Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / nextstrain/auspice issues and pull requests

#1847 - Always show internal node name in shift-click modal

Issue - State: open - Opened by jameshadfield 26 days ago
Labels: bug

#1846 - Filter URL params don't work if value contains commas

Issue - State: open - Opened by joverlee521 26 days ago - 1 comment
Labels: bug

#1845 - Fix new metadata tip label

Pull Request - State: open - Opened by joverlee521 28 days ago
Labels: preview on nextstrain.org, preview on auspice.us

#1844 - drag-and-drop metadata not available as tip labels

Issue - State: open - Opened by joverlee521 28 days ago - 1 comment
Labels: bug

#1843 - Reduce `npm ci` calls in CI to reduce stochastic failures

Issue - State: open - Opened by jameshadfield about 1 month ago - 2 comments

#1842 - Remove custom LBI color scale

Pull Request - State: closed - Opened by huddlej about 1 month ago - 1 comment

#1841 - Bump webpack from 5.86.0 to 5.94.0

Pull Request - State: open - Opened by dependabot[bot] about 1 month ago
Labels: dependencies, javascript

#1840 - CI: Fail on ESLint warnings

Pull Request - State: closed - Opened by victorlin about 1 month ago

#1839 - CI: Should warnings should cause the lint job to fail?

Issue - State: closed - Opened by joverlee521 about 1 month ago - 2 comments

#1838 - measurements: Revert back to useMemo

Pull Request - State: closed - Opened by joverlee521 about 1 month ago - 1 comment
Labels: preview on nextstrain.org

#1837 - Lint warnings for measurement panel

Issue - State: closed - Opened by joverlee521 about 1 month ago - 3 comments

#1836 - Scatterplots work with temporal YYYY-MM-DD scales

Pull Request - State: closed - Opened by jameshadfield about 1 month ago - 2 comments
Labels: preview on nextstrain.org

#1835 - Temporal scales don't work in scatterplots

Issue - State: closed - Opened by jameshadfield about 1 month ago - 1 comment
Labels: bug

#1834 - controls: Hide date/animation sections for `divOnly` trees

Pull Request - State: closed - Opened by joverlee521 about 1 month ago

#1833 - Hide date/animation control headers for div only trees

Issue - State: closed - Opened by joverlee521 about 1 month ago
Labels: bug

#1832 - Allow YYYY-MM-DD values in a temporal scales

Pull Request - State: closed - Opened by jameshadfield about 1 month ago - 4 comments
Labels: preview on nextstrain.org, preview on auspice.us

#1831 - Metadata download mangles strain names

Issue - State: open - Opened by jameshadfield about 1 month ago
Labels: bug

#1830 - update release docs

Pull Request - State: closed - Opened by jameshadfield about 1 month ago

#1829 - Test new CI workflow

Pull Request - State: closed - Opened by genehack about 1 month ago

#1827 - Limit x-axis by filtered measurements

Pull Request - State: closed - Opened by joverlee521 about 2 months ago - 2 comments
Labels: preview on nextstrain.org

#1825 - Convert numeric dates in measurements panel to calendar date display

Issue - State: open - Opened by huddlej about 2 months ago - 1 comment

#1823 - Change ordering of subplots by field or calculation across fields

Issue - State: open - Opened by huddlej about 2 months ago - 1 comment

#1819 - Color tree by measurements

Issue - State: open - Opened by huddlej about 2 months ago

#1818 - Display number of measurements per row

Issue - State: open - Opened by huddlej about 2 months ago
Labels: source: office hours

#1815 - Add URL parameters for the measurements panel options

Issue - State: open - Opened by huddlej about 2 months ago - 1 comment

#1814 - Limit x-axis by visible measurements

Issue - State: closed - Opened by huddlej about 2 months ago - 1 comment

#1813 - Surface console-based errors in the web UI

Issue - State: open - Opened by genehack about 2 months ago
Labels: enhancement

#1812 - On-the-fly homoplasy colourings

Issue - State: open - Opened by genehack about 2 months ago
Labels: enhancement

#1811 - Write measurements panel tutorial

Issue - State: open - Opened by genehack about 2 months ago
Labels: documentation

#1809 - Narrow the scope of open sharing acknowledgement inclusion

Issue - State: open - Opened by victorlin about 2 months ago - 8 comments

#1808 - Fix broken links [#1807]

Pull Request - State: closed - Opened by genehack about 2 months ago

#1807 - Fix broken links in docs

Issue - State: closed - Opened by genehack about 2 months ago
Labels: documentation

#1806 - missed one broken link [nextstrain/docs.nextstrain.org#14]

Pull Request - State: closed - Opened by genehack about 2 months ago

#1805 - Fix two broken links [nextstrain/docs.nextstrain.org#14]

Pull Request - State: closed - Opened by genehack about 2 months ago

#1804 - Only support downloading Auspice JSONs if dataset name can be parsed

Pull Request - State: closed - Opened by joverlee521 2 months ago - 1 comment
Labels: preview on auspice.us

#1803 - Notify when no datasets are available for download

Issue - State: closed - Opened by joverlee521 2 months ago
Labels: bug

#1802 - Fix measurements bugs

Pull Request - State: closed - Opened by joverlee521 2 months ago - 2 comments
Labels: preview on auspice.us

#1801 - Automatically clean up preview PRs

Issue - State: open - Opened by victorlin 2 months ago
Labels: priority: low

#1800 - Move hard-coded footer descriptions to nextstrain.org

Issue - State: open - Opened by joverlee521 2 months ago - 1 comment

#1798 - Fix RTD build

Pull Request - State: closed - Opened by victorlin 3 months ago

#1797 - [maybe] differentiate between nodes with uncertainty vs nodes missing from colour scale

Issue - State: open - Opened by jameshadfield 3 months ago - 1 comment
Labels: enhancement

#1796 - Convey uncertainty via tip colors

Pull Request - State: closed - Opened by jameshadfield 3 months ago - 4 comments
Labels: preview on nextstrain.org

#1795 - James/second tree dropdown

Pull Request - State: closed - Opened by jameshadfield 3 months ago - 1 comment
Labels: preview on nextstrain.org

#1794 - Fix filter badge display for single trees

Pull Request - State: closed - Opened by jameshadfield 3 months ago - 1 comment

#1792 - scatterplot: Support comparing different genotypes on x and y axis

Issue - State: open - Opened by joverlee521 4 months ago - 1 comment
Labels: enhancement

#1791 - feat: remove missing geo_resolutions warning

Pull Request - State: closed - Opened by ivan-aksamentov 4 months ago

#1790 - Streamline display with onlyPanels

Pull Request - State: closed - Opened by trvrb 4 months ago

#1789 - Bump braces from 3.0.2 to 3.0.3

Pull Request - State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies, javascript

#1788 - Improve second tree loading & parsing

Pull Request - State: closed - Opened by jameshadfield 4 months ago - 2 comments

#1787 - Hide all parts of footer with `?onlyPanels` query

Pull Request - State: closed - Opened by jameshadfield 4 months ago - 1 comment

#1785 - Tangletree genotype colouring

Pull Request - State: closed - Opened by jameshadfield 4 months ago

#1784 - Increase time limit for immutability checks

Pull Request - State: closed - Opened by jameshadfield 4 months ago - 1 comment

#1783 - Fix node-selection issues in RHS trees

Pull Request - State: closed - Opened by jameshadfield 4 months ago

#1782 - Show branch labels in branch hover / branch-selected modal

Issue - State: open - Opened by jameshadfield 4 months ago
Labels: enhancement

#1781 - [tanglegrams] RHS tree data not added to filter options

Issue - State: closed - Opened by jameshadfield 4 months ago - 1 comment
Labels: bug

#1780 - [tanglegrams] RHS tree branch label keys not collected

Issue - State: closed - Opened by jameshadfield 4 months ago
Labels: bug

#1779 - Add support for Node.js version 22

Pull Request - State: closed - Opened by corneliusroemer 4 months ago - 3 comments

#1778 - Latest version on bioconda is outdated: 2.52 instead of 2.53

Issue - State: closed - Opened by corneliusroemer 4 months ago
Labels: bug

#1777 - Automate release process

Issue - State: open - Opened by corneliusroemer 4 months ago - 4 comments
Labels: enhancement

#1776 - Nextclade linkout

Pull Request - State: closed - Opened by jameshadfield 4 months ago - 1 comment
Labels: preview on nextstrain.org

#1775 - Make bioconda aarch64 package available for auspice

Issue - State: closed - Opened by corneliusroemer 4 months ago - 1 comment
Labels: enhancement

#1772 - [tanglegrams] zooming in one tree breaks zooming in the other

Issue - State: open - Opened by jameshadfield 5 months ago
Labels: bug

#1771 - Bump ejs and webpack-bundle-analyzer

Pull Request - State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies, javascript

#1770 - [tanglegrams] Node info modal broken

Issue - State: closed - Opened by jameshadfield 6 months ago - 1 comment
Labels: bug

#1769 - Enabling more divergence scale options than just the two magic ones: time and divergence

Issue - State: open - Opened by corneliusroemer 6 months ago - 2 comments
Labels: enhancement

#1768 - Remove workflow_dispatch trigger from preview PR workflows

Pull Request - State: closed - Opened by victorlin 6 months ago

#1767 - Create preview PRs using labels

Pull Request - State: closed - Opened by victorlin 6 months ago - 5 comments
Labels: preview on nextstrain.org, preview on auspice.us

#1766 - Entropy panel: shift click to select multiple positions

Issue - State: open - Opened by joverlee521 6 months ago - 1 comment
Labels: enhancement

#1765 - Create PRs on other repos with GitHub CLI

Pull Request - State: closed - Opened by victorlin 6 months ago - 1 comment

#1764 - Add download JSON button

Pull Request - State: closed - Opened by jameshadfield 6 months ago - 1 comment

#1763 - Add external links

Pull Request - State: closed - Opened by jameshadfield 6 months ago - 5 comments

#1762 - Bump axios, wait-on and start-server-and-test

Pull Request - State: open - Opened by dependabot[bot] 6 months ago
Labels: dependencies, javascript

#1761 - Bump express from 4.18.2 to 4.19.2

Pull Request - State: open - Opened by dependabot[bot] 6 months ago
Labels: dependencies, javascript

#1760 - Bump webpack-dev-middleware from 3.7.3 to 5.3.4

Pull Request - State: open - Opened by dependabot[bot] 6 months ago
Labels: dependencies, javascript

#1759 - Bump follow-redirects from 1.15.2 to 1.15.6

Pull Request - State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies, javascript

#1756 - `auspice view` not showing radial or rootless tree

Issue - State: open - Opened by aofarrel 7 months ago - 6 comments
Labels: bug

#1755 - [tanglegrams] Unable to view using Safari

Issue - State: closed - Opened by joverlee521 7 months ago
Labels: bug, source: office hours, browser-specific

#1754 - Bump ip from 1.1.8 to 1.1.9

Pull Request - State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies, javascript

#1753 - Restore terminal branch hover/click behaviour

Pull Request - State: closed - Opened by jameshadfield 7 months ago - 1 comment

#1752 - Show mutation split into homoplasic/unique/reversions also on terminal branches, not just internal ones

Issue - State: closed - Opened by corneliusroemer 8 months ago - 16 comments
Labels: bug, regression

#1751 - Bump peter-evans/create-pull-request from 3 to 6

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies, github_actions

#1750 - Restore SVG selections

Pull Request - State: closed - Opened by jameshadfield 8 months ago - 1 comment

#1749 - Improve interaction between selected node modal and strain filters

Pull Request - State: closed - Opened by jameshadfield 8 months ago - 1 comment

#1748 - Filter on continuous (numerical) attributes

Issue - State: open - Opened by jameshadfield 8 months ago
Labels: enhancement, please take this issue

#1747 - Bump axios, wait-on and start-server-and-test

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 1 comment
Labels: dependencies, javascript

#1746 - Bump @babel/traverse from 7.21.4 to 7.23.9

Pull Request - State: closed - Opened by dependabot[bot] 8 months ago - 2 comments
Labels: dependencies, javascript