Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / onecodex/finch-rs issues and pull requests

#70 - Fix newlines in sketch kmers

Pull Request - State: closed - Opened by audy about 1 year ago

#69 - Increase capnproto size

Pull Request - State: open - Opened by audy about 1 year ago

#68 - bottom-k implementation

Issue - State: closed - Opened by jianshu93 about 1 year ago - 2 comments

#67 - Fix for Dockerfile smell DL3025

Pull Request - State: closed - Opened by grosa1 almost 2 years ago - 1 comment

#66 - Next version

Pull Request - State: closed - Opened by Keats almost 2 years ago

#65 - Fix bug with reverse complement not being normalized.

Pull Request - State: open - Opened by donovan-h-parks about 2 years ago

#64 - Avoid creating an array for histogram

Pull Request - State: closed - Opened by Keats about 2 years ago

#62 - Make numpy an optional dependency

Pull Request - State: closed - Opened by jairideout about 2 years ago

#61 - Borrow sequence records

Pull Request - State: closed - Opened by Keats about 2 years ago

#60 - Bump lib version to 0.4.3

Pull Request - State: closed - Opened by jairideout over 2 years ago

#59 - Add no_strict parameter to Python bindings

Pull Request - State: closed - Opened by jairideout over 2 years ago

#58 - Bump finch_cli to 0.4.1

Pull Request - State: closed - Opened by jairideout over 2 years ago

#57 - Bump library to 0.4.2

Pull Request - State: closed - Opened by jairideout over 2 years ago

#56 - Bump dependencies

Pull Request - State: closed - Opened by jairideout over 2 years ago

#55 - Bump crossbeam-utils from 0.8.1 to 0.8.8

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 1 comment
Labels: dependencies

#54 - Bump crossbeam-deque from 0.8.0 to 0.8.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#53 - support for aminio acid proteome

Issue - State: open - Opened by jianshu93 over 3 years ago

#52 - Separate CLI and lib

Pull Request - State: closed - Opened by Keats about 4 years ago - 4 comments

#51 - Cleanup + update

Pull Request - State: closed - Opened by Keats about 4 years ago

#50 - Add license scan report and status

Pull Request - State: closed - Opened by fossabot about 4 years ago - 1 comment

#49 - Build binary wheels for Python 3.8 and 3.9 on release

Issue - State: open - Opened by boydgreenfield over 4 years ago

#49 - Build binary wheels for Python 3.8 and 3.9 on release

Issue - State: open - Opened by boydgreenfield over 4 years ago

#48 - split finch-rs into library and binary

Issue - State: closed - Opened by maxbla over 4 years ago

#47 - Make raw_distance function commutative

Pull Request - State: closed - Opened by maxbla over 4 years ago - 7 comments

#46 - Remove rust-toolchain and mess with CI

Pull Request - State: closed - Opened by maxbla over 4 years ago - 1 comment

#46 - Remove rust-toolchain and mess with CI

Pull Request - State: closed - Opened by maxbla over 4 years ago - 1 comment

#45 - Transitive dependency memoffset won't build on old nightly

Issue - State: closed - Opened by maxbla over 4 years ago - 1 comment

#45 - Transitive dependency memoffset won't build on old nightly

Issue - State: closed - Opened by maxbla over 4 years ago - 1 comment

#44 - circleci -> gh actions

Pull Request - State: closed - Opened by Keats almost 5 years ago

#44 - circleci -> gh actions

Pull Request - State: closed - Opened by Keats almost 5 years ago

#43 - Tree command

Issue - State: open - Opened by bovee about 5 years ago - 1 comment

#43 - Tree command

Issue - State: open - Opened by bovee about 5 years ago - 1 comment

#42 - Add Dockerfile to build Finch binary

Pull Request - State: closed - Opened by polyatail about 5 years ago

#42 - Add Dockerfile to build Finch binary

Pull Request - State: closed - Opened by polyatail about 5 years ago

#41 - Better distances using counts

Issue - State: open - Opened by bovee about 5 years ago - 1 comment

#40 - Generate python documentation

Issue - State: open - Opened by bovee about 5 years ago

#40 - Generate python documentation

Issue - State: open - Opened by bovee about 5 years ago

#39 - Build python library/wheels

Issue - State: closed - Opened by bovee over 5 years ago - 1 comment

#38 - Enable code coverage tracking

Issue - State: open - Opened by bovee over 5 years ago

#37 - multi-threaded mash_files

Issue - State: closed - Opened by wwood over 5 years ago - 7 comments

#37 - multi-threaded mash_files

Issue - State: closed - Opened by wwood over 5 years ago - 7 comments

#36 - [WIP] Expose scaled minhash in the CLI

Pull Request - State: closed - Opened by luizirber over 5 years ago - 1 comment

#36 - [WIP] Expose scaled minhash in the CLI

Pull Request - State: closed - Opened by luizirber over 5 years ago - 1 comment

#35 - [WIP] Hash schemes

Pull Request - State: closed - Opened by bovee over 5 years ago

#35 - [WIP] Hash schemes

Pull Request - State: closed - Opened by bovee over 5 years ago

#34 - Update circle CI to 2.0 config

Pull Request - State: closed - Opened by luizirber over 5 years ago

#33 - Add Finch to AFproject.org

Issue - State: open - Opened by boasvdp over 5 years ago - 1 comment

#32 - Optimize loading sketch file

Pull Request - State: closed - Opened by dtolnay over 5 years ago - 2 comments

#31 - Attempting Excessive Memory Allocation

Issue - State: closed - Opened by dcdanko over 5 years ago - 9 comments

#30 - Version 0.2.0

Pull Request - State: closed - Opened by bovee almost 6 years ago

#29 - Improve filtering API

Issue - State: open - Opened by bovee almost 6 years ago

#29 - Improve filtering API

Issue - State: open - Opened by bovee almost 6 years ago

#28 - dist takes parameters that are silently ignored when passed sketch files

Issue - State: closed - Opened by hgbrian almost 6 years ago - 2 comments

#26 - Other Hash Functions

Issue - State: open - Opened by bovee over 6 years ago - 9 comments

#26 - Other Hash Functions

Issue - State: open - Opened by bovee over 6 years ago - 9 comments

#25 - Error when kmer count >65535 (per kmer)

Issue - State: closed - Opened by bovee over 6 years ago - 2 comments

#24 - `finch` query/reference selection is confusing

Issue - State: closed - Opened by bovee over 6 years ago - 1 comment

#23 - Internal refactoring and support for binary Mash format

Pull Request - State: closed - Opened by bovee over 6 years ago

#23 - Internal refactoring and support for binary Mash format

Pull Request - State: closed - Opened by bovee over 6 years ago

#22 - Now in brew

Issue - State: closed - Opened by tseemann almost 7 years ago - 1 comment

#22 - Now in brew

Issue - State: closed - Opened by tseemann almost 7 years ago - 1 comment

#21 - Compatibility with Mash `msh` format

Issue - State: closed - Opened by bovee almost 7 years ago
Labels: enhancement

#21 - Compatibility with Mash `msh` format

Issue - State: closed - Opened by bovee almost 7 years ago
Labels: enhancement

#20 - What does filtering entail(--no-filter flag)?

Issue - State: closed - Opened by DoreenM almost 7 years ago - 2 comments

#20 - What does filtering entail(--no-filter flag)?

Issue - State: closed - Opened by DoreenM almost 7 years ago - 2 comments

#19 - FASTQ quality trimming

Issue - State: open - Opened by bovee almost 7 years ago - 1 comment

#19 - FASTQ quality trimming

Issue - State: open - Opened by bovee almost 7 years ago - 1 comment

#18 - Feature: Add a `screen` command

Issue - State: open - Opened by boydgreenfield almost 7 years ago

#18 - Feature: Add a `screen` command

Issue - State: open - Opened by boydgreenfield almost 7 years ago

#17 - Better build processes for releases

Issue - State: open - Opened by bovee almost 7 years ago - 1 comment
Labels: DevOps

#17 - Better build processes for releases

Issue - State: open - Opened by bovee almost 7 years ago - 1 comment
Labels: DevOps

#16 - Updates to address remaining reviewer comments

Pull Request - State: closed - Opened by bovee about 7 years ago

#15 - Save sketches for non-sketch commands automatically

Issue - State: open - Opened by bovee about 7 years ago
Labels: discussion, design

#15 - Save sketches for non-sketch commands automatically

Issue - State: open - Opened by bovee about 7 years ago
Labels: discussion, design

#14 - Fixes for JOSS review

Pull Request - State: closed - Opened by bovee about 7 years ago

#14 - Fixes for JOSS review

Pull Request - State: closed - Opened by bovee about 7 years ago

#13 - RefSeq comparisons are slow

Issue - State: closed - Opened by bovee about 7 years ago - 2 comments

#13 - RefSeq comparisons are slow

Issue - State: closed - Opened by bovee about 7 years ago - 2 comments

#12 - JOSS paper

Issue - State: closed - Opened by HadrienG about 7 years ago - 1 comment

#11 - Documentation

Issue - State: closed - Opened by HadrienG about 7 years ago - 4 comments

#10 - finch dist fails on non-suffixed sketches

Issue - State: open - Opened by HadrienG about 7 years ago - 1 comment

#10 - finch dist fails on non-suffixed sketches

Issue - State: open - Opened by HadrienG about 7 years ago - 1 comment

#9 - Linux executable

Issue - State: closed - Opened by HadrienG about 7 years ago - 1 comment

#8 - Improve error messaging when `err_filter` is 100%

Issue - State: closed - Opened by bovee over 7 years ago
Labels: chore, easy

#8 - Improve error messaging when `err_filter` is 100%

Issue - State: closed - Opened by bovee over 7 years ago
Labels: chore, easy

#7 - `numValidKmers` in sketch

Issue - State: closed - Opened by bovee over 7 years ago

#6 - Use `error-chain`?

Issue - State: closed - Opened by bovee over 7 years ago - 2 comments
Labels: discussion

#6 - Use `error-chain`?

Issue - State: closed - Opened by bovee over 7 years ago - 2 comments
Labels: discussion

#5 - retcode is 0 when finch exits in error

Issue - State: closed - Opened by audy over 7 years ago - 2 comments
Labels: bug

#4 - clarify types for rust/pull/44287

Pull Request - State: closed - Opened by Eh2406 over 7 years ago - 1 comment

#3 - Submit to JOSS

Issue - State: closed - Opened by bovee almost 8 years ago - 4 comments
Labels: external

#2 - Exits with "thread 'main' has overflowed its stack" on empty files

Issue - State: closed - Opened by bovee almost 8 years ago - 1 comment

#2 - Exits with "thread 'main' has overflowed its stack" on empty files

Issue - State: closed - Opened by bovee almost 8 years ago - 1 comment

#1 - Non-canonical kmers

Issue - State: closed - Opened by bovee almost 8 years ago - 1 comment