ropensci/traits issues and pull requests

#136 - Changed 'country' to 'geo_loc_name' in `ncbi_byid()` #135

Pull Request - State: open - Opened by boopsboops 3 months ago

#135 - NCBI changed 'country' qualifier to 'geo_loc_name' in `ncbi_byid()`

Issue - State: open - Opened by boopsboops 3 months ago

#134 - Archive on Zenodo, add doi to README and CITATION.cff

Pull Request - State: closed - Opened by dlebauer 4 months ago

#133 - Add citation

Pull Request - State: closed - Opened by dlebauer 5 months ago

#132 - fix errors with ncbi_byname reported in #126

Pull Request - State: open - Opened by dlebauer 5 months ago

#131 - no EOL Cypher key found for traitbank

Issue - State: closed - Opened by dlebauer 5 months ago - 1 comment

#130 - Release traits 0.5.1

Issue - State: closed - Opened by dlebauer 5 months ago - 1 comment

#129 - Error : Bad Request (HTTP 400)

Issue - State: open - Opened by babinecha 7 months ago - 1 comment

#128 - change maintainer on cran

Issue - State: closed - Opened by sckott almost 2 years ago - 2 comments

#127 - maintainer change

Pull Request - State: closed - Opened by dlebauer about 2 years ago

#126 - odd errors with sequence length queries at ncbi_byname

Issue - State: open - Opened by kdlafferty over 2 years ago - 8 comments
Labels: bug

#125 - ncbi_byname('Zea mays','internal transcribed spacer') giving always "Error : Bad Request (HTTP 400)"

Issue - State: closed - Opened by rodrigo1406 over 3 years ago - 5 comments

#124 - coral API down, make coral fxns defunct

Issue - State: closed - Opened by sckott about 4 years ago

#123 - fix betydb tests

Pull Request - State: closed - Opened by dlebauer about 4 years ago - 1 comment

#122 - usda api is gone for good

Issue - State: closed - Opened by sckott about 4 years ago

#121 - betydb test failures

Issue - State: closed - Opened by sckott about 4 years ago

#120 - ncbi_searcher Error in taxonomy(zz = outsum) : Too Many Requests (RFC 6585) (HTTP 429).

Issue - State: closed - Opened by mpnelsen about 4 years ago - 8 comments
Labels: bug

#119 - from EOL folks

Issue - State: closed - Opened by sckott over 4 years ago
Labels: from-email

#118 - Unauthorized (HTTP 401) in betydb_query

Issue - State: closed - Opened by serbinsh over 4 years ago - 5 comments

#117 - EOL traitbank query

Issue - State: closed - Opened by BenMerSci over 4 years ago - 4 comments

#116 - Add titles to vignettes

Issue - State: closed - Opened by jeroen almost 5 years ago - 1 comment

#115 - fix taxa_search: traitbank used internally, but it's been changed drastically

Issue - State: closed - Opened by sckott over 5 years ago
Labels: bug

#114 - add alias API version beta == v1

Pull Request - State: closed - Opened by dlebauer over 5 years ago - 6 comments

#113 - betydb, add param to optionally suppress progress bar

Issue - State: closed - Opened by sckott over 5 years ago

#112 - EoL TraitBank: error 404 on all species.

Issue - State: closed - Opened by rvosa almost 6 years ago - 3 comments

#111 - Add a short sentence defining what a trait is

Issue - State: closed - Opened by maelle about 6 years ago - 2 comments

#110 - Docs: overview of sources

Issue - State: closed - Opened by maelle about 6 years ago - 1 comment

#109 - EOL pageid

Issue - State: closed - Opened by maelle about 6 years ago - 3 comments

#108 - BirdLife link

Issue - State: closed - Opened by maelle about 6 years ago - 3 comments

#107 - Fixes ncbi_searcher error on some queries

Pull Request - State: closed - Opened by zachary-foster over 6 years ago - 2 comments

#106 - add Chris Black to authors

Pull Request - State: closed - Opened by dlebauer over 6 years ago - 1 comment

#105 - Reptile life history trait database

Issue - State: open - Opened by ahhurlbert almost 7 years ago - 3 comments
Labels: datasource

#104 - AmphiBIO trait database for amphibians

Issue - State: closed - Opened by ahhurlbert almost 7 years ago - 2 comments
Labels: datasource

#103 - Support Bety api `v1`

Issue - State: closed - Opened by infotroph almost 7 years ago - 7 comments

#102 - Added 10 new fields to ncbi_byid

Pull Request - State: closed - Opened by boopsboops almost 7 years ago - 3 comments

#101 - Extending ncbi_byid

Issue - State: closed - Opened by boopsboops almost 7 years ago - 5 comments

#100 - birdlife fxns broken

Issue - State: closed - Opened by sckott about 7 years ago
Labels: bug

#99 - coral base api url is now https

Issue - State: closed - Opened by sckott about 7 years ago

#98 - namespace fxn calls for base pkgs, remove as imports

Issue - State: closed - Opened by sckott about 7 years ago

#97 - xml_find_one to xml_find_first

Issue - State: closed - Opened by sckott about 7 years ago

#96 - ncbi_ functions: make NAs in no results be NA_character

Issue - State: closed - Opened by sckott about 7 years ago

#95 - NCBI fxns need https urls now

Issue - State: closed - Opened by sckott over 7 years ago
Labels: bug, from-email

#94 - Enable paging for betydb functions

Pull Request - State: closed - Opened by dlebauer over 7 years ago - 9 comments

#93 - next cran push

Issue - State: closed - Opened by sckott over 7 years ago - 7 comments

#92 - `\%>\%` in betydb_query examples

Issue - State: closed - Opened by infotroph over 7 years ago - 3 comments

#91 - add seealso link for betydb_query in main betydb doc

Issue - State: closed - Opened by infotroph over 7 years ago - 1 comment

#90 - datasource: Funguild?

Issue - State: open - Opened by zachary-foster over 7 years ago - 6 comments
Labels: datasource

#89 - replace httr with crul

Issue - State: closed - Opened by sckott over 7 years ago - 1 comment

#88 - BETY cleanup

Pull Request - State: closed - Opened by infotroph over 7 years ago - 6 comments

#87 - Bety: Document include_unchecked

Issue - State: closed - Opened by infotroph over 7 years ago - 1 comment

#86 - Fix broken build

Pull Request - State: closed - Opened by dlebauer over 7 years ago - 1 comment

#85 - define arguments to ncbi_byname causing build fail

Pull Request - State: closed - Opened by dlebauer over 7 years ago - 2 comments

#84 - Use cases for non-ID search fields in singular betydb_* functions

Issue - State: closed - Opened by infotroph over 7 years ago - 7 comments

#83 - Accept multiple IDs in betydb_*(id=...)?

Issue - State: closed - Opened by infotroph over 7 years ago - 4 comments

#82 - Refactor Betydb functions to support new API

Pull Request - State: closed - Opened by infotroph over 7 years ago - 12 comments

#81 - ncbi_byname behavior question

Issue - State: closed - Opened by sckott over 7 years ago - 2 comments
Labels: from-email

#80 - eol traitbank updated to reflect current API results

Pull Request - State: closed - Opened by dschlaep over 7 years ago - 3 comments

#79 - traitbank() not working for me

Issue - State: closed - Opened by mabarbour almost 8 years ago - 6 comments
Labels: bug

#78 - Provide api endpoints in betydb fn documentation

Pull Request - State: closed - Opened by dlebauer about 8 years ago - 2 comments

#77 - Refactor generic betydb functions to use new BETYdb API

Issue - State: closed - Opened by dlebauer about 8 years ago - 4 comments

#76 - require readr >= 1.0.0

Issue - State: closed - Opened by sckott about 8 years ago

#75 - Add url parameter to betydb functions

Pull Request - State: closed - Opened by dlebauer over 8 years ago - 5 comments

#74 - How can I make url an optional parameter in betydb_* functions?

Issue - State: closed - Opened by dlebauer over 8 years ago - 5 comments

#73 - plant growth form data

Issue - State: closed - Opened by wcornwell over 8 years ago - 2 comments
Labels: datasource

#72 - Make origin fxns defunct once originr is on CRAN

Issue - State: closed - Opened by sckott over 8 years ago - 1 comment

#71 - ncbi_byid does not return full taxon names

Issue - State: closed - Opened by sborstein over 8 years ago - 6 comments

#70 - resolves #69

Pull Request - State: closed - Opened by zachary-foster over 8 years ago

#69 - ncbi_searcher: prefix for refseq acc_no trimmed

Issue - State: closed - Opened by mpnelsen over 8 years ago - 8 comments

#68 - leda() fails, needs to be parsed as raw, then converted to char

Issue - State: closed - Opened by sckott over 8 years ago

#67 - Replace XML with xml2

Issue - State: closed - Opened by sckott over 8 years ago

#66 - resolves #64; fixes ncbi_searcher XML parsing error

Pull Request - State: closed - Opened by zachary-foster over 8 years ago - 1 comment

#65 - Fix httr::content calls - text parse and encoding

Issue - State: closed - Opened by sckott over 8 years ago

#64 - ncbi_searcher XML parsing error

Issue - State: closed - Opened by zachary-foster over 8 years ago - 4 comments
Labels: bug

#63 - Mark native/invasive (aka origin) functions as deprecated

Issue - State: closed - Opened by sckott over 8 years ago - 1 comment

#62 - Bring Traitbank back up when it's online again

Issue - State: closed - Opened by sckott over 8 years ago

#61 - Revisit USDA plants database

Issue - State: closed - Opened by sckott over 8 years ago - 1 comment
Labels: datasource

#60 - Morgan's trait database

Issue - State: closed - Opened by sckott over 8 years ago - 1 comment
Labels: datasource

#59 - Make EOL defunct for now

Issue - State: closed - Opened by sckott over 8 years ago - 2 comments

#58 - LEDA is gone, defunct fxn

Issue - State: closed - Opened by sckott over 8 years ago - 1 comment

#57 - EOL Traitbank Error

Issue - State: closed - Opened by Rekyt over 8 years ago - 9 comments