Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / pybel/pybel-tools issues and pull requests

#145 - module 'pybel_tools' has no attribute 'summary'

Issue - State: open - Opened by Ahmed-fub over 2 years ago

#144 - pybel-tools should have a new documentation?

Issue - State: open - Opened by choooze about 4 years ago

#143 - Update for PyBEL 15

Pull Request - State: closed - Opened by cthoyt over 4 years ago

#142 - Add curation tools

Pull Request - State: open - Opened by cthoyt over 4 years ago

#141 - PyBEL 14.9 update

Pull Request - State: closed - Opened by cthoyt over 4 years ago

#140 - Add chemical similarity calculator

Issue - State: closed - Opened by cthoyt about 5 years ago

#139 - HTML assembler can't find index.html

Issue - State: open - Opened by cthoyt over 5 years ago
Labels: bug

#138 - Add reified edge assembler

Pull Request - State: closed - Opened by cthoyt over 5 years ago

#137 - Collapse nodes with the same name (doesnt matter to which one)

Issue - State: closed - Opened by ddomingof over 5 years ago - 2 comments

#136 - Implement assembler with reified edges

Issue - State: closed - Opened by cthoyt over 5 years ago - 1 comment

#135 - Fix SPIA script

Issue - State: closed - Opened by cthoyt almost 6 years ago

#134 - Add ideogram assembler

Pull Request - State: closed - Opened by cthoyt almost 6 years ago

#133 - Update to PyBEL v0.13

Pull Request - State: closed - Opened by cthoyt almost 6 years ago

#132 - Validator with sitemapper

Issue - State: open - Opened by cthoyt almost 6 years ago

#131 - Spia

Pull Request - State: closed - Opened by ddomingof about 6 years ago - 2 comments

#130 - Update to PyBEL 0.12.0

Pull Request - State: closed - Opened by cthoyt about 6 years ago

#129 - Re-organize generate mechanism code

Pull Request - State: closed - Opened by cthoyt over 6 years ago

#128 - Update for PyBEL 11.9

Pull Request - State: closed - Opened by cthoyt over 6 years ago

#127 - Upstream controller recursive implementation

Issue - State: open - Opened by ddomingof over 6 years ago - 1 comment
Labels: easy

#126 - Update code to work with new PyBEL

Pull Request - State: closed - Opened by cthoyt over 6 years ago

#125 - Direct Interaction Validator

Issue - State: open - Opened by cthoyt over 6 years ago

#124 - HGVS Validator

Issue - State: open - Opened by cthoyt over 6 years ago
Labels: low priority

#123 - Edge summary double counts two way edges

Issue - State: open - Opened by cthoyt over 6 years ago

#122 - Cache intermediate NeuroMMSig results

Issue - State: open - Opened by cthoyt over 6 years ago
Labels: enhancement, NeuroMMSig

#120 - Implement pseudo-topological sort

Issue - State: open - Opened by cthoyt over 6 years ago

#119 - Export a BELGraph to SCAIView format

Issue - State: open - Opened by cthoyt almost 7 years ago - 2 comments

#118 - Auto class expansion

Issue - State: closed - Opened by cthoyt almost 7 years ago - 1 comment

#117 - Testing on OLSNamespace

Issue - State: closed - Opened by cthoyt about 7 years ago - 1 comment

#116 - Implement degree-preserving network shuffle

Issue - State: open - Opened by cthoyt about 7 years ago - 3 comments
Labels: low priority

#115 - Better citation tests

Issue - State: closed - Opened by cthoyt about 7 years ago

#114 - Semantic hash of BEL script

Issue - State: closed - Opened by cthoyt over 7 years ago

#113 - Only infer central dogma on HGNC

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: bug

#112 - Random sample of graph by node induction

Issue - State: closed - Opened by cthoyt over 7 years ago

#111 - Random subsample of graph by edges

Issue - State: closed - Opened by cthoyt over 7 years ago

#110 - Network concordance algorithm

Issue - State: closed - Opened by cthoyt over 7 years ago

#109 - Cache citations when enriching

Issue - State: closed - Opened by cthoyt over 7 years ago

#108 - Check semantic hash of BELNS before deploying to Arti

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: enhancement

#107 - Calculate semantic hash of BELNS

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: enhancement

#106 - Inference over families

Issue - State: closed - Opened by cthoyt over 7 years ago - 1 comment

#105 - BEL Rewriter for PubMed Citations

Issue - State: closed - Opened by cthoyt over 7 years ago

#104 - BEL Rewriter for namespaces

Issue - State: open - Opened by cthoyt over 7 years ago

#103 - Document deployment to artifactory

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: documentation

#102 - Metapath search

Issue - State: open - Opened by cthoyt over 7 years ago

#101 - Metapath extraction

Issue - State: open - Opened by cthoyt over 7 years ago

#100 - Added isolate biggest component

Issue - State: closed - Opened by ddomingof over 7 years ago - 1 comment

#99 - Network seeding by name

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: medium priority, easy

#98 - Add admin output for naked names as namespace

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: enhancement, web

#97 - Include other info in summary page

Issue - State: closed - Opened by ddomingof over 7 years ago

#96 - GraphQL API Endpoint

Issue - State: closed - Opened by cthoyt over 7 years ago - 1 comment
Labels: enhancement, web

#95 - CSV exporter not working

Issue - State: closed - Opened by ddomingof over 7 years ago

#94 - API endpoint for list of non-argument functions in Pipeline

Issue - State: closed - Opened by cthoyt over 7 years ago - 1 comment

#93 - Make cmpa asynchronous

Issue - State: closed - Opened by cthoyt over 7 years ago - 1 comment
Labels: enhancement, web

#92 - Add warnings to summary when diseases are taken as subjects of causal relations

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: enhancement, web

#91 - Add collapse to annotations tree navigation

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: web

#90 - Multiple Edges Visualization

Issue - State: closed - Opened by cthoyt over 7 years ago - 1 comment
Labels: web

#89 - Add node and edge count to network list

Issue - State: closed - Opened by cthoyt over 7 years ago - 1 comment
Labels: web

#88 - Node annotator for GO

Issue - State: closed - Opened by cthoyt over 7 years ago

#87 - Find protein families that don't have any members annotated to them

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: enhancement

#86 - Video how to use query builder

Issue - State: closed - Opened by ddomingof over 7 years ago - 1 comment

#85 - Framework for description annotations

Issue - State: closed - Opened by cthoyt over 7 years ago

#84 - Add swagger endpoint

Issue - State: closed - Opened by cthoyt over 7 years ago - 1 comment
Labels: web

#83 - Switch over to blueprints

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: web

#82 - Change information table in explorer to definition list

Issue - State: closed - Opened by cthoyt over 7 years ago - 3 comments
Labels: enhancement, web

#81 - Add table of contents to network summary page

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: enhancement, medium priority, easy, web

#80 - Add description property to gene nodes

Issue - State: closed - Opened by ddomingof over 7 years ago

#79 - Generate human-readable documentation for Javascript

Issue - State: closed - Opened by cthoyt over 7 years ago - 8 comments
Labels: documentation

#78 - Get all reports from last 2 weeks

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: enhancement

#77 - Deploy dockerfile to Artifactory

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: web

#76 - BEL Template Generation for Genes

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: enhancement

#75 - Rights Management - take 1

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: enhancement

#74 - Network list doesn't work for anonymous user

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: bug

#73 - Path Ranking Function

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: enhancement

#72 - Network Overlap Page

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: enhancement, medium priority, medium

#71 - Cascades on reporting and analyses

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: web

#70 - Boilerplate generator

Issue - State: closed - Opened by cthoyt over 7 years ago

#69 - Check for defined annotations that aren't used

Issue - State: closed - Opened by cthoyt over 7 years ago

#68 - Unparse authors before outputting BEL

Issue - State: closed - Opened by cthoyt over 7 years ago

#67 - Close modal after data loaded from algorithm

Issue - State: closed - Opened by cthoyt over 7 years ago - 2 comments

#66 - Analyze change in errors through version bumps

Issue - State: closed - Opened by cthoyt over 7 years ago - 1 comment

#65 - User authentication

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: web

#64 - logging of uploaders

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: web

#63 - Versions page for each network

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: web

#62 - Only show most recent version of each network on home screen

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: web

#60 - Add KDE of distribution to analysis results page

Issue - State: closed - Opened by cthoyt over 7 years ago - 1 comment
Labels: enhancement, web

#59 - Rename all NPA references to CMPA

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: documentation

#55 - Problem with Selec2 selectbox

Issue - State: closed - Opened by ddomingof over 7 years ago - 2 comments
Labels: web

#54 - Additional network summary ideas

Issue - State: closed - Opened by cthoyt over 7 years ago - 1 comment
Labels: web

#53 - Global exclude options

Issue - State: closed - Opened by cthoyt over 7 years ago - 1 comment
Labels: wontfix

#50 - Merge DatabaseService with CacheManager

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: question, low priority, easy

#46 - Testing of mutation functions

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: high priority, testing

#45 - Testing of summary functions

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: high priority, testing

#43 - Merge database API endpoints using params

Issue - State: closed - Opened by cthoyt over 7 years ago

#33 - Reimplement NeuroMMSig Topological Analysis

Issue - State: closed - Opened by cthoyt over 7 years ago - 1 comment
Labels: low priority

#29 - Merge all node variants by value

Issue - State: closed - Opened by ddomingof over 7 years ago - 1 comment
Labels: low priority

#26 - Implement OpenBEL API nanopub uploader

Issue - State: closed - Opened by cthoyt over 7 years ago
Labels: high priority, medium

#11 - Map service to swagger.json with Connexion

Issue - State: closed - Opened by cthoyt almost 8 years ago
Labels: wontfix, low priority, hard

#6 - BEL to Natural Language

Issue - State: closed - Opened by cthoyt almost 8 years ago - 1 comment
Labels: wontfix, low priority