Ecosyste.ms: Issues

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GitHub / pnnl/hundo issues and pull requests

#23 - low priority, replace bbduk2.sh with bbduk.sh

Issue - State: open - Opened by colinbrislawn almost 5 years ago - 1 comment

#22 - update blast so modern libssl is supported

Issue - State: closed - Opened by colinbrislawn about 5 years ago - 3 comments

#21 - make ASVs to close #18

Pull Request - State: open - Opened by colinbrislawn over 5 years ago - 15 comments

#20 - AssertionError: 3 columns passed, passed data had 47 columns

Issue - State: closed - Opened by gabyrech over 5 years ago - 2 comments

#19 - Stuck at "Downloading remote packages"

Issue - State: closed - Opened by gabyrech almost 6 years ago - 4 comments

#18 - make ASVs using --cluster_unoise

Issue - State: open - Opened by colinbrislawn almost 6 years ago - 6 comments

#17 - `hundo download` is broken

Issue - State: closed - Opened by mslarae13 almost 6 years ago

#16 - incomplete blastn results used during restarted job

Issue - State: closed - Opened by colinbrislawn about 6 years ago - 5 comments

#15 - Updates report

Pull Request - State: closed - Opened by brwnj about 6 years ago

#14 - Adds MAFFT; updates report format and output

Pull Request - State: closed - Opened by brwnj over 6 years ago

#13 - Nicki working

Pull Request - State: closed - Opened by nzavoshy over 6 years ago - 2 comments

#12 - use FastTreeMP

Pull Request - State: closed - Opened by colinbrislawn over 6 years ago

#11 - Consider compressing inlined files

Issue - State: closed - Opened by colinbrislawn over 6 years ago - 1 comment

#10 - Consider performing taxonomy search using vsearch

Issue - State: closed - Opened by colinbrislawn over 6 years ago - 1 comment

#9 - Consider performing MSA using MAFFT

Issue - State: closed - Opened by colinbrislawn over 6 years ago - 1 comment

#8 - Minor update to docs

Pull Request - State: closed - Opened by colinbrislawn over 6 years ago

#7 - Improve concurrency in initial sample processing

Issue - State: closed - Opened by colinbrislawn over 6 years ago - 5 comments

#6 - Concatenation fails with many files

Issue - State: closed - Opened by brwnj over 6 years ago

#5 - report downloads

Issue - State: closed - Opened by brwnj almost 7 years ago - 3 comments
Labels: enhancement

#4 - Merge pairs

Pull Request - State: closed - Opened by brwnj almost 7 years ago

#3 - Updates to all open source dependencies

Pull Request - State: closed - Opened by brwnj almost 7 years ago

#2 - Consider adding vsearch --fastq_eestats

Issue - State: closed - Opened by colinbrislawn about 7 years ago - 9 comments

#1 - Implement --use-conda

Pull Request - State: closed - Opened by colinbrislawn over 7 years ago