sorgerlab/famplex issues and pull requests

#195 - Pico PTEFb complex and Selectins

Pull Request - State: closed - Opened by AlexanderPico over 1 year ago - 1 comment

#194 - Pico hgnc updates

Pull Request - State: closed - Opened by AlexanderPico over 1 year ago - 5 comments

#193 - updated approved HGNC symbols

Pull Request - State: closed - Opened by AlexanderPico over 1 year ago - 1 comment

#192 - Curate protein families from SIGNOR

Pull Request - State: closed - Opened by bgyori over 1 year ago

#191 - Add DUB descriptions

Pull Request - State: closed - Opened by bgyori almost 3 years ago

#190 - Add description texts for all DUB families

Issue - State: closed - Opened by cthoyt about 3 years ago - 1 comment

#189 - Add one more equivalence

Pull Request - State: closed - Opened by bgyori about 3 years ago

#188 - Add TIM22 and CAK complexes

Pull Request - State: closed - Opened by steppi about 3 years ago - 1 comment

#187 - Extensions related to pain biology

Pull Request - State: closed - Opened by bgyori about 3 years ago

#186 - Update an outdated gene name

Pull Request - State: closed - Opened by bgyori about 3 years ago - 1 comment

#185 - Add SFAM and SCOMP identifiers

Pull Request - State: closed - Opened by cthoyt over 3 years ago

#184 - Update BEL namespace to SCOMP and SFAM

Issue - State: closed - Opened by cthoyt over 3 years ago - 3 comments

#183 - Add linting script

Pull Request - State: open - Opened by cthoyt over 3 years ago

#182 - Add desumoylases

Pull Request - State: closed - Opened by cthoyt over 3 years ago - 3 comments

#181 - Fix empty descriptions on auto-generated site

Pull Request - State: closed - Opened by cthoyt over 3 years ago

#180 - None fields/links on website

Issue - State: closed - Opened by bgyori over 3 years ago

#179 - Change ECCODE pattern

Pull Request - State: closed - Opened by bgyori over 3 years ago

#178 - Add Deubiquitinating Enzyme (DUBs)

Pull Request - State: closed - Opened by cthoyt over 3 years ago

#177 - Export diff checking in tests are not working as intended

Issue - State: open - Opened by bgyori over 3 years ago

#176 - Signor complexes

Pull Request - State: closed - Opened by steppi over 3 years ago

#175 - Add cGK as synonym for PRKG

Issue - State: open - Opened by bgyori over 3 years ago

#174 - Add LIMK

Issue - State: open - Opened by bgyori over 3 years ago

#173 - Add parent HSP entry

Issue - State: open - Opened by bgyori over 3 years ago

#172 - Gene grounding curation

Pull Request - State: closed - Opened by steppi over 3 years ago

#171 - Static site improvements

Issue - State: closed - Opened by cthoyt over 3 years ago

#170 - Add GitHub action to build static site

Pull Request - State: closed - Opened by cthoyt over 3 years ago - 3 comments

#169 - Import definitions via xrefs

Pull Request - State: closed - Opened by cthoyt over 3 years ago - 5 comments

#168 - Import definitions for external sources when xrefs available

Issue - State: closed - Opened by cthoyt over 3 years ago

#167 - Automate update of static site with GHA

Issue - State: closed - Opened by cthoyt over 3 years ago

#166 - Add function for getting entity type

Issue - State: open - Opened by cthoyt over 3 years ago

#165 - Add static site generator

Pull Request - State: closed - Opened by cthoyt over 3 years ago - 10 comments

#164 - Add static site generator

Issue - State: closed - Opened by cthoyt over 3 years ago - 2 comments

#163 - Identifiers.org links to BioPortal are broken

Issue - State: closed - Opened by bgyori almost 4 years ago - 3 comments

#162 - Add Cyclin B and G

Pull Request - State: closed - Opened by bgyori almost 4 years ago

#161 - Update deprecated gene symbols

Pull Request - State: closed - Opened by bgyori almost 4 years ago

#160 - Migrate testing to GitHub Actions

Pull Request - State: closed - Opened by bgyori almost 4 years ago

#159 - Non-exact equivalences

Issue - State: open - Opened by bgyori almost 4 years ago - 3 comments

#158 - Remove some MeSH equivalences

Pull Request - State: closed - Opened by bgyori almost 4 years ago - 3 comments

#157 - Erm tead

Pull Request - State: closed - Opened by steppi about 4 years ago

#156 - Fix some ID validity issues

Pull Request - State: closed - Opened by bgyori about 4 years ago - 1 comment

#155 - Add preferred namespaces for some grounding map entries

Pull Request - State: closed - Opened by bgyori about 4 years ago

#154 - Covid grounding 3

Pull Request - State: closed - Opened by steppi about 4 years ago - 1 comment

#153 - Load grounding map fix

Pull Request - State: closed - Opened by steppi about 4 years ago

#152 - Signor mappings

Pull Request - State: closed - Opened by steppi about 4 years ago - 1 comment

#151 - Covid grounding 2

Pull Request - State: closed - Opened by steppi about 4 years ago

#150 - Invalid entry name

Issue - State: closed - Opened by bgyori about 4 years ago - 1 comment

#149 - Port MeSH mappings from Gilda

Pull Request - State: closed - Opened by bgyori about 4 years ago

#148 - Covid grounding

Pull Request - State: closed - Opened by steppi about 4 years ago - 1 comment

#147 - Add documentation for the python package

Pull Request - State: closed - Opened by bgyori over 4 years ago

#146 - Fix bug causing error in resource updating script

Pull Request - State: closed - Opened by steppi over 4 years ago

#145 - Mesh equiv

Pull Request - State: closed - Opened by steppi over 4 years ago - 1 comment

#144 - Dyneins

Pull Request - State: closed - Opened by steppi over 4 years ago - 1 comment

#143 - Python package

Pull Request - State: closed - Opened by steppi over 4 years ago - 2 comments

#142 - Add separate resource file for naming

Issue - State: open - Opened by bgyori over 4 years ago

#141 - Add previous PR

Pull Request - State: closed - Opened by ddomingof over 4 years ago - 1 comment

#140 - Add new families

Pull Request - State: closed - Opened by ddomingof over 4 years ago - 7 comments

#139 - Leaf families

Pull Request - State: closed - Opened by steppi over 4 years ago - 2 comments

#138 - Move non-FamPlex mappings out of grounding_map?

Issue - State: open - Opened by bgyori over 4 years ago

#137 - Add TRAFs

Pull Request - State: closed - Opened by bgyori over 4 years ago

#136 - Add PKD family

Issue - State: open - Opened by johnbachman over 4 years ago

#135 - Fix grounding map bug for Troponin_I

Pull Request - State: closed - Opened by johnbachman over 4 years ago

#134 - Add MIRLET7 subfamilies

Pull Request - State: closed - Opened by cthoyt over 4 years ago - 4 comments

#133 - Add cathepsin

Pull Request - State: closed - Opened by bgyori over 4 years ago

#132 - Add NHE

Issue - State: open - Opened by bgyori over 4 years ago

#131 - Add Interferon lambda

Issue - State: open - Opened by bgyori over 4 years ago

#130 - Add details for integrins

Issue - State: open - Opened by bgyori over 4 years ago

#129 - Add GNRH

Pull Request - State: closed - Opened by bgyori over 4 years ago

#128 - Add IL23

Pull Request - State: closed - Opened by bgyori over 4 years ago

#127 - Add IFNAR

Pull Request - State: closed - Opened by bgyori over 4 years ago

#126 - Fixes in equivalences

Pull Request - State: closed - Opened by bgyori over 4 years ago

#125 - Improvements for Reach export and other changes

Pull Request - State: closed - Opened by bgyori over 4 years ago

#124 - Add PI3KC2

Issue - State: open - Opened by bgyori over 4 years ago

#123 - Export files for Reach bioresources

Pull Request - State: closed - Opened by bgyori over 4 years ago

#122 - Add ATP-sensitive potassium channel

Issue - State: open - Opened by cthoyt over 4 years ago

#121 - Add tox to make updating exports easier

Pull Request - State: closed - Opened by cthoyt over 4 years ago

#120 - Add endothelin receptor family

Pull Request - State: closed - Opened by cthoyt over 4 years ago

#119 - Fix bug in `except ImportError:`

Pull Request - State: closed - Opened by cthoyt over 4 years ago

#118 - Add TAB family

Pull Request - State: closed - Opened by cthoyt over 4 years ago - 1 comment

#117 - Add ability to have optional entity descriptions

Pull Request - State: closed - Opened by cthoyt over 4 years ago - 2 comments

#116 - Add FOX proteins

Pull Request - State: closed - Opened by cthoyt over 4 years ago - 2 comments

#115 - Add IL23

Issue - State: closed - Opened by bgyori over 4 years ago

#114 - Add GNRH

Issue - State: closed - Opened by bgyori over 4 years ago

#113 - More adeft groundings

Pull Request - State: closed - Opened by steppi almost 5 years ago

#112 - Add groundings and new families from kinase curation

Pull Request - State: closed - Opened by bgyori almost 5 years ago

#111 - Update BEL NS export and bel-resources requirement

Pull Request - State: closed - Opened by bgyori almost 5 years ago

#110 - Update BEL namespace export with bel-resources 0.0.3

Issue - State: closed - Opened by bgyori almost 5 years ago - 1 comment

#109 - Add Wnt5 as a family

Pull Request - State: closed - Opened by bgyori almost 5 years ago

#108 - FamPlex OBO display on BioPortal

Issue - State: closed - Opened by bgyori almost 5 years ago - 1 comment

#107 - Mediator complex

Pull Request - State: closed - Opened by steppi almost 5 years ago - 1 comment

#106 - Ion channel groundings

Pull Request - State: closed - Opened by steppi almost 5 years ago - 1 comment

#105 - Add neuropeptide receptors

Pull Request - State: closed - Opened by cthoyt almost 5 years ago - 3 comments

#104 - Add bradykinin receptor (BDKR)

Pull Request - State: closed - Opened by cthoyt almost 5 years ago

#103 - Add Ki67 to grounding map

Pull Request - State: closed - Opened by bgyori almost 5 years ago

#102 - Add entries for SGC

Pull Request - State: closed - Opened by cthoyt about 5 years ago

#101 - Add Soluble guanylyl cyclase

Issue - State: closed - Opened by cthoyt about 5 years ago

#100 - Import olfactory receptors

Pull Request - State: closed - Opened by bgyori about 5 years ago

#99 - Myosin

Pull Request - State: closed - Opened by steppi about 5 years ago - 1 comment

#98 - Add kinesins

Pull Request - State: closed - Opened by bgyori about 5 years ago

#89 - Add Myosin family and subfamilies

Issue - State: closed - Opened by johnbachman over 5 years ago - 1 comment

#88 - Make FamPlex into a Python package

Issue - State: closed - Opened by cthoyt over 5 years ago - 1 comment

GitHub / sorgerlab/famplex issues and pull requests