Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / soedinglab/plass issues and pull requests

#48 - Data Access

Issue - State: open - Opened by shengxiaobufu 3 months ago - 1 comment

#48 - Data Access

Issue - State: open - Opened by shengxiaobufu 3 months ago - 1 comment

#47 - Penguin: no assembled contigs

Issue - State: open - Opened by cv-1993 3 months ago

#47 - Penguin: no assembled contigs

Issue - State: open - Opened by cv-1993 3 months ago

#46 - Insights needed for comparison with other assemblers

Issue - State: open - Opened by GeoMicroSoares 7 months ago - 1 comment

#46 - Insights needed for comparison with other assemblers

Issue - State: open - Opened by GeoMicroSoares 7 months ago - 1 comment

#45 - Alternative codon table

Issue - State: closed - Opened by aabaricalla 8 months ago - 2 comments

#45 - Alternative codon table

Issue - State: closed - Opened by aabaricalla 8 months ago - 2 comments

#44 - Quality trimming reads?

Issue - State: open - Opened by timghaly 9 months ago - 2 comments

#44 - Quality trimming reads?

Issue - State: open - Opened by timghaly 9 months ago - 2 comments

#41 - High level of duplicated protein sequences

Issue - State: closed - Opened by hegardon almost 2 years ago - 1 comment

#41 - High level of duplicated protein sequences

Issue - State: closed - Opened by hegardon almost 2 years ago - 1 comment

#40 - Quantification

Issue - State: open - Opened by stheil15 almost 2 years ago

#40 - Quantification

Issue - State: open - Opened by stheil15 almost 2 years ago

#38 - Paired read prediction - mergereads failed

Issue - State: open - Opened by dnolin13 over 2 years ago - 3 comments

#38 - Paired read prediction - mergereads failed

Issue - State: open - Opened by dnolin13 over 2 years ago - 3 comments

#37 - Install issues

Issue - State: open - Opened by slschnorr almost 3 years ago - 6 comments

#37 - Install issues

Issue - State: open - Opened by slschnorr almost 3 years ago - 6 comments

#36 - Update MMseqs2 submodule

Issue - State: closed - Opened by genomewalker over 3 years ago

#36 - Update MMseqs2 submodule

Issue - State: closed - Opened by genomewalker over 3 years ago

#35 - Use PLASS in metatranscriptomic data

Issue - State: open - Opened by jjsanchezgil over 3 years ago - 5 comments

#35 - Use PLASS in metatranscriptomic data

Issue - State: open - Opened by jjsanchezgil over 3 years ago - 5 comments

#34 - Issue with Docker image soedinglab/plass:latest

Issue - State: closed - Opened by winkel111 over 3 years ago - 2 comments

#34 - Issue with Docker image soedinglab/plass:latest

Issue - State: closed - Opened by winkel111 over 3 years ago - 2 comments

#33 - Empty (len:0) sequences in plass output

Issue - State: open - Opened by aleixop almost 4 years ago - 4 comments

#33 - Empty (len:0) sequences in plass output

Issue - State: open - Opened by aleixop almost 4 years ago - 4 comments

#31 - Some Issues about the length of protein sequences

Issue - State: open - Opened by susutBu about 4 years ago - 2 comments

#31 - Some Issues about the length of protein sequences

Issue - State: open - Opened by susutBu about 4 years ago - 2 comments

#30 - Segmentation fault translatenucs

Issue - State: closed - Opened by sarah872 over 4 years ago - 2 comments

#30 - Segmentation fault translatenucs

Issue - State: closed - Opened by sarah872 over 4 years ago - 2 comments

#29 - The output file is empty

Issue - State: open - Opened by Sami-Altayyar over 4 years ago - 1 comment

#29 - The output file is empty

Issue - State: open - Opened by Sami-Altayyar over 4 years ago - 1 comment

#28 - Use Plass for euk metagenomics data

Issue - State: open - Opened by liuxianghui over 4 years ago - 2 comments

#28 - Use Plass for euk metagenomics data

Issue - State: open - Opened by liuxianghui over 4 years ago - 2 comments

#27 - Error running mpi job with class

Issue - State: open - Opened by liuxianghui over 4 years ago - 1 comment

#27 - Error running mpi job with class

Issue - State: open - Opened by liuxianghui over 4 years ago - 1 comment

#26 - missing handling of small number of input reads

Issue - State: open - Opened by mr-eyes over 4 years ago - 7 comments

#26 - missing handling of small number of input reads

Issue - State: open - Opened by mr-eyes over 4 years ago - 7 comments

#25 - map of input sequences to assembled sequence

Issue - State: open - Opened by galicae over 4 years ago
Labels: enhancement

#25 - map of input sequences to assembled sequence

Issue - State: open - Opened by galicae over 4 years ago
Labels: enhancement

#24 - Using already predicted ORFs from reads

Issue - State: open - Opened by genomewalker over 4 years ago - 4 comments

#24 - Using already predicted ORFs from reads

Issue - State: open - Opened by genomewalker over 4 years ago - 4 comments

#23 - MPI local-tmp

Issue - State: open - Opened by genomewalker over 4 years ago - 1 comment

#23 - MPI local-tmp

Issue - State: open - Opened by genomewalker over 4 years ago - 1 comment

#22 - Final output file size 0

Issue - State: open - Opened by taylorreiter over 4 years ago - 2 comments

#22 - Final output file size 0

Issue - State: open - Opened by taylorreiter over 4 years ago - 2 comments

#20 - Update README.md

Pull Request - State: closed - Opened by galicae about 5 years ago - 1 comment

#20 - Update README.md

Pull Request - State: closed - Opened by galicae about 5 years ago - 1 comment

#19 - Recurrently getting "Kmer matching step died"

Issue - State: open - Opened by apcamargo about 5 years ago - 7 comments

#19 - Recurrently getting "Kmer matching step died"

Issue - State: open - Opened by apcamargo about 5 years ago - 7 comments

#18 - Core dump during assembly

Issue - State: open - Opened by apcamargo about 5 years ago - 2 comments

#18 - Core dump during assembly

Issue - State: open - Opened by apcamargo about 5 years ago - 2 comments

#17 - Using more stringent parameters to avoid spurious sequences

Issue - State: open - Opened by apcamargo about 5 years ago - 9 comments

#17 - Using more stringent parameters to avoid spurious sequences

Issue - State: open - Opened by apcamargo about 5 years ago - 9 comments

#16 - Can not allocate index memory in DBReader

Issue - State: closed - Opened by kihyunee over 5 years ago - 6 comments

#16 - Can not allocate index memory in DBReader

Issue - State: closed - Opened by kihyunee over 5 years ago - 6 comments

#15 - Compilation error: zlib found but not working

Issue - State: open - Opened by FranckLejzerowicz over 5 years ago - 4 comments

#15 - Compilation error: zlib found but not working

Issue - State: open - Opened by FranckLejzerowicz over 5 years ago - 4 comments

#14 - Assembling big data

Issue - State: open - Opened by lzaramela over 5 years ago - 5 comments

#14 - Assembling big data

Issue - State: open - Opened by lzaramela over 5 years ago - 5 comments

#13 - Protein sequence abundance

Issue - State: open - Opened by cmorganl over 5 years ago - 5 comments
Labels: enhancement

#13 - Protein sequence abundance

Issue - State: open - Opened by cmorganl over 5 years ago - 5 comments
Labels: enhancement

#12 - Intuitions regarding possible output and previous steps

Issue - State: open - Opened by adriaaula over 5 years ago - 1 comment

#12 - Intuitions regarding possible output and previous steps

Issue - State: open - Opened by adriaaula over 5 years ago - 1 comment

#11 - Incorrect headers for Nuc -> Protein

Issue - State: open - Opened by ghost over 5 years ago - 7 comments

#11 - Incorrect headers for Nuc -> Protein

Issue - State: open - Opened by ghost over 5 years ago - 7 comments

#10 - Defining minimum ORF length doesn't work

Issue - State: closed - Opened by genomewalker over 5 years ago - 1 comment

#10 - Defining minimum ORF length doesn't work

Issue - State: closed - Opened by genomewalker over 5 years ago - 1 comment

#9 - Running plass in parallel on same 'tmp' folder

Issue - State: closed - Opened by mhibberd over 5 years ago - 2 comments

#9 - Running plass in parallel on same 'tmp' folder

Issue - State: closed - Opened by mhibberd over 5 years ago - 2 comments

#8 - Combining single and paired reads

Issue - State: closed - Opened by mooreryan over 5 years ago - 2 comments

#8 - Combining single and paired reads

Issue - State: closed - Opened by mooreryan over 5 years ago - 2 comments

#7 - Automated Docker images with sha256 tags

Issue - State: closed - Opened by sminot almost 6 years ago - 4 comments

#6 - Output FASTA header format?

Issue - State: closed - Opened by sjaenick almost 6 years ago - 2 comments

#5 - Reduce TMP disk usage

Issue - State: closed - Opened by genomewalker almost 6 years ago - 5 comments

#4 - mem or disk issue?

Issue - State: closed - Opened by colindaven almost 6 years ago - 4 comments

#3 - Compilation error - cannot find AminoAcidLookupTables.h

Issue - State: closed - Opened by ctb about 6 years ago - 2 comments

#2 - Option to change genetic code (translation table)?

Issue - State: closed - Opened by sminot about 6 years ago - 8 comments

#1 - ID collisions in FASTA output

Issue - State: closed - Opened by maitai over 6 years ago - 6 comments