Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / nextstrain/auspice issues and pull requests
#1847 - Always show internal node name in shift-click modal
Issue -
State: open - Opened by jameshadfield 26 days ago
Labels: bug
#1846 - Filter URL params don't work if value contains commas
Issue -
State: open - Opened by joverlee521 26 days ago
- 1 comment
Labels: bug
#1845 - Fix new metadata tip label
Pull Request -
State: open - Opened by joverlee521 28 days ago
Labels: preview on nextstrain.org, preview on auspice.us
#1844 - drag-and-drop metadata not available as tip labels
Issue -
State: open - Opened by joverlee521 28 days ago
- 1 comment
Labels: bug
#1843 - Reduce `npm ci` calls in CI to reduce stochastic failures
Issue -
State: open - Opened by jameshadfield about 1 month ago
- 2 comments
#1842 - Remove custom LBI color scale
Pull Request -
State: closed - Opened by huddlej about 1 month ago
- 1 comment
#1841 - Bump webpack from 5.86.0 to 5.94.0
Pull Request -
State: open - Opened by dependabot[bot] about 1 month ago
Labels: dependencies, javascript
#1840 - CI: Fail on ESLint warnings
Pull Request -
State: closed - Opened by victorlin about 1 month ago
#1839 - CI: Should warnings should cause the lint job to fail?
Issue -
State: closed - Opened by joverlee521 about 1 month ago
- 2 comments
#1838 - measurements: Revert back to useMemo
Pull Request -
State: closed - Opened by joverlee521 about 1 month ago
- 1 comment
Labels: preview on nextstrain.org
#1837 - Lint warnings for measurement panel
Issue -
State: closed - Opened by joverlee521 about 1 month ago
- 3 comments
#1836 - Scatterplots work with temporal YYYY-MM-DD scales
Pull Request -
State: closed - Opened by jameshadfield about 1 month ago
- 2 comments
Labels: preview on nextstrain.org
#1835 - Temporal scales don't work in scatterplots
Issue -
State: closed - Opened by jameshadfield about 1 month ago
- 1 comment
Labels: bug
#1834 - controls: Hide date/animation sections for `divOnly` trees
Pull Request -
State: closed - Opened by joverlee521 about 1 month ago
#1833 - Hide date/animation control headers for div only trees
Issue -
State: closed - Opened by joverlee521 about 1 month ago
Labels: bug
#1832 - Allow YYYY-MM-DD values in a temporal scales
Pull Request -
State: closed - Opened by jameshadfield about 1 month ago
- 4 comments
Labels: preview on nextstrain.org, preview on auspice.us
#1831 - Metadata download mangles strain names
Issue -
State: open - Opened by jameshadfield about 1 month ago
Labels: bug
#1830 - update release docs
Pull Request -
State: closed - Opened by jameshadfield about 1 month ago
#1829 - Test new CI workflow
Pull Request -
State: closed - Opened by genehack about 1 month ago
#1828 - Handle edge case where measurements' std dev exceeds x-scale
Issue -
State: open - Opened by joverlee521 about 1 month ago
#1827 - Limit x-axis by filtered measurements
Pull Request -
State: closed - Opened by joverlee521 about 2 months ago
- 2 comments
Labels: preview on nextstrain.org
#1826 - Use i18next translation features for measurements panel options
Issue -
State: open - Opened by huddlej about 2 months ago
#1825 - Convert numeric dates in measurements panel to calendar date display
Issue -
State: open - Opened by huddlej about 2 months ago
- 1 comment
#1824 - Support grouping measurements within each panel row by a measurement data field
Issue -
State: open - Opened by huddlej about 2 months ago
#1823 - Change ordering of subplots by field or calculation across fields
Issue -
State: open - Opened by huddlej about 2 months ago
- 1 comment
#1822 - Split or word wrap SVG text for y-axis labels in measurements panel groups
Issue -
State: open - Opened by huddlej about 2 months ago
#1821 - Color measurement categories by their underlying reference sera colors in the tree
Issue -
State: open - Opened by huddlej about 2 months ago
#1820 - Link hover actions in measurements panel to tip radii changes in the tree
Issue -
State: open - Opened by huddlej about 2 months ago
#1819 - Color tree by measurements
Issue -
State: open - Opened by huddlej about 2 months ago
#1818 - Display number of measurements per row
Issue -
State: open - Opened by huddlej about 2 months ago
Labels: source: office hours
#1817 - Set the height of each row in the measurements panel based on number of measurements displayed
Issue -
State: open - Opened by huddlej about 2 months ago
#1816 - Add modal display of measurements details on selection of a specific raw measurement
Issue -
State: open - Opened by huddlej about 2 months ago
- 1 comment
#1815 - Add URL parameters for the measurements panel options
Issue -
State: open - Opened by huddlej about 2 months ago
- 1 comment
#1814 - Limit x-axis by visible measurements
Issue -
State: closed - Opened by huddlej about 2 months ago
- 1 comment
#1813 - Surface console-based errors in the web UI
Issue -
State: open - Opened by genehack about 2 months ago
Labels: enhancement
#1812 - On-the-fly homoplasy colourings
Issue -
State: open - Opened by genehack about 2 months ago
Labels: enhancement
#1811 - Write measurements panel tutorial
Issue -
State: open - Opened by genehack about 2 months ago
Labels: documentation
#1809 - Narrow the scope of open sharing acknowledgement inclusion
Issue -
State: open - Opened by victorlin about 2 months ago
- 8 comments
#1808 - Fix broken links [#1807]
Pull Request -
State: closed - Opened by genehack about 2 months ago
#1807 - Fix broken links in docs
Issue -
State: closed - Opened by genehack about 2 months ago
Labels: documentation
#1806 - missed one broken link [nextstrain/docs.nextstrain.org#14]
Pull Request -
State: closed - Opened by genehack about 2 months ago
#1805 - Fix two broken links [nextstrain/docs.nextstrain.org#14]
Pull Request -
State: closed - Opened by genehack about 2 months ago
#1804 - Only support downloading Auspice JSONs if dataset name can be parsed
Pull Request -
State: closed - Opened by joverlee521 2 months ago
- 1 comment
Labels: preview on auspice.us
#1803 - Notify when no datasets are available for download
Issue -
State: closed - Opened by joverlee521 2 months ago
Labels: bug
#1802 - Fix measurements bugs
Pull Request -
State: closed - Opened by joverlee521 2 months ago
- 2 comments
Labels: preview on auspice.us
#1801 - Automatically clean up preview PRs
Issue -
State: open - Opened by victorlin 2 months ago
Labels: priority: low
#1800 - Move hard-coded footer descriptions to nextstrain.org
Issue -
State: open - Opened by joverlee521 2 months ago
- 1 comment
#1799 - "show confidence intervals" toggle is sometimes incorrectly hidden
Issue -
State: open - Opened by jameshadfield 3 months ago
Labels: bug
#1798 - Fix RTD build
Pull Request -
State: closed - Opened by victorlin 3 months ago
#1797 - [maybe] differentiate between nodes with uncertainty vs nodes missing from colour scale
Issue -
State: open - Opened by jameshadfield 3 months ago
- 1 comment
Labels: enhancement
#1796 - Convey uncertainty via tip colors
Pull Request -
State: closed - Opened by jameshadfield 3 months ago
- 4 comments
Labels: preview on nextstrain.org
#1795 - James/second tree dropdown
Pull Request -
State: closed - Opened by jameshadfield 3 months ago
- 1 comment
Labels: preview on nextstrain.org
#1794 - Fix filter badge display for single trees
Pull Request -
State: closed - Opened by jameshadfield 3 months ago
- 1 comment
#1792 - scatterplot: Support comparing different genotypes on x and y axis
Issue -
State: open - Opened by joverlee521 4 months ago
- 1 comment
Labels: enhancement
#1791 - feat: remove missing geo_resolutions warning
Pull Request -
State: closed - Opened by ivan-aksamentov 4 months ago
#1790 - Streamline display with onlyPanels
Pull Request -
State: closed - Opened by trvrb 4 months ago
#1789 - Bump braces from 3.0.2 to 3.0.3
Pull Request -
State: open - Opened by dependabot[bot] 4 months ago
Labels: dependencies, javascript
#1788 - Improve second tree loading & parsing
Pull Request -
State: closed - Opened by jameshadfield 4 months ago
- 2 comments
#1787 - Hide all parts of footer with `?onlyPanels` query
Pull Request -
State: closed - Opened by jameshadfield 4 months ago
- 1 comment
#1786 - [tanglegrams] fix browser-specific bug where the RHS tree wasn't displayed
Pull Request -
State: closed - Opened by jameshadfield 4 months ago
#1785 - Tangletree genotype colouring
Pull Request -
State: closed - Opened by jameshadfield 4 months ago
#1784 - Increase time limit for immutability checks
Pull Request -
State: closed - Opened by jameshadfield 4 months ago
- 1 comment
#1783 - Fix node-selection issues in RHS trees
Pull Request -
State: closed - Opened by jameshadfield 4 months ago
#1782 - Show branch labels in branch hover / branch-selected modal
Issue -
State: open - Opened by jameshadfield 4 months ago
Labels: enhancement
#1781 - [tanglegrams] RHS tree data not added to filter options
Issue -
State: closed - Opened by jameshadfield 4 months ago
- 1 comment
Labels: bug
#1780 - [tanglegrams] RHS tree branch label keys not collected
Issue -
State: closed - Opened by jameshadfield 4 months ago
Labels: bug
#1779 - Add support for Node.js version 22
Pull Request -
State: closed - Opened by corneliusroemer 4 months ago
- 3 comments
#1778 - Latest version on bioconda is outdated: 2.52 instead of 2.53
Issue -
State: closed - Opened by corneliusroemer 4 months ago
Labels: bug
#1777 - Automate release process
Issue -
State: open - Opened by corneliusroemer 4 months ago
- 4 comments
Labels: enhancement
#1776 - Nextclade linkout
Pull Request -
State: closed - Opened by jameshadfield 4 months ago
- 1 comment
Labels: preview on nextstrain.org
#1775 - Make bioconda aarch64 package available for auspice
Issue -
State: closed - Opened by corneliusroemer 4 months ago
- 1 comment
Labels: enhancement
#1774 - Reset layout in entropy view has no effect when URL params are set: either disable button in that case, or make it override URL params
Issue -
State: open - Opened by corneliusroemer 4 months ago
Labels: bug
#1773 - [tanglegrams] genotype is only computed for LHS tree
Issue -
State: closed - Opened by jameshadfield 4 months ago
#1772 - [tanglegrams] zooming in one tree breaks zooming in the other
Issue -
State: open - Opened by jameshadfield 5 months ago
Labels: bug
#1771 - Bump ejs and webpack-bundle-analyzer
Pull Request -
State: open - Opened by dependabot[bot] 5 months ago
Labels: dependencies, javascript
#1770 - [tanglegrams] Node info modal broken
Issue -
State: closed - Opened by jameshadfield 6 months ago
- 1 comment
Labels: bug
#1769 - Enabling more divergence scale options than just the two magic ones: time and divergence
Issue -
State: open - Opened by corneliusroemer 6 months ago
- 2 comments
Labels: enhancement
#1768 - Remove workflow_dispatch trigger from preview PR workflows
Pull Request -
State: closed - Opened by victorlin 6 months ago
#1767 - Create preview PRs using labels
Pull Request -
State: closed - Opened by victorlin 6 months ago
- 5 comments
Labels: preview on nextstrain.org, preview on auspice.us
#1766 - Entropy panel: shift click to select multiple positions
Issue -
State: open - Opened by joverlee521 6 months ago
- 1 comment
Labels: enhancement
#1765 - Create PRs on other repos with GitHub CLI
Pull Request -
State: closed - Opened by victorlin 6 months ago
- 1 comment
#1764 - Add download JSON button
Pull Request -
State: closed - Opened by jameshadfield 6 months ago
- 1 comment
#1763 - Add external links
Pull Request -
State: closed - Opened by jameshadfield 6 months ago
- 5 comments
#1762 - Bump axios, wait-on and start-server-and-test
Pull Request -
State: open - Opened by dependabot[bot] 6 months ago
Labels: dependencies, javascript
#1761 - Bump express from 4.18.2 to 4.19.2
Pull Request -
State: open - Opened by dependabot[bot] 6 months ago
Labels: dependencies, javascript
#1760 - Bump webpack-dev-middleware from 3.7.3 to 5.3.4
Pull Request -
State: open - Opened by dependabot[bot] 6 months ago
Labels: dependencies, javascript
#1759 - Bump follow-redirects from 1.15.2 to 1.15.6
Pull Request -
State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies, javascript
#1758 - measurements panel does not honor the value of `raw` in the `measurements_display` field of the measurements JSON
Issue -
State: closed - Opened by huddlej 7 months ago
Labels: bug
#1757 - measurements panel crashes on load in Auspice when no threshold is provided during `augur measurements export`
Issue -
State: closed - Opened by huddlej 7 months ago
Labels: bug
#1756 - `auspice view` not showing radial or rootless tree
Issue -
State: open - Opened by aofarrel 7 months ago
- 6 comments
Labels: bug
#1755 - [tanglegrams] Unable to view using Safari
Issue -
State: closed - Opened by joverlee521 7 months ago
Labels: bug, source: office hours, browser-specific
#1754 - Bump ip from 1.1.8 to 1.1.9
Pull Request -
State: open - Opened by dependabot[bot] 7 months ago
Labels: dependencies, javascript
#1753 - Restore terminal branch hover/click behaviour
Pull Request -
State: closed - Opened by jameshadfield 7 months ago
- 1 comment
#1752 - Show mutation split into homoplasic/unique/reversions also on terminal branches, not just internal ones
Issue -
State: closed - Opened by corneliusroemer 8 months ago
- 16 comments
Labels: bug, regression
#1751 - Bump peter-evans/create-pull-request from 3 to 6
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 1 comment
Labels: dependencies, github_actions
#1750 - Restore SVG selections
Pull Request -
State: closed - Opened by jameshadfield 8 months ago
- 1 comment
#1749 - Improve interaction between selected node modal and strain filters
Pull Request -
State: closed - Opened by jameshadfield 8 months ago
- 1 comment
#1748 - Filter on continuous (numerical) attributes
Issue -
State: open - Opened by jameshadfield 8 months ago
Labels: enhancement, please take this issue
#1747 - Bump axios, wait-on and start-server-and-test
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 1 comment
Labels: dependencies, javascript
#1746 - Bump @babel/traverse from 7.21.4 to 7.23.9
Pull Request -
State: closed - Opened by dependabot[bot] 8 months ago
- 2 comments
Labels: dependencies, javascript