Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / raerose01/deconstructSigs issues and pull requests
#78 - Question regarding combine mutational signature from different resources
Issue -
State: open - Opened by marshelma 4 months ago
#77 - tri.counts.method for hg38 genome
Issue -
State: open - Opened by tanubrata 10 months ago
#76 - Switch df[,col] to df[[col]] to get column vectors
Pull Request -
State: open - Opened by rhagenson about 1 year ago
#75 - Enable the usage of custom genome and exome in whichSignatures
Pull Request -
State: open - Opened by Yunuuuu over 1 year ago
- 1 comment
#74 - moving data content to sysdata?
Issue -
State: open - Opened by pawelqs almost 2 years ago
#73 - whichsignatures not working
Issue -
State: open - Opened by temizna over 2 years ago
#72 - Normalisation approaches for targeted panels
Issue -
State: open - Opened by ARChakravarthy over 2 years ago
- 1 comment
#71 - Please release v1.9.0 for automated installations
Issue -
State: closed - Opened by naumenko-sa over 3 years ago
- 2 comments
#70 - Update whichSignatures.R
Pull Request -
State: open - Opened by ljl-suosi over 3 years ago
- 2 comments
#69 - Was blacklist used to create tri.count.genome?
Issue -
State: closed - Opened by yasunorikogure over 3 years ago
- 2 comments
#68 - Normalization method for whole exome data
Issue -
State: open - Opened by seunghun23 over 3 years ago
#67 - mut.to.sigs.input for DBS signatures creates empty output
Issue -
State: open - Opened by kittysher almost 4 years ago
- 5 comments
#66 - Update to Mutational Signatures (v3.1 - June 2020)
Issue -
State: closed - Opened by kvaldez almost 4 years ago
- 1 comment
#65 - plotSignatures do not display title
Issue -
State: open - Opened by Jingjiao-ma about 4 years ago
- 1 comment
#64 - normalization of hg38 exome
Issue -
State: open - Opened by ChelseaCHENX about 4 years ago
- 1 comment
#63 - vcf.to.sigs.input() Error arguments imply differing number of rows: 1, 0
Issue -
State: open - Opened by alpreyes about 4 years ago
- 4 comments
#62 - Cosine Similarity
Issue -
State: open - Opened by DarioS about 4 years ago
#61 - Error With bwakit Alignments
Issue -
State: open - Opened by DarioS about 4 years ago
#60 - update to COSMIC Mutational Signatures (v3 - May 2019)
Issue -
State: closed - Opened by chjp about 4 years ago
- 1 comment
#59 - mut.to.sigs.input for DBS
Issue -
State: closed - Opened by darwinchangz over 4 years ago
- 1 comment
#58 - Doubt when using updated signature matrices
Issue -
State: closed - Opened by Dagsbio over 4 years ago
- 1 comment
#57 - Added stacked bar chart and smart db colouring
Pull Request -
State: closed - Opened by sfacista over 4 years ago
- 1 comment
#56 - New COSMIC signatures (v3)
Issue -
State: closed - Opened by rahulk87 over 4 years ago
- 4 comments
#55 - Fix DBS input from file
Pull Request -
State: closed - Opened by rbonneville over 4 years ago
#54 - Plotting the signatures gives error
Issue -
State: closed - Opened by beginner984 over 4 years ago
- 1 comment
#53 - Issue in mut.to.sigs.input, "Error in ans[] <- x : replacement has length zero"
Issue -
State: closed - Opened by Salvobioinfo over 4 years ago
- 4 comments
#52 - "signature weights" no longer displayed in graphics
Issue -
State: closed - Opened by spete021 over 4 years ago
- 4 comments
#51 - Trinucleotide Counts for More Genomes
Issue -
State: open - Opened by DarioS about 5 years ago
#50 - signature matrix for new Alexandrov SBS signatures?
Issue -
State: closed - Opened by emham about 5 years ago
- 8 comments
#49 - makePie fails with only 1 signature weight non-zero and/or with unknown=0
Issue -
State: open - Opened by tedtoal over 5 years ago
#48 - Unknown error with my data
Issue -
State: open - Opened by beginner984 over 5 years ago
#47 - custom panel normalization
Issue -
State: open - Opened by idanbudin over 5 years ago
- 1 comment
#46 - Error on installation
Issue -
State: closed - Opened by mozack over 5 years ago
- 3 comments
#45 - Mutational Signatures for mouse mutation data?
Issue -
State: open - Opened by SNRNS over 5 years ago
#44 - How to make signatures for multiple samples at once?
Issue -
State: open - Opened by stevekm over 5 years ago
#43 - Filtering exome SNVs
Issue -
State: open - Opened by ysbioinfo over 5 years ago
#42 - h38 support for deconstructSigs
Issue -
State: closed - Opened by AdamuUu over 5 years ago
- 1 comment
#41 - Error in FUN(left, right) : non-numeric argument to binary operator
Issue -
State: closed - Opened by Gandalfy almost 6 years ago
- 3 comments
#40 - A suspected bug leading to "Error in `[.data.frame`(x, i, j) : undefined columns selected" in "mut.to.sigs.input"
Issue -
State: closed - Opened by b-niu almost 6 years ago
- 4 comments
#39 - mut.to.sigs.input out of memory error
Issue -
State: closed - Opened by lpalomerol almost 6 years ago
- 1 comment
#38 - mut.to.sigs.input function does not work even on sample data
Issue -
State: closed - Opened by mkkuhner almost 6 years ago
- 3 comments
#37 - Tri nucleoide frequency for exome data
Issue -
State: closed - Opened by fitbio almost 6 years ago
- 4 comments
#36 - Re:tri nucleotide frequency of exome and genome.
Issue -
State: closed - Opened by aslam24 almost 6 years ago
- 1 comment
#35 - error in converting vcf to sigs.input
Issue -
State: closed - Opened by Sumithrasank about 6 years ago
- 1 comment
#34 - Weighting of mutations
Issue -
State: open - Opened by lima1 about 6 years ago
#33 - subscript out of bounds
Issue -
State: closed - Opened by ZackDC about 6 years ago
- 4 comments
#32 - Possible to save `plotSignatures` object and print later?
Issue -
State: closed - Opened by stevekm about 6 years ago
- 4 comments
#31 - chr name problem for GRCh38
Issue -
State: open - Opened by Wszwei about 6 years ago
#30 - Using variants from chromosome X and Y
Issue -
State: closed - Opened by Rashesh7 about 6 years ago
#29 - Error in validObject(.Object) : invalid class “DNAStringSet” object: undefined class for slot "elementMetadata" ("DataTableORNULL")
Issue -
State: closed - Opened by fjptwenger over 6 years ago
- 1 comment
#28 - question about the tri.count.method
Issue -
State: closed - Opened by MariaCartolano over 6 years ago
- 1 comment
#27 - issue with BSgenome.Hsapiens.UCSC.hg38 in mut.to.sigs.input function
Issue -
State: closed - Opened by Puputnik over 6 years ago
- 3 comments
#26 - "Check ref bases -- not all match context" warning message
Issue -
State: closed - Opened by stevekm over 6 years ago
- 4 comments
#25 - Normalization method for RNA-Seq data?
Issue -
State: open - Opened by stevekm over 6 years ago
#24 - vcf.to.sigs.input breaks when file contains annotations (ID field)
Issue -
State: open - Opened by markozecevic over 6 years ago
#23 - Many Samples in my Maf files
Issue -
State: closed - Opened by AteeqMKhaliq almost 7 years ago
- 3 comments
#22 - Problem w plotSignatures and makePie
Issue -
State: closed - Opened by lelawrence almost 7 years ago
#21 - SSE threshold
Issue -
State: closed - Opened by Rashesh7 almost 7 years ago
#20 - Use with non-human genome
Issue -
State: closed - Opened by nriddiford almost 7 years ago
- 19 comments
#19 - mut.to.sigs.input Error in GrCH38
Issue -
State: closed - Opened by mgala81 about 7 years ago
- 4 comments
#18 - More normalization
Issue -
State: open - Opened by sigven about 7 years ago
#17 - Normalisation to spesific TF context?
Issue -
State: closed - Opened by mortunco about 7 years ago
- 2 comments
#16 - non-default genomes
Issue -
State: closed - Opened by rsiddaway about 7 years ago
- 2 comments
#15 - problem with mut.to.sigs.input
Issue -
State: closed - Opened by juansearch about 7 years ago
- 4 comments
#14 - Update vcf.to.sigs.input.R
Pull Request -
State: closed - Opened by csardas about 7 years ago
#13 - vcf.to.sigs.input() size of alt1 is empty
Issue -
State: closed - Opened by csardas about 7 years ago
#12 - Whole Genome normalization question
Issue -
State: closed - Opened by Rashesh7 over 7 years ago
- 5 comments
#11 - The ESCA data
Issue -
State: closed - Opened by Rashesh7 over 7 years ago
- 1 comment
#10 - Mutation Limit
Issue -
State: closed - Opened by Lab13UBIMED over 7 years ago
- 2 comments
#9 - change the colors of the plotSignatures function
Issue -
State: closed - Opened by alexvat over 7 years ago
- 2 comments
#8 - Save plots to a file
Issue -
State: closed - Opened by patidarr over 7 years ago
- 2 comments
#7 - Minor bug in arbitrary bsg implementation.
Issue -
State: closed - Opened by jtpoirier over 7 years ago
- 2 comments
#6 - hg38 support
Issue -
State: closed - Opened by LeonardJ09 over 7 years ago
- 2 comments
#5 - Thank You Rachel
Issue -
State: closed - Opened by blecuacp almost 8 years ago
#4 - Weights assigned to each signature do not always add up to 1
Issue -
State: closed - Opened by blecuacp almost 8 years ago
- 1 comment
#3 - Adding parameter 'bsg' to make code accessible to earlier genome builds
Pull Request -
State: closed - Opened by emm13 almost 8 years ago
- 4 comments
#2 - normalization question for whole exome sequencing data
Issue -
State: closed - Opened by YingYa over 8 years ago
- 13 comments
#1 - normalization question for whole genome
Issue -
State: closed - Opened by lpantano over 8 years ago
- 2 comments