Ecosyste.ms: Issues

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GitHub / nextstrain/cli issues and pull requests

#210 - remote: Add --dry-run modes to download, upload, and delete commands

Pull Request - State: closed - Opened by tsibley over 2 years ago - 1 comment

#209 - remote.nextstrain_dot_org: Yield resource URL before deletion not after

Pull Request - State: closed - Opened by tsibley over 2 years ago - 1 comment

#208 - Add a debugging mode controlled by NEXTSTRAIN_DEBUG

Pull Request - State: closed - Opened by tsibley over 2 years ago - 1 comment

#207 - Detect installation via Conda and other suggested upgrade command improvements

Pull Request - State: closed - Opened by tsibley over 2 years ago - 2 comments

#205 - ENH: Link to relevant PRs in changelog

Issue - State: closed - Opened by corneliusroemer over 2 years ago - 2 comments
Labels: enhancement

#204 - BUG: Bioconda installed cli asks for upgrade via pip, it shouldn't

Issue - State: closed - Opened by corneliusroemer over 2 years ago - 4 comments
Labels: bug

#201 - ENH: Add verbose output to `nextstrain remote` (and potentially other CLI commands)

Issue - State: open - Opened by corneliusroemer over 2 years ago - 9 comments
Labels: enhancement

#200 - DOC: How to reset nextstrain password? Get username if you don't remember

Issue - State: open - Opened by corneliusroemer over 2 years ago - 3 comments
Labels: documentation

#199 - Bump nextstrain-sphinx-theme to >=2022.5

Pull Request - State: closed - Opened by victorlin over 2 years ago

#198 - docs: Enable the copybutton extension we enable with our Sphinx theme

Pull Request - State: closed - Opened by tsibley over 2 years ago

#195 - BUG: Update succeeded, but an error occurred pruning old image versions

Issue - State: closed - Opened by corneliusroemer over 2 years ago - 4 comments
Labels: bug

#189 - BUG: Remote upload fails with `requests.exceptions.ConnectionError: [Errno 32] Broken pipe`

Issue - State: closed - Opened by corneliusroemer over 2 years ago - 2 comments
Labels: bug

#184 - Cannot login when installed with Mamba

Issue - State: closed - Opened by victorlin over 2 years ago - 19 comments
Labels: bug

#171 - AttributeError: module 'lib' has no attribute 'X509_V_FLAG_CB_ISSUER_CHECK'

Issue - State: closed - Opened by victorlin almost 3 years ago - 7 comments
Labels: bug

#169 - review of nextstrain remote behavior

Issue - State: closed - Opened by jameshadfield almost 3 years ago - 4 comments
Labels: needs discussion

#166 - Pull before `build` if explicitly using `:latest` image?

Issue - State: open - Opened by tsibley almost 3 years ago - 2 comments
Labels: enhancement

#149 - Add --prompt and --dry-run modes for `remote` family of commands

Issue - State: closed - Opened by tsibley about 3 years ago - 2 comments
Labels: enhancement

#148 - Conda install with Python 3.6 is unusable with `--aws-batch`

Issue - State: closed - Opened by victorlin about 3 years ago - 2 comments
Labels: bug

#136 - Bump minimum Python dependency to 3.7 (or newer)

Issue - State: closed - Opened by huddlej about 3 years ago - 6 comments
Labels: enhancement

#129 - view: Support narratives

Pull Request - State: closed - Opened by tsibley over 3 years ago - 5 comments

#128 - view: Allow user to specify narratives directory

Issue - State: closed - Opened by huddlej over 3 years ago - 3 comments
Labels: enhancement

#123 - Support recursive globbing (**/) for download paths

Issue - State: closed - Opened by jameshadfield over 3 years ago - 3 comments

#114 - Detect install from Conda package in upgrade hints

Issue - State: closed - Opened by tsibley almost 4 years ago - 5 comments
Labels: enhancement

#113 - [batch] Attach to builds no longer in the job queue

Issue - State: open - Opened by tsibley almost 4 years ago - 1 comment
Labels: enhancement

#99 - config: Perform larger refactorings

Issue - State: closed - Opened by kairstenfay over 4 years ago - 1 comment

#98 - config: Add context manager support for combining load() and save()

Issue - State: open - Opened by kairstenfay over 4 years ago - 1 comment

#88 - [aws batch] Progress meter for build dir upload/download

Issue - State: open - Opened by tsibley over 4 years ago - 2 comments
Labels: enhancement

#87 - [update] Clarify messaging around which runners are updating

Issue - State: closed - Opened by tsibley over 4 years ago
Labels: enhancement

#85 - Write an explanation and comparison of the different computing environments/runners

Issue - State: closed - Opened by tsibley over 4 years ago - 1 comment
Labels: documentation

#81 - [build] Add --cpus and --memory options

Pull Request - State: closed - Opened by tsibley over 4 years ago

#56 - [deploy] Hint that a bucket may not be found because of missing/wrong credentials

Issue - State: closed - Opened by rneher over 5 years ago
Labels: papercut

#35 - Switch to running containers via docker-py

Issue - State: open - Opened by tsibley about 6 years ago - 1 comment
Labels: enhancement, low priority

#2 - Support using Singularity to run builds in the container image

Issue - State: closed - Opened by tsibley over 6 years ago - 5 comments