Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / rtcga/RTCGA issues and pull requests

#125 - Data Format Link Leads to NIH Log-in Webpage

Issue - State: open - Opened by DarioS over 1 year ago

#124 - Not an issue, but a question

Issue - State: closed - Opened by JuliaArizanova over 2 years ago - 1 comment

#123 - expressionsTCGA does not return KIRP.rnaseq data.

Issue - State: open - Opened by laixn about 5 years ago

#122 - Survival data information maybe outdated?

Issue - State: closed - Opened by hsiowa2 about 5 years ago - 1 comment

#121 - Some cancer type data cannot download.

Issue - State: closed - Opened by seedson about 6 years ago - 1 comment

#120 - browseVignettes("RTCGA.clinical") is not working.

Issue - State: closed - Opened by boseb about 6 years ago - 1 comment

#119 - Couldn't find "KLHL35" gene in BRCA.mRNA

Issue - State: closed - Opened by zyb1984 about 6 years ago - 1 comment

#118 - Unable to install 20160128 packages

Issue - State: closed - Opened by ghost over 6 years ago - 5 comments

#117 - Bad error message when running KM curve analysis

Issue - State: closed - Opened by atakanekiz over 6 years ago - 6 comments

#116 - Where to get list of extract.cols type in survivalTCGA

Issue - State: closed - Opened by shaneahmed over 7 years ago

#115 - Can not install RTCGA.mutations.20160128

Issue - State: closed - Opened by xiefe over 7 years ago - 1 comment

#114 - Inconsistent Sample Identifiers

Issue - State: closed - Opened by DarioS over 7 years ago - 3 comments

#113 - How to deal with the error:Error in dirname(name) : path too long

Issue - State: closed - Opened by cqneosun over 7 years ago - 1 comment

#112 - RTCGA 1.6.0 - ERROR in the RELEASE

Issue - State: closed - Opened by MarcinKosinski over 7 years ago

#111 - can not install

Issue - State: closed - Opened by cqneosun over 7 years ago - 3 comments

#110 - onLoad improvements in createTCGA

Issue - State: closed - Opened by MarcinKosinski about 8 years ago - 1 comment

#109 - validate metadata in data packages

Issue - State: closed - Opened by MarcinKosinski about 8 years ago - 1 comment

#108 - Date in the vignette in data packages and createTCGA

Issue - State: closed - Opened by MarcinKosinski about 8 years ago - 1 comment

#107 - Extend man pages for data packages

Issue - State: closed - Opened by MarcinKosinski about 8 years ago - 1 comment

#105 - Add more biocView to data packages from 20160128

Issue - State: closed - Opened by MarcinKosinski about 8 years ago - 1 comment

#104 - postdoctoral

Issue - State: closed - Opened by Jianjiao83 about 8 years ago - 1 comment

#102 - blog post -> n days m packages - RTCGA factory is back

Issue - State: closed - Opened by MarcinKosinski about 8 years ago - 1 comment

#101 - update datasetsTCGA with newest packages from 20160128

Issue - State: closed - Opened by MarcinKosinski about 8 years ago - 1 comment

#100 - updatde RTCGA workflow graph

Issue - State: closed - Opened by MarcinKosinski about 8 years ago - 1 comment

#99 - add CNV method to readTCGA for CNV data and upload CNV.20160128

Issue - State: closed - Opened by MarcinKosinski about 8 years ago - 1 comment

#98 - RTCGA broke due to survminer due to ggplot2 ver 2.2.0

Issue - State: closed - Opened by MarcinKosinski about 8 years ago - 1 comment

#97 - Survival plots against genes expression in RTCGA

Issue - State: closed - Opened by MarcinKosinski about 8 years ago - 8 comments

#96 - ADD BIOCCHECK TO TRAVIS

Issue - State: closed - Opened by MarcinKosinski about 8 years ago - 1 comment

#95 - OV.mutations has many rows with entries as column names

Issue - State: closed - Opened by kieranrcampbell over 8 years ago - 2 comments

#94 - update SVN mirror after fix in #93

Issue - State: closed - Opened by MarcinKosinski over 8 years ago - 3 comments

#93 - Fix RTCGA failures on bioconductor

Issue - State: closed - Opened by MarcinKosinski over 8 years ago

#92 - methylation Data - explained: level 3 and platform HM27

Issue - State: closed - Opened by lemon86 over 8 years ago - 1 comment

#91 - closure of TCGA data portal

Issue - State: closed - Opened by vobencha over 8 years ago - 2 comments

#90 - Big data use case missing plots

Issue - State: closed - Opened by MarcinKosinski over 8 years ago - 1 comment

#89 - RTCGA/widget and flexdashboard

Issue - State: closed - Opened by MarcinKosinski over 8 years ago - 1 comment

#88 - Flexdashboard with workflow and description

Issue - State: closed - Opened by MarcinKosinski over 8 years ago - 2 comments

#87 - Feature Selection / Use Case

Issue - State: closed - Opened by MarcinKosinski over 8 years ago - 2 comments
Labels: marketing

#86 - CREATE PKGDOWN

Issue - State: closed - Opened by MarcinKosinski over 8 years ago - 2 comments
Labels: marketing

#85 - RTCGA data to ExperimentHub

Issue - State: open - Opened by MarcinKosinski over 8 years ago - 18 comments
Labels: help wanted

#84 - update static docs for ver 1.2.0 after bioc release

Issue - State: closed - Opened by MarcinKosinski over 8 years ago

#83 - create version badgesand download badges for bioconductor

Issue - State: closed - Opened by MarcinKosinski over 8 years ago - 1 comment

#82 - Add Quick Tour to RTCGA website

Issue - State: closed - Opened by MarcinKosinski over 8 years ago

#81 - add length parameter to untar :P

Issue - State: closed - Opened by MarcinKosinski over 8 years ago - 5 comments
Labels: invalid, wontfix

#80 - add staticdocs to website

Issue - State: closed - Opened by MarcinKosinski over 8 years ago - 1 comment

#79 - remove coxphTCGA from workflow graph

Issue - State: closed - Opened by MarcinKosinski over 8 years ago

#78 - Consider ExpressionHub for new TCGA date of release

Issue - State: closed - Opened by MarcinKosinski over 8 years ago - 1 comment

#77 - Update man page for RTCGA.rnaseq in bioc devel, before release on may 4th

Issue - State: closed - Opened by MarcinKosinski over 8 years ago - 1 comment

#76 - RTCGA Installation

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 1 comment
Labels: marketing

#75 - jekyll website VS ReadTheDocs

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 2 comments
Labels: question

#74 - http://www.r-bloggers.com/using-travis-make-sure-you-use-a-github-pat/

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 1 comment
Labels: wontfix

#73 - wider webpage thanks to knitr-lanyon

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago

#71 - wider images in Visualizations in webpage

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago

#70 - biolinks article :<

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 1 comment

#69 - additional parameters for survivalTCGA

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago

#68 - rewrite BigData use case with functions from RTCGA

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 16 comments

#66 - add axis labelling to heatmapTCGA

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago

#65 - add Issue section to each manual page

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago

#64 - update kmTCGA

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago

#63 - update ggcoxfunctional

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 1 comment

#62 - Website: update kmTCGA plots with shorter strata :)

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago
Labels: TODO, marketing

#61 - ASK ON MAILIING LIST ABOUT: Update data packages with new data 2016 "2016-01-28" and synchronize devel and release versions of data packages

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 2 comments
Labels: enhancement, help wanted, management

#60 - Website: add info about data download

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 2 comments
Labels: TODO, marketing

#59 - Website: add info about heatmapTCGA

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 1 comment
Labels: TODO, marketing

#58 - Typo in the project overview

Issue - State: closed - Opened by pbiecek almost 9 years ago - 1 comment

#57 - Cant install package wrong version of R

Issue - State: closed - Opened by jhagberg almost 9 years ago - 1 comment

#56 - how to find CIC copy number change (deletion) in each type of cancer using RTCGA

Issue - State: closed - Opened by DecodeGenome almost 9 years ago - 3 comments

#55 - add coxTCGA

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 2 comments
Labels: functionality

#54 - add issue template

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago

#53 - add heatmapTCGA function

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago
Labels: functionality

#51 - LAML.rnaseq in not in RTCGA.rnaseq

Issue - State: closed - Opened by DecodeGenome almost 9 years ago - 1 comment

#50 - The code for example plot is not reproducible

Issue - State: closed - Opened by DecodeGenome almost 9 years ago - 1 comment

#49 - can't install devtools in R for RTCGA

Issue - State: closed - Opened by DecodeGenome almost 9 years ago - 1 comment

#48 - Use do.call to execute survfit

Pull Request - State: closed - Opened by kassambara almost 9 years ago

#47 - update readTCGA function

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 2 comments

#46 - Shiny webapp for protein exprssion

Issue - State: closed - Opened by pbiecek almost 9 years ago - 3 comments
Labels: enhancement

#45 - Shiny webapp for methylation

Issue - State: closed - Opened by pbiecek almost 9 years ago - 6 comments
Labels: enhancement

#44 - Shiny webapp for gene mutations

Issue - State: closed - Opened by pbiecek almost 9 years ago - 5 comments
Labels: enhancement

#43 - add mutationsTCGA function

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago
Labels: functionality

#42 - RTCGA worklow/pipepline graph

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 3 comments
Labels: marketing

#40 - add theme_RTCGA

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 9 comments

#39 - create better website

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 1 comment
Labels: marketing

#38 - add boxplotTCGA function

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 5 comments
Labels: functionality

#37 - add pcaTCGA function

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 1 comment
Labels: functionality

#36 - add kmTCGA function

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 2 comments
Labels: duplicate

#35 - add extract survival function for RTCGA.clinical

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 9 comments
Labels: functionality

#34 - Blog about RTCGA + send info to bioc-devel mailing list afterwards

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 2 comments
Labels: marketing

#33 - Add RTCGA poster to vignettes

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 4 comments
Labels: marketing

#32 - Synchronize devel versions of rnaseq, clinical and mutations to release in Bioconductor

Issue - State: closed - Opened by MarcinKosinski almost 9 years ago - 2 comments
Labels: management

#31 - Shiny webapp for gene expression

Issue - State: closed - Opened by pbiecek almost 9 years ago - 20 comments
Labels: enhancement

#29 - Proposition of new data package: RTCGA.isoforms

Issue - State: closed - Opened by MarcinKosinski about 9 years ago - 2 comments
Labels: proposition

#26 - update bioconductor after these changes

Issue - State: closed - Opened by wchodor about 9 years ago - 1 comment

#25 - extend documentation of each package with info about install, convert functions

Issue - State: closed - Opened by wchodor about 9 years ago - 1 comment

#22 - add installRTCGA and convertRTCGA

Issue - State: closed - Opened by wchodor about 9 years ago - 1 comment