 years ago - 3 comments

#65 - CDNO dietary role class

Issue - State: closed - Opened by LilyAndres over 3 years ago - 11 comments

#64 - There are a number of CHEBI terms that are getting duplicate labels

Issue - State: closed - Opened by ddooley over 3 years ago - 34 comments

#63 - Add changes plant structure for material entity - release v2.0

Pull Request - State: closed - Opened by LilyAndres over 3 years ago - 1 comment

#62 - test

Issue - State: closed - Opened by LilyAndres over 3 years ago

#61 - Suggestion for classification of the compositional constituants

Issue - State: open - Opened by maweber-bia over 3 years ago - 13 comments

#60 - capsaicin

Issue - State: open - Opened by maweber-bia over 3 years ago - 9 comments

#59 - Material ent

Pull Request - State: closed - Opened by kaiiam over 3 years ago

#58 - Issue 53

Pull Request - State: closed - Opened by LilyAndres over 3 years ago - 3 comments

#57 - Definition of vitamins and vitamers in CHEBI and CDNO

Issue - State: closed - Opened by LilyAndres over 3 years ago - 51 comments

#56 - NTR: concentration of methylmercury compound in material entity

Issue - State: closed - Opened by ddooley over 3 years ago - 2 comments

#55 - Create new release

Issue - State: closed - Opened by kaiiam over 3 years ago - 3 comments

#54 - Mapping mismatch.

Issue - State: closed - Opened by kaiiam over 3 years ago - 2 comments

#53 - Remove material entity direct subclasses

Issue - State: closed - Opened by kaiiam over 3 years ago - 5 comments

#52 - Issue 51

Pull Request - State: closed - Opened by LilyAndres over 3 years ago - 1 comment

#51 - Measures of concentrations of chemicals in animals

Issue - State: closed - Opened by ddooley over 3 years ago - 25 comments

#50 - Some confusion in FoodOn regarding CHEBI vitamins

Issue - State: closed - Opened by ddooley over 3 years ago - 4 comments

#49 - concentration of 5-formyltetrahydrofolic acid in plant structure

Issue - State: closed - Opened by ddooley over 3 years ago - 7 comments

#48 - I need some excel files related to the development of the CDNO for my thesis

Issue - State: closed - Opened by LilyAndres over 3 years ago - 2 comments

#47 - Reason cdno.owl

Issue - State: open - Opened by kaiiam over 3 years ago - 2 comments

#46 - Create github first release

Issue - State: closed - Opened by kaiiam over 3 years ago - 1 comment

#45 - Issue 43

Pull Request - State: closed - Opened by kaiiam over 3 years ago

#44 - Approval of CDNO in OBO foundry

Issue - State: closed - Opened by LilyAndres over 3 years ago - 3 comments

#43 - Run prepare release

Issue - State: closed - Opened by kaiiam over 3 years ago - 2 comments

#42 - Issue 41

Pull Request - State: closed - Opened by kaiiam over 3 years ago - 3 comments

#41 - Import IAO to get defintion label

Issue - State: closed - Opened by kaiiam over 3 years ago

#40 - Run sudo ./run.sh make all_modules

Pull Request - State: closed - Opened by kaiiam over 3 years ago

#39 - Run the chemical_concentrations

Issue - State: closed - Opened by kaiiam over 3 years ago - 3 comments

#38 - Lili edits owl

Pull Request - State: closed - Opened by LilyAndres over 3 years ago - 1 comment

#37 - Add definition for mineral nutrient

Pull Request - State: closed - Opened by LilyAndres over 3 years ago - 1 comment

#36 - Fix grammer in defintion in chem conc yaml address #35

Pull Request - State: closed - Opened by kaiiam over 3 years ago - 1 comment

#35 - Fix grammer in definitions of concentration terms

Issue - State: closed - Opened by kaiiam over 3 years ago - 1 comment

#34 - Issue 33

Pull Request - State: closed - Opened by LilyAndres over 3 years ago - 1 comment

#33 - Issue 32

Pull Request - State: closed - Opened by LilyAndres over 3 years ago - 4 comments

#32 - INFOOD & USDA Mapping annotation property

Issue - State: closed - Opened by kaiiam over 3 years ago - 4 comments

#31 - Lili edits jan2021

Pull Request - State: closed - Opened by LilyAndres over 3 years ago - 5 comments

#30 - NTR: dietary nutritional component

Issue - State: open - Opened by LilyAndres over 3 years ago - 43 comments

#29 - NTR: plant secondary metabolite

Issue - State: closed - Opened by LilyAndres over 3 years ago - 9 comments
Labels: top_level_nutrition_ontology

GitHub / southern-cross-plant-science/cdno issues and pull requests