nextstrain/conda-base issues and pull requests

#100 - Check installation workflow upon edit

Pull Request - State: closed - Opened by victorlin 3 months ago - 1 comment

#99 - Update macOS runners

Pull Request - State: closed - Opened by victorlin 3 months ago

#98 - Installation failure

Issue - State: closed - Opened by nextstrain-bot 3 months ago - 8 comments

#97 - CI fails for macOS with error in mamba/boa related to libsolv and bzip2

Issue - State: closed - Opened by corneliusroemer 3 months ago - 1 comment
Labels: bug

#96 - Add xlrd

Pull Request - State: closed - Opened by huddlej 4 months ago

#95 - Update GitHub runners

Issue - State: closed - Opened by tsibley 4 months ago

#94 - Provide GNU awk, grep, sed, and tar in the runtime

Pull Request - State: closed - Opened by tsibley 4 months ago

#93 - Revert to previous minimum glibc version of ≥2.17 instead of ≥2.28

Pull Request - State: closed - Opened by tsibley 5 months ago - 1 comment

#92 - Newer Linux base systems (glibc version) required

Issue - State: closed - Opened by tsibley 5 months ago - 3 comments
Labels: bug

#91 - Add the SQLite CLI for `augur merge`

Pull Request - State: closed - Opened by tsibley 5 months ago - 1 comment

#90 - Surface installation failures with GitHub issues

Pull Request - State: closed - Opened by victorlin 6 months ago

#89 - don't merge: experiment with regex in match spec

Pull Request - State: open - Opened by corneliusroemer 6 months ago

#88 - CI build failure / macOS 12 / libexpat

Issue - State: closed - Opened by jameshadfield 7 months ago - 1 comment
Labels: bug

#88 - CI build failure / macOS 12 / libexpat

Issue - State: closed - Opened by jameshadfield 7 months ago - 1 comment
Labels: bug

#87 - Update lassa CI

Pull Request - State: closed - Opened by joverlee521 7 months ago

#87 - Update lassa CI

Pull Request - State: closed - Opened by joverlee521 7 months ago

#86 - Update avian-flu CI

Pull Request - State: closed - Opened by jameshadfield 7 months ago - 1 comment

#86 - Update avian-flu CI

Pull Request - State: closed - Opened by jameshadfield 7 months ago - 1 comment

#85 - CI: Update test-pathogen-repo-ci

Pull Request - State: closed - Opened by joverlee521 7 months ago

#85 - CI: Update test-pathogen-repo-ci

Pull Request - State: closed - Opened by joverlee521 7 months ago

#84 - Open an issue on failure of scheduled installation check

Issue - State: closed - Opened by victorlin 7 months ago - 1 comment

#83 - Run pathogen CI on multiple subdirs

Issue - State: open - Opened by victorlin 7 months ago - 5 comments

#82 - dev: Add comment about updating the installation workflow's schedule

Pull Request - State: closed - Opened by tsibley 7 months ago

#81 - ENH: support linux-aarch64

Issue - State: open - Opened by corneliusroemer 7 months ago - 1 comment
Labels: enhancement

#81 - ENH: support linux-aarch64

Issue - State: open - Opened by corneliusroemer 7 months ago - 1 comment
Labels: enhancement

#80 - feat: Make osx-arm64 version of conda-base

Pull Request - State: open - Opened by corneliusroemer 7 months ago - 2 comments

#79 - Undo temporary conda-build pin

Issue - State: open - Opened by corneliusroemer 7 months ago
Labels: enhancement

#79 - Undo temporary conda-build pin

Issue - State: open - Opened by corneliusroemer 7 months ago
Labels: enhancement

#78 - Reenable zika/mpox pathogen repo ci

Issue - State: closed - Opened by corneliusroemer 7 months ago - 1 comment
Labels: enhancement

#77 - ENH: Support native osx-arm64 conda install

Issue - State: open - Opened by corneliusroemer 7 months ago - 5 comments
Labels: enhancement

#76 - Minimum tsv-utils build number

Pull Request - State: closed - Opened by corneliusroemer 7 months ago - 1 comment

#75 - tsv-utils raises error in new installation

Issue - State: closed - Opened by joverlee521 7 months ago - 11 comments
Labels: blocked

#74 - Installation failing

Issue - State: closed - Opened by joverlee521 7 months ago - 3 comments

#74 - Installation failing

Issue - State: closed - Opened by joverlee521 7 months ago - 3 comments

#73 - Installation: Drop macos-11

Pull Request - State: closed - Opened by joverlee521 7 months ago - 1 comment

#73 - Installation: Drop macos-11

Pull Request - State: closed - Opened by joverlee521 7 months ago - 1 comment

#72 - Drop macos-11 from GH Action workflow

Issue - State: closed - Opened by joverlee521 7 months ago - 1 comment

#72 - Drop macos-11 from GH Action workflow

Issue - State: closed - Opened by joverlee521 7 months ago - 1 comment

#71 - Add pathogen-embed as a first-party dependency

Pull Request - State: closed - Opened by huddlej 8 months ago

#71 - Add pathogen-embed as a first-party dependency

Pull Request - State: closed - Opened by huddlej 8 months ago

#70 - Provide GNU coreutils in the runtime

Pull Request - State: closed - Opened by tsibley 8 months ago - 1 comment

#69 - Set default shell

Pull Request - State: closed - Opened by victorlin 9 months ago

#69 - Set default shell

Pull Request - State: closed - Opened by victorlin 9 months ago

#68 - Switch from boa → rattler-build

Issue - State: open - Opened by tsibley 9 months ago
Labels: priority: low

#67 - Reference new CI target

Pull Request - State: closed - Opened by victorlin 10 months ago

#67 - Reference new CI target

Pull Request - State: closed - Opened by victorlin 10 months ago

#66 - Fix CI

Pull Request - State: closed - Opened by victorlin 10 months ago

#66 - Fix CI

Pull Request - State: closed - Opened by victorlin 10 months ago

#65 - Installation failing

Issue - State: closed - Opened by joverlee521 10 months ago - 3 comments
Labels: bug

#65 - Installation failing

Issue - State: closed - Opened by joverlee521 10 months ago - 3 comments
Labels: bug

#64 - dev: Test installation on macOS 13 and 14 too

Pull Request - State: closed - Opened by tsibley 12 months ago - 1 comment

#64 - dev: Test installation on macOS 13 and 14 too

Pull Request - State: closed - Opened by tsibley 12 months ago - 1 comment

#63 - Unpin Biopython

Pull Request - State: closed - Opened by victorlin about 1 year ago