Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / phenopackets/phenopacket-schema issues and pull requests

#392 - Bump com.google.protobuf:protobuf-java from 3.20.3 to 3.25.5

Pull Request - State: open - Opened by dependabot[bot] about 2 months ago
Labels: dependencies, java

#391 - Is "Sex" correctly labelled in the Pedigree example and Sex documentation

Issue - State: open - Opened by slaurie about 2 months ago - 3 comments

#390 - Relax protobuf dependencies further in python package

Issue - State: open - Opened by holtgrewe about 2 months ago - 1 comment

#389 - Bump certifi from 2024.2.2 to 2024.7.4 in /docs

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies, python

#388 - Bump jinja2 from 3.1.3 to 3.1.4 in /docs

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies, python

#387 - Bump urllib3 from 2.2.1 to 2.2.2 in /docs

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies, python

#386 - Bump requests from 2.31.0 to 2.32.2 in /docs

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies, python

#385 - Fixing several small documentation bugs

Pull Request - State: closed - Opened by ielis 7 months ago - 3 comments

#384 - Include the generated files into Python library

Pull Request - State: closed - Opened by ielis 7 months ago - 15 comments

#383 - Sync docs of procedure with protobuf

Pull Request - State: open - Opened by cmungall 7 months ago - 2 comments

#381 - Update cardinalities in procedure.rst #346

Pull Request - State: closed - Opened by cmungall 7 months ago - 2 comments

#380 - omit mention of frequency in phenotype.rst

Pull Request - State: closed - Opened by cmungall 9 months ago

#379 - Claim ownership of FAIRsharing record on Phenopackets

Issue - State: open - Opened by nlharris 10 months ago - 2 comments

#378 - Update FHIR page

Issue - State: open - Opened by pnrobinson 12 months ago - 1 comment

#377 - basic.html page lacks some important info

Issue - State: open - Opened by nlharris about 1 year ago

#376 - relaxing versioning of protobuf

Pull Request - State: closed - Opened by iimpulse about 1 year ago

#375 - please relax protobuf dependency in setup.py

Issue - State: closed - Opened by holtgrewe over 1 year ago - 5 comments

#374 - Python phenopackets.AffectedStatus missing?

Issue - State: closed - Opened by holtgrewe over 1 year ago - 2 comments

#373 - Is meta_data always required?

Issue - State: closed - Opened by holtgrewe over 1 year ago - 2 comments

#372 - Update measurement.rst example

Pull Request - State: closed - Opened by mbaudis over 1 year ago - 2 comments

#371 - The cardinality of `Resource`s may be too strict

Issue - State: closed - Opened by ielis over 1 year ago - 11 comments

#370 - Example for use of SNOMED

Issue - State: open - Opened by andrewpatto over 1 year ago

#369 - Convert README.rst into markdown for crates.io release

Issue - State: closed - Opened by julesjacobsen over 1 year ago - 1 comment

#368 - Update protoc generation pipeline

Issue - State: open - Opened by iimpulse over 1 year ago - 12 comments

#367 - Bump jackson-databind from 2.13.4.1 to 2.13.4.2

Pull Request - State: closed - Opened by dependabot[bot] over 1 year ago - 1 comment
Labels: dependencies, java

#366 - missing links

Issue - State: closed - Opened by abearab over 1 year ago

#365 - Fixing broken link for the FHIR IG in RTD :bug:

Pull Request - State: open - Opened by lindsmith over 1 year ago
Labels: bug, documentation

#364 - Pedigree

Pull Request - State: open - Opened by julesjacobsen almost 2 years ago - 3 comments

#363 - Can we add new variables or values to the phenopacket building blocks?

Issue - State: closed - Opened by MarioCazalla almost 2 years ago - 4 comments

#362 - Pedigree

Pull Request - State: closed - Opened by pnrobinson almost 2 years ago - 1 comment

#361 - Remove old presentations from phenopackets.org splash page

Issue - State: open - Opened by cmungall almost 2 years ago

#360 - Clarify how can applications tell which top level element is intended

Issue - State: open - Opened by cmungall almost 2 years ago - 5 comments

#359 - What library should R developers use for phenopackets?

Issue - State: open - Opened by cmungall almost 2 years ago - 5 comments

#358 - Document mapping of snake_case to lowerCamelCase when validating json

Issue - State: open - Opened by pnrobinson about 2 years ago - 1 comment

#357 - Bump jackson-databind from 2.13.3 to 2.13.4.1

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies, java

#356 - Bump protobuf from 3.20.1 to 3.20.2

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies, python

#355 - updating for py2.02

Pull Request - State: closed - Opened by iimpulse about 2 years ago - 4 comments

#354 - Bump protobuf-java from 3.20.1 to 3.20.3

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies, java

#353 - BUGs in README example

Issue - State: closed - Opened by stormliucong about 2 years ago

#352 - Bump protobuf from 3.15.0 to 3.18.3

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago - 1 comment
Labels: dependencies, python

#351 - Bug in documentation for VariantInterpretation

Issue - State: closed - Opened by ielis about 2 years ago

#350 - Bug in documentation for `Family`

Issue - State: closed - Opened by ielis about 2 years ago

#349 - Bug in documentation for Measurement

Issue - State: closed - Opened by pnrobinson about 2 years ago
Labels: bug

#348 - Best practice for passing images with Phenopacket

Issue - State: open - Opened by dnil about 2 years ago - 6 comments

#347 - MedicalAction action field in doc could be changed to a more detailed field

Issue - State: open - Opened by belkassaby about 2 years ago - 2 comments

#346 - Bug in documentation for Procedure | BodySite, performedOn

Issue - State: closed - Opened by belkassaby about 2 years ago

#345 - Fix URL typo for LOINC

Pull Request - State: closed - Opened by cmungall about 2 years ago

#344 - Bug in documentation for MedicalAction | TherapeuticRegimen

Issue - State: closed - Opened by ielis over 2 years ago - 1 comment

#343 - One-sided `ReferenceRange`

Issue - State: open - Opened by ielis over 2 years ago - 3 comments

#341 - [Request] Dietary Intervention (NCIT:C15447)

Issue - State: open - Opened by M-casado over 2 years ago

#340 - [documentation] serializing numbers as string

Issue - State: open - Opened by pnrobinson over 2 years ago

#337 - [Question] How to map the panel name into phenopacket?

Issue - State: open - Opened by A-Tsai over 2 years ago

#336 - Add `module-info.java` file

Pull Request - State: closed - Opened by ielis over 2 years ago - 3 comments

#335 - Bump jackson-databind from 2.9.10.7 to 2.12.6.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#334 - MoleculeContext

Issue - State: open - Opened by pnrobinson over 2 years ago

#333 - Implement GA4GH Pedigree model

Issue - State: open - Opened by julesjacobsen over 2 years ago - 10 comments
Labels: enhancement

#332 - Possible to get the json examples for RD & cancer?

Issue - State: closed - Opened by peupeubangbang over 2 years ago - 2 comments

#331 - Bump protobuf-java from 3.14.0 to 3.16.1

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#330 - Parental consanguinity

Issue - State: open - Opened by pnrobinson almost 3 years ago

#329 - Bump jackson-databind from 2.9.10.7 to 2.9.10.8

Pull Request - State: closed - Opened by dependabot[bot] almost 3 years ago - 1 comment
Labels: dependencies

#328 - fixing v2 documentation

Pull Request - State: closed - Opened by pnrobinson about 3 years ago - 1 comment

#327 - Maven build fails

Issue - State: closed - Opened by ielis about 3 years ago - 1 comment

#326 - Add gender to documentation for individual

Issue - State: closed - Opened by pnrobinson about 3 years ago - 2 comments
Labels: documentation

#325 - Avoid term 'germline sample' outside the context of cancer

Issue - State: open - Opened by azankl about 3 years ago

#323 - Changes to AffectedStatus in Pedigree Element

Issue - State: open - Opened by azankl about 3 years ago

#322 - Allow use of identifiers in creator provenance metadata

Issue - State: open - Opened by micheldumontier about 3 years ago - 1 comment

#321 - Missing PED file example in Pedigree Element Documentation

Issue - State: open - Opened by azankl about 3 years ago

#320 - minor rewording in phenopacket.rst

Pull Request - State: closed - Opened by azankl about 3 years ago - 1 comment

#319 - trouble running protobuf-jsonschema with v2 paths

Issue - State: open - Opened by cmungall about 3 years ago - 2 comments

#318 - Check examples for validitty

Issue - State: open - Opened by pnrobinson about 3 years ago - 1 comment
Labels: bug, documentation

#317 - Rev Python implementation to v2

Issue - State: open - Opened by iimpulse about 3 years ago - 1 comment

#316 - link to protobuf 3 incorrect / not available

Issue - State: closed - Opened by micheldumontier about 3 years ago

#315 - Update variant.rst

Pull Request - State: closed - Opened by ahwagner about 3 years ago

#314 - Fix broken link to fhir

Pull Request - State: closed - Opened by cmungall about 3 years ago

#313 - run a link checker over docs

Issue - State: open - Opened by cmungall about 3 years ago

#312 - Create README.rst

Pull Request - State: closed - Opened by cmungall over 3 years ago

#311 - link to docs in README broken

Issue - State: closed - Opened by cmungall over 3 years ago

#310 - Update README.rst for broken documentation link

Pull Request - State: closed - Opened by mbaudis over 3 years ago - 1 comment

#309 - update documentation about requirement levels

Pull Request - State: closed - Opened by pnrobinson over 3 years ago

#308 - Update submodule to vrs-protobuf

Pull Request - State: closed - Opened by ahwagner over 3 years ago - 2 comments

#307 - HtsFile replacement

Issue - State: open - Opened by julesjacobsen over 3 years ago - 14 comments

#306 - Documentation, inconsistencies in TNM use

Issue - State: open - Opened by mbaudis over 3 years ago

#305 - OntologyClass for ICD-O?

Issue - State: open - Opened by mbaudis over 3 years ago - 8 comments

#304 - Treatment - HormoneTherapyTreatment, ChemoTherapyTreatment

Issue - State: closed - Opened by julesjacobsen over 3 years ago - 2 comments

#303 - RadiationTherapy

Issue - State: closed - Opened by pnrobinson over 3 years ago - 1 comment

#302 - Add VRSATILE background and update blurbs

Pull Request - State: closed - Opened by ahwagner over 3 years ago - 1 comment

#301 - Create 2.0.0-RC1 tag and build

Issue - State: closed - Opened by julesjacobsen over 3 years ago

#300 - Update VariantDescriptor and GeneDescriptor pages

Issue - State: closed - Opened by julesjacobsen over 3 years ago - 1 comment

#299 - Update Interpretation for a newly vrsatile world

Issue - State: closed - Opened by julesjacobsen over 3 years ago
Labels: documentation

#298 - Update UML blobs for VRS integration

Issue - State: closed - Opened by julesjacobsen over 3 years ago
Labels: documentation

#297 - Investigate cumulative fractions

Issue - State: open - Opened by jmcmurry over 3 years ago - 1 comment

#296 - Update examples in docs

Issue - State: closed - Opened by julesjacobsen over 3 years ago
Labels: documentation

#295 - Update ontologies.rst

Pull Request - State: closed - Opened by mellybelly over 3 years ago

#294 - Update disease.rst

Pull Request - State: closed - Opened by mellybelly over 3 years ago - 1 comment

#293 - Update disease.rst

Pull Request - State: closed - Opened by mellybelly over 3 years ago - 2 comments