Ecosyste.ms: Issues

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GitHub / schultzm/havic issues and pull requests

#21 - ruffus not a dep in setup.py ?

Issue - State: open - Opened by tseemann about 4 years ago

#21 - ruffus not a dep in setup.py ?

Issue - State: open - Opened by tseemann about 4 years ago

#20 - install.sh instructions

Issue - State: open - Opened by tseemann over 4 years ago

#20 - install.sh instructions

Issue - State: open - Opened by tseemann over 4 years ago

#19 - Needs to be installable via conda directly

Issue - State: open - Opened by andersgs over 4 years ago

#19 - Needs to be installable via conda directly

Issue - State: open - Opened by andersgs over 4 years ago

#18 - Should include some guidelines for contributors

Issue - State: open - Opened by andersgs over 4 years ago

#17 - Should include a Code of Conduct

Issue - State: open - Opened by andersgs over 4 years ago

#17 - Should include a Code of Conduct

Issue - State: open - Opened by andersgs over 4 years ago

#16 - Should include a change log

Issue - State: closed - Opened by andersgs over 4 years ago - 1 comment

#16 - Should include a change log

Issue - State: closed - Opened by andersgs over 4 years ago - 1 comment

#15 - Rename havic to something more generic

Issue - State: closed - Opened by schultzm over 4 years ago

#15 - Rename havic to something more generic

Issue - State: closed - Opened by schultzm over 4 years ago

#14 - r dep check

Issue - State: closed - Opened by schultzm over 4 years ago - 1 comment

#14 - r dep check

Issue - State: closed - Opened by schultzm over 4 years ago - 1 comment

#13 - Update documentation and install instructions

Issue - State: closed - Opened by schultzm over 4 years ago

#13 - Update documentation and install instructions

Issue - State: closed - Opened by schultzm over 4 years ago

#12 - create unittest testsuite

Issue - State: closed - Opened by schultzm over 4 years ago - 1 comment

#12 - create unittest testsuite

Issue - State: closed - Opened by schultzm over 4 years ago - 1 comment

#11 - fix `rpy2` imports for `havic depcheck`

Issue - State: closed - Opened by schultzm over 4 years ago - 1 comment

#11 - fix `rpy2` imports for `havic depcheck`

Issue - State: closed - Opened by schultzm over 4 years ago - 1 comment

#10 - update README.md

Issue - State: closed - Opened by schultzm over 4 years ago - 1 comment

#9 - todo list of enhancements

Issue - State: closed - Opened by schultzm over 4 years ago

#9 - todo list of enhancements

Issue - State: closed - Opened by schultzm over 4 years ago

#8 - Convert ruffus pipeline to snakemake

Issue - State: closed - Opened by schultzm over 4 years ago - 2 comments
Labels: help wanted

#7 - remove presets for ncpus

Issue - State: closed - Opened by schultzm over 5 years ago - 1 comment
Labels: enhancement

#6 - allow setting of branch support cutoffs for clusterpicker search

Issue - State: closed - Opened by schultzm over 5 years ago - 1 comment
Labels: enhancement

#5 - allow setting of reference amplicon

Issue - State: closed - Opened by schultzm over 5 years ago - 1 comment
Labels: enhancement

#4 - allow user-selection of distance algorithm

Issue - State: closed - Opened by schultzm over 5 years ago - 1 comment
Labels: enhancement

#3 - trim seqs bug

Issue - State: closed - Opened by schultzm over 5 years ago - 1 comment
Labels: bug, enhancement

#2 - move Ruffus .sqlite database to /tmp

Issue - State: closed - Opened by schultzm almost 7 years ago - 1 comment

#1 - Ensure that duplicate sequence names are considered during trim

Issue - State: closed - Opened by schultzm almost 7 years ago
Labels: enhancement