Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / rust-bio/rust-bio issues and pull requests
#499 - chore: widen range on statrs
Pull Request -
State: closed - Opened by adam-azarchs almost 2 years ago
- 1 comment
#498 - chore: release 1.0.0
Pull Request -
State: closed - Opened by github-actions[bot] almost 2 years ago
- 4 comments
Labels: autorelease: pending
#497 - chore: Fix MSRV build.
Pull Request -
State: closed - Opened by adam-azarchs almost 2 years ago
- 1 comment
#496 - chore: Fix lints from clippy 1.63.
Pull Request -
State: closed - Opened by adam-azarchs almost 2 years ago
- 1 comment
#496 - chore: Fix lints from clippy 1.63.
Pull Request -
State: closed - Opened by adam-azarchs almost 2 years ago
- 1 comment
#495 - DOC: Not documented that FM index / suffix array / BWT require terminal sentinel character
Issue -
State: open - Opened by corneliusroemer almost 2 years ago
- 1 comment
#495 - DOC: Not documented that FM index / suffix array / BWT require terminal sentinel character
Issue -
State: open - Opened by corneliusroemer almost 2 years ago
- 1 comment
#494 - DOC: public fn alignment::sparse::expand_kmer_matches not documented
Issue -
State: open - Opened by corneliusroemer almost 2 years ago
#493 - DOC: Recommended crate twoway is deprecated
Issue -
State: closed - Opened by corneliusroemer almost 2 years ago
#492 - FEAT: Support unicode strings, not just byte sequences
Issue -
State: open - Opened by NickCrews almost 2 years ago
#491 - feat!: Update `strum` and `ordered-float` dependencies and change From<LogProb> into TryFrom<LogProb> for NotNan<f64>.
Pull Request -
State: closed - Opened by evolvedmicrobe about 2 years ago
- 3 comments
#491 - feat!: Update `strum` and `ordered-float` dependencies and change From<LogProb> into TryFrom<LogProb> for NotNan<f64>.
Pull Request -
State: closed - Opened by evolvedmicrobe about 2 years ago
- 3 comments
#490 - feat: Write fasta with fix line width
Pull Request -
State: open - Opened by openpaul about 2 years ago
- 4 comments
#489 - chore: closes #294: add time/space documentation to smallints.rs
Pull Request -
State: closed - Opened by SDeans0 about 2 years ago
- 2 comments
#488 - feat: banded partial order alignments
Pull Request -
State: closed - Opened by wheaton5 about 2 years ago
#488 - Banded poa
Pull Request -
State: open - Opened by wheaton5 about 2 years ago
#487 - chore: release 0.41.0
Pull Request -
State: closed - Opened by github-actions[bot] over 2 years ago
- 1 comment
Labels: autorelease: tagged
#486 - feat: adaptive integration of density functions using a binary search approach that tries to achieve good resolution around the maximum
Pull Request -
State: closed - Opened by huzuner over 2 years ago
- 3 comments
#485 - chore: release 0.40.0
Pull Request -
State: closed - Opened by github-actions[bot] over 2 years ago
- 2 comments
Labels: autorelease: tagged
#485 - chore: release 0.40.0
Pull Request -
State: closed - Opened by github-actions[bot] over 2 years ago
- 2 comments
Labels: autorelease: tagged
#484 - fix: also require BaseSpecificHopParameters when building a new HPHMM
Pull Request -
State: closed - Opened by tedil over 2 years ago
- 1 comment
#483 - fix: pub use BaseSpecificHopParameters
Pull Request -
State: closed - Opened by tedil over 2 years ago
- 1 comment
#482 - Pub use base specific hop parameters
Pull Request -
State: closed - Opened by tedil over 2 years ago
- 1 comment
#481 - chore: release 1.0.0
Pull Request -
State: closed - Opened by github-actions[bot] over 2 years ago
Labels: autorelease: pending
#480 - feat!: base specific hop parameters in homopoly-pair-hmm
Pull Request -
State: closed - Opened by tedil over 2 years ago
- 1 comment
#479 - chore: release 0.39.2
Pull Request -
State: closed - Opened by github-actions[bot] over 2 years ago
- 1 comment
Labels: autorelease: tagged
#478 - fix: overflow in `qgrams` for k=32
Pull Request -
State: closed - Opened by RagnarGrootKoerkamp over 2 years ago
- 6 comments
#477 - Error on cargo build
Issue -
State: closed - Opened by bioibogithub over 2 years ago
- 2 comments
#476 - docs: reorder CHANGELOG and fix headers
Pull Request -
State: closed - Opened by dcroote over 2 years ago
- 1 comment
#475 - chore: release 0.39.1
Pull Request -
State: closed - Opened by github-actions[bot] over 2 years ago
- 1 comment
Labels: autorelease: tagged
#474 - fix: added code to ignore commented lines in a bed file
Pull Request -
State: closed - Opened by mrvollger over 2 years ago
- 6 comments
#473 - bed::Reader does not respect comment lines
Issue -
State: closed - Opened by mrvollger over 2 years ago
- 1 comment
#473 - bed::Reader does not respect comment lines
Issue -
State: closed - Opened by mrvollger over 2 years ago
- 1 comment
#472 - FASTA/Q sequence record check insufficient
Issue -
State: open - Opened by ebioman over 2 years ago
- 1 comment
#471 - fix: Make QGramIndex use less memory; add docs; fix bug
Pull Request -
State: closed - Opened by RagnarGrootKoerkamp over 2 years ago
- 2 comments
#470 - feat: Add UPGMA, Neighbor-Joining, and Robinson-Foulds metric
Pull Request -
State: open - Opened by RagnarGrootKoerkamp over 2 years ago
#469 - feat: Add IO for DistanceMatrix in Phylip format
Pull Request -
State: open - Opened by RagnarGrootKoerkamp over 2 years ago
#468 - feat: Add to_string method for Newick IO
Pull Request -
State: open - Opened by RagnarGrootKoerkamp over 2 years ago
- 1 comment
#468 - feat: Add to_string method for Newick IO
Pull Request -
State: open - Opened by RagnarGrootKoerkamp over 2 years ago
- 1 comment
#467 - Tracking issue for phylogeny reconstruction algorithms
Issue -
State: open - Opened by RagnarGrootKoerkamp over 2 years ago
#466 - test: fix compilation for fmindex benchmark.
Pull Request -
State: closed - Opened by adam-azarchs over 2 years ago
- 1 comment
#465 - chore: widen range for strum, remove fnv.
Pull Request -
State: closed - Opened by adam-azarchs over 2 years ago
- 1 comment
#464 - chore: Allow update of petgraph to 0.6.
Pull Request -
State: closed - Opened by adam-azarchs over 2 years ago
- 2 comments
#464 - chore: Allow update of petgraph to 0.6.
Pull Request -
State: closed - Opened by adam-azarchs over 2 years ago
- 2 comments
#463 - feat: allow iteration over posteriors in Bayesian model
Pull Request -
State: open - Opened by johanneskoester over 2 years ago
- 1 comment
#463 - feat: allow iteration over posteriors in Bayesian model
Pull Request -
State: open - Opened by johanneskoester over 2 years ago
- 1 comment
#462 - Expanding the bed record to bed12
Issue -
State: open - Opened by mrvollger over 2 years ago
#461 - chore: Add minimum supported Rust version to README and CI
Pull Request -
State: closed - Opened by luiz10x over 2 years ago
- 1 comment
#460 - refactor: Using submodules as features
Pull Request -
State: open - Opened by luiz10x over 2 years ago
- 3 comments
#459 - Curious about reading 3 column bed file into IntervalTree
Issue -
State: closed - Opened by jelber2 over 2 years ago
- 6 comments
#458 - chore: release 0.39.0
Pull Request -
State: closed - Opened by github-actions[bot] over 2 years ago
- 1 comment
Labels: autorelease: tagged
#457 - feat: Backward search api
Pull Request -
State: closed - Opened by rob-p over 2 years ago
- 4 comments
#457 - feat: Backward search api
Pull Request -
State: closed - Opened by rob-p over 2 years ago
- 4 comments
#456 - refactor: Apply clippy lints
Pull Request -
State: closed - Opened by fxwiegand over 2 years ago
- 1 comment
Labels: clippy
#456 - refactor: Apply clippy lints
Pull Request -
State: closed - Opened by fxwiegand over 2 years ago
- 1 comment
Labels: clippy
#454 - Potentially incorrect positions from fm-index backward_search
Issue -
State: closed - Opened by rob-p over 2 years ago
- 13 comments
#452 - Why so many stale branches ?
Issue -
State: open - Opened by stormasm almost 3 years ago
- 2 comments
#451 - chore: release 0.38.0
Pull Request -
State: closed - Opened by github-actions[bot] almost 3 years ago
- 1 comment
Labels: autorelease: tagged
#445 - chore: Update dependencies and clean up crate archive.
Pull Request -
State: closed - Opened by adam-azarchs almost 3 years ago
#444 - feat: adds iupac amino acid alpha
Pull Request -
State: closed - Opened by tshauck almost 3 years ago
#443 - Partial order alignment gives incorrect graph when the first position is a mismatch
Issue -
State: closed - Opened by arcresu almost 3 years ago
- 1 comment
#442 - feat: Generic record
Pull Request -
State: open - Opened by lskatz almost 3 years ago
- 12 comments
#439 - chore: Widen dependency version ranges.
Pull Request -
State: closed - Opened by adam-azarchs almost 3 years ago
- 1 comment
#439 - chore: Widen dependency version ranges.
Pull Request -
State: closed - Opened by adam-azarchs almost 3 years ago
- 1 comment
#433 - feat: FASTA/FASTQ unification
Pull Request -
State: open - Opened by morsecodist about 3 years ago
- 14 comments
#429 - widen ndarray dependency and fix warning
Pull Request -
State: open - Opened by DavidBJaffe about 3 years ago
- 1 comment
#424 - allow gap penalties to be a function of position on reference
Pull Request -
State: open - Opened by DavidBJaffe about 3 years ago
- 1 comment
#404 - error[E0046]: not all trait items implemented, missing: `is_empty`
Issue -
State: closed - Opened by simenbm over 3 years ago
- 1 comment
#396 - Extension traits on Text/TextSlice for common biological sequence modifications
Pull Request -
State: open - Opened by xyl012 over 3 years ago
- 14 comments
#387 - Last record of fastq file being incomplete has the possibility to deadlock.
Pull Request -
State: open - Opened by wtzhang23 over 3 years ago
#383 - Wrap comments
Pull Request -
State: open - Opened by TianyiShi2001 over 3 years ago
#382 - Improve lib rs
Pull Request -
State: open - Opened by TianyiShi2001 over 3 years ago
Labels: WIP
#381 - fix cargo doc warnings
Pull Request -
State: closed - Opened by TianyiShi2001 over 3 years ago
- 1 comment
Labels: Review and Merge
#381 - fix cargo doc warnings
Pull Request -
State: closed - Opened by TianyiShi2001 over 3 years ago
- 1 comment
Labels: Review and Merge
#379 - Reimplement the current alignment::Aligner without breaking API
Pull Request -
State: open - Opened by TianyiShi2001 over 3 years ago
- 4 comments
Labels: WIP
#378 - added BioFerris to rustdoc
Pull Request -
State: closed - Opened by TianyiShi2001 over 3 years ago
Labels: documentation
#378 - added BioFerris to rustdoc
Pull Request -
State: closed - Opened by TianyiShi2001 over 3 years ago
Labels: documentation
#366 - Implement the WFA algorithm
Issue -
State: open - Opened by TianyiShi2001 almost 4 years ago
- 6 comments
Labels: new feature
#342 - Restructure rust-bio to speedup compilation and reduce dependencies
Issue -
State: open - Opened by natir almost 4 years ago
- 24 comments
#338 - Quick fix floating point error in gcn_content
Pull Request -
State: closed - Opened by tedil almost 4 years ago
- 1 comment
#334 - Allow IntoIterator as input to qgram index.
Pull Request -
State: closed - Opened by johanneskoester almost 4 years ago
- 1 comment
#334 - Allow IntoIterator as input to qgram index.
Pull Request -
State: closed - Opened by johanneskoester almost 4 years ago
- 1 comment
#316 - stats::probs::cdf improve docs
Pull Request -
State: closed - Opened by dlaehnemann almost 4 years ago
- 1 comment
#307 - Fix doctests
Pull Request -
State: closed - Opened by tedil almost 4 years ago
- 1 comment
#294 - improve docs: `data_structures::smallints`
Issue -
State: closed - Opened by dlaehnemann almost 4 years ago
Labels: documentation
#260 - Revert "Handle wrapped fastq files"
Pull Request -
State: closed - Opened by johanneskoester over 4 years ago
- 1 comment
#246 - example of getting the consensus of multiple sequences?
Issue -
State: closed - Opened by dongweigogo over 4 years ago
- 6 comments
#224 - Trait system for bayesian statistical modelling
Pull Request -
State: closed - Opened by johanneskoester about 5 years ago
- 1 comment
#197 - Interpolation table. Updated ordered_float dependency.
Pull Request -
State: closed - Opened by johanneskoester over 5 years ago
#197 - Interpolation table. Updated ordered_float dependency.
Pull Request -
State: closed - Opened by johanneskoester over 5 years ago
#116 - Make gff/gtf parser more robust by using regular expressions for attribute parsing.
Pull Request -
State: closed - Opened by johanneskoester over 7 years ago
- 5 comments
#112 - Switch to new serde compatible with stable rust.
Pull Request -
State: closed - Opened by johanneskoester over 7 years ago
- 1 comment
#84 - Use From instead of NumCast when integrating over logprobs.
Pull Request -
State: closed - Opened by johanneskoester almost 8 years ago
#83 - Bayesian
Pull Request -
State: closed - Opened by johanneskoester almost 8 years ago
#77 - Add CDF implementation.
Pull Request -
State: closed - Opened by johanneskoester almost 8 years ago
- 5 comments
#27 - Join the team!
Issue -
State: closed - Opened by johanneskoester over 8 years ago
- 88 comments
#3 - Roadmap / Todos
Issue -
State: open - Opened by johanneskoester over 9 years ago
- 68 comments