Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / obophenotype/zebrafish-phenotype-ontology issues and pull requests

#66 - Add documentation pages to ZP

Pull Request - State: closed - Opened by matentzn 10 months ago

#65 - Release January 2024

Pull Request - State: closed - Opened by matentzn 10 months ago

#64 - GO deprecated various histone terms

Issue - State: open - Opened by matentzn 10 months ago

#63 - Remove single CARO dependency from ZFIN annotations?

Issue - State: open - Opened by matentzn 10 months ago

#62 - Remove one "0" from ZP:Phenotype

Pull Request - State: closed - Opened by matentzn 10 months ago - 1 comment

#60 - Missing GO terms?

Issue - State: closed - Opened by matentzn 12 months ago - 2 comments

#58 - Update ZP to ODK 14

Pull Request - State: closed - Opened by matentzn over 1 year ago

#57 - Retiring the NBO Phenotype branch

Issue - State: closed - Opened by DitchingIt over 1 year ago - 2 comments

#56 - AHHHHHHnsats.

Issue - State: open - Opened by matentzn almost 2 years ago - 2 comments

#54 - ZP December release

Issue - State: open - Opened by matentzn almost 2 years ago

#53 - ZP:0019257 - "obsolete mitotic chromosome decondensation premature, abnormal"

Issue - State: closed - Opened by matentzn almost 2 years ago - 6 comments

#52 - ZP:0101932 - "obsolete nucleosome positioning process quality, abnormal"

Issue - State: closed - Opened by matentzn almost 2 years ago - 4 comments

#50 - Handle obsolete fillers in ZP (December 2022)

Issue - State: open - Opened by matentzn almost 2 years ago - 2 comments

#49 - Integration with NBO

Issue - State: closed - Opened by DitchingIt almost 2 years ago - 3 comments

#48 - ZFIN migration to pre-composed ZP curation?

Issue - State: open - Opened by matentzn over 2 years ago

#47 - ZP release 12.12.2021

Pull Request - State: closed - Opened by matentzn almost 3 years ago

#46 - ZP:0008499 and ZP:0000998 have the same label

Issue - State: open - Opened by matentzn almost 3 years ago - 1 comment

#45 - Odd ZFA term in data (ZFA:0005943)

Issue - State: open - Opened by matentzn almost 3 years ago

#44 - Uses of obsolete GO and ZFA terms

Issue - State: closed - Opened by matentzn almost 3 years ago - 1 comment

#43 - Add obofoundry topic to repo metadata

Issue - State: closed - Opened by cthoyt over 3 years ago - 1 comment

#42 - Some changes I need to check

Pull Request - State: open - Opened by matentzn over 4 years ago

#41 - Gather example(s) for electrophysiology terms

Issue - State: open - Opened by matentzn over 4 years ago

#40 - Build

Pull Request - State: closed - Opened by matentzn over 4 years ago

#39 - Update README.md

Pull Request - State: closed - Opened by drseb almost 5 years ago

#38 - Normal phenotypes

Pull Request - State: closed - Opened by matentzn almost 5 years ago

#36 - unsatisfiable classes when merged into vertebrate.owl

Issue - State: open - Opened by RLWOHIO almost 5 years ago - 13 comments
Labels: bug

#35 - Test whether an obsoleted class gets re-introduced into ZP, so the obsoletion can be revoked

Issue - State: open - Opened by matentzn almost 5 years ago
Labels: enhancement

#34 - Add abnormalBiologicalProcess back to external.txt

Issue - State: closed - Opened by matentzn almost 5 years ago - 1 comment
Labels: bug

#33 - ZFIN uses obsolete GO:0044424 and GO:0044420

Issue - State: open - Opened by matentzn almost 5 years ago - 2 comments
Labels: bug

#32 - PATO:quality used instead of PATO:process quality in conjunction with GO process or function

Issue - State: open - Opened by matentzn almost 5 years ago - 2 comments
Labels: ignore

#31 - Mass obsoletion

Issue - State: closed - Opened by matentzn almost 5 years ago - 1 comment

#30 - ZFIN sometimes uses GO:0005623 (cell) rather than ZFA. Intended?

Issue - State: closed - Opened by matentzn almost 5 years ago - 3 comments
Labels: bug

#29 - Problem with redundancy of 'part of' axioms in ZFA with ZFIN

Issue - State: open - Opened by matentzn almost 5 years ago - 2 comments
Labels: bug

#28 - Design pipeline for recording when a ZP term is replaced by new ZP term

Issue - State: open - Opened by matentzn about 5 years ago
Labels: enhancement

#27 - If a ZFIN term uses an obsolete class, this should be flagged

Issue - State: open - Opened by matentzn about 5 years ago - 2 comments
Labels: enhancement

#26 - Remove equivalent classes from ZP

Issue - State: closed - Opened by matentzn about 5 years ago

#25 - ZP:0103989 bearer currently broken

Issue - State: closed - Opened by matentzn about 5 years ago - 1 comment

#24 - ZFIN pipeline seems to be only additive

Issue - State: closed - Opened by matentzn over 5 years ago - 2 comments

#23 - Some normal phenotypes snug into ZFIN?

Issue - State: open - Opened by matentzn over 5 years ago - 3 comments
Labels: bug

#22 - Add GO phenotypes to ZP (analogous to anatomy pipeline)

Issue - State: closed - Opened by matentzn over 5 years ago - 1 comment

#21 - Improve ZP diff reports

Issue - State: open - Opened by matentzn over 5 years ago - 1 comment
Labels: enhancement

#20 - ZP classes derived from the ZFIN-EQs no longer present should be deprecated

Issue - State: closed - Opened by matentzn over 5 years ago - 1 comment

#19 - GO pipeline: Check whether we can restrict to taxon

Issue - State: closed - Opened by matentzn over 5 years ago - 1 comment

#18 - NTR abnormal tail morphology

Issue - State: closed - Opened by diatomsRcool over 5 years ago - 2 comments

#17 - NTR yolk edema

Issue - State: closed - Opened by diatomsRcool over 5 years ago - 3 comments

#16 - DO NOT MERGE YET. Remove zp.owl from the main directory

Pull Request - State: closed - Opened by matentzn over 5 years ago

#15 - a large number of ZP classes unsatisfiable

Issue - State: closed - Opened by RLWOHIO over 5 years ago - 10 comments

#14 - Add anatomy pipeline to ZP

Issue - State: closed - Opened by matentzn almost 6 years ago - 2 comments
Labels: enhancement

#13 - Unsatisfiable 'activity in anatomy' Classes (Fix ZFIN)

Issue - State: closed - Opened by matentzn almost 6 years ago - 4 comments
Labels: unsat

#12 - Unsatisfiable ZP:0103876 (Fix ZFIN)

Issue - State: closed - Opened by matentzn almost 6 years ago - 1 comment
Labels: unsat

#11 - Unsatisfiable ZP:0100801 (Fix ZFIN)

Issue - State: closed - Opened by matentzn almost 6 years ago - 1 comment
Labels: unsat

#10 - Redo idmap

Pull Request - State: closed - Opened by matentzn almost 6 years ago

#9 - Unsat ZP_0100030: (peritoneum and ('occurs in' some 'macrophage chemotaxis'))

Issue - State: closed - Opened by matentzn almost 6 years ago - 2 comments

#7 - Pipeline should fail with a meaningful message if deprecated classes are used

Issue - State: open - Opened by matentzn almost 6 years ago - 1 comment
Labels: enhancement

#6 - Terms that existed once but no longer exist should be obsoleted instead of removed

Issue - State: closed - Opened by matentzn almost 6 years ago - 2 comments

#5 - ZFIN raw data has not anticipated use of 'BSPO:0000120' (121) (in left/right side of)

Issue - State: closed - Opened by matentzn almost 6 years ago - 3 comments
Labels: bug

#4 - ZP Phenotype Class definition incomplete

Issue - State: closed - Opened by matentzn almost 6 years ago - 2 comments

#3 - 73 unsatisfiable ZP classes

Issue - State: closed - Opened by matentzn almost 6 years ago - 2 comments

#2 - Attempt at a release

Pull Request - State: closed - Opened by matentzn about 6 years ago - 1 comment

#1 - Makefile pattern

Pull Request - State: closed - Opened by matentzn about 6 years ago