Ecosyste.ms: Issues

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GitHub / mwang87/metabolomicsspectrumresolver issues and pull requests

#201 - Multiple Repos and NativeIDs

Pull Request - State: closed - Opened by mwang87 5 months ago

#200 - updating parsing

Pull Request - State: closed - Opened by mwang87 8 months ago

#199 - Cosine in Dash interface and JSON don't always match

Issue - State: open - Opened by helenamrusso 9 months ago - 3 comments

#198 - [Bug] Resolving Some MassBank Accessions

Issue - State: open - Opened by mwang87 over 1 year ago - 1 comment

#197 - Adding support for GNPS2 precursors

Pull Request - State: closed - Opened by mwang87 almost 2 years ago

#196 - updating parsing support for tinymass

Pull Request - State: closed - Opened by mwang87 almost 2 years ago

#195 - Gnps2

Pull Request - State: closed - Opened by mwang87 about 2 years ago

#194 - GNPS2 Support

Pull Request - State: closed - Opened by mwang87 about 2 years ago

#193 - Development Branch

Pull Request - State: open - Opened by mwang87 about 2 years ago

#192 - Upgrade

Pull Request - State: closed - Opened by mwang87 about 2 years ago

#191 - upgrade working version

Pull Request - State: closed - Opened by mwang87 about 2 years ago

#190 - Fixing Builds and Automation

Pull Request - State: open - Opened by mwang87 about 2 years ago

#189 - Migrating to Nginx updated

Pull Request - State: closed - Opened by mwang87 over 2 years ago

#188 - Updating parsing to be compatible with new Massbank Acessions

Pull Request - State: closed - Opened by mwang87 over 2 years ago

#187 - Adding Support for Metabolomics Workbench USIs

Pull Request - State: open - Opened by mwang87 over 2 years ago - 1 comment

#186 - [Metabolights] Native support for single scan extraction

Issue - State: open - Opened by mwang87 over 2 years ago
Labels: enhancement

#185 - [Workbench] Getting Native Support for Metabolomics Workbench

Issue - State: open - Opened by mwang87 over 2 years ago
Labels: enhancement

#184 - [New Feature] Resolution of File Level

Issue - State: open - Opened by mwang87 over 2 years ago
Labels: enhancement

#183 - [New Feature] Given a USI, we should resolve the URL where we actually got the data

Issue - State: open - Opened by mwang87 over 2 years ago - 1 comment
Labels: enhancement

#182 - Export text as SVG fonts

Issue - State: closed - Opened by bittremieux about 3 years ago

#181 - [New Feature] Adding Filtering Options in the UI

Issue - State: open - Opened by mwang87 about 3 years ago
Labels: enhancement

#180 - [Bug] Lower Cosine that we should be getting

Issue - State: closed - Opened by mwang87 about 3 years ago - 1 comment
Labels: bug

#179 - Tweaking options for scalability

Pull Request - State: closed - Opened by mwang87 about 3 years ago

#178 - [Just a test, will discard] update timeouts by 1s

Pull Request - State: closed - Opened by benpullman over 3 years ago

#177 - Add feature to allow for peak passing directly into mirror plots

Pull Request - State: closed - Opened by benpullman over 3 years ago - 4 comments

#176 - Bug fix for Resolver Copy

Pull Request - State: closed - Opened by mwang87 over 3 years ago

#175 - Fix copy link button

Issue - State: closed - Opened by bittremieux over 3 years ago
Labels: bug

#174 - [homepage] Add citation to home page

Issue - State: open - Opened by mwang87 over 3 years ago

#173 - In silico USI Proposal

Issue - State: open - Opened by mwang87 over 3 years ago - 4 comments
Labels: enhancement

#172 - updating documentation

Pull Request - State: closed - Opened by mwang87 over 3 years ago

#171 - Mirror plot default peak annotation

Issue - State: open - Opened by bittremieux over 3 years ago
Labels: bug

#170 - Minor interface improvements

Pull Request - State: closed - Opened by mwang87 over 3 years ago - 1 comment

#169 - URL-quote MassIVE filenames

Pull Request - State: closed - Opened by bittremieux over 3 years ago

#168 - Most recent GNPS library annotation

Pull Request - State: closed - Opened by bittremieux over 3 years ago

#167 - Native Proforma resolution

Pull Request - State: open - Opened by bittremieux over 3 years ago

#166 - Minor interface improvements

Pull Request - State: closed - Opened by bittremieux over 3 years ago - 2 comments

#165 - Add data privacy page

Pull Request - State: closed - Opened by bittremieux over 3 years ago

#164 - Remove legacy parsing

Pull Request - State: closed - Opened by bittremieux over 3 years ago

#163 - Reformat and restructure files

Pull Request - State: closed - Opened by bittremieux over 3 years ago - 2 comments

#162 - Dash dashboard

Pull Request - State: closed - Opened by bittremieux over 3 years ago

#161 - adding copy url button

Pull Request - State: closed - Opened by mwang87 over 3 years ago

#160 - bug fix for locust testing

Pull Request - State: closed - Opened by mwang87 over 3 years ago

#159 - Fix task annotation parsing

Pull Request - State: closed - Opened by benpullman over 3 years ago

#158 - Support ProForma Natively in Resolver

Issue - State: open - Opened by mwang87 over 3 years ago - 1 comment
Labels: bug

#157 - Color shifted peaks differently

Issue - State: open - Opened by bittremieux over 3 years ago
Labels: enhancement

#156 - mzspec:GNPS:GNPS-LIBRARY:accession:CCMSLIB00000001547 is returning the wrong m/z

Issue - State: closed - Opened by mwang87 over 3 years ago
Labels: bug

#155 - Lowering the locust test load

Pull Request - State: closed - Opened by mwang87 almost 4 years ago

#154 - Not meant to merge - testing exception

Pull Request - State: closed - Opened by mwang87 almost 4 years ago

#153 - [QRCode] Overlay small version of spectrum on top of QR Code

Issue - State: open - Opened by mwang87 almost 4 years ago
Labels: enhancement

#152 - Dash Interface Refactor

Pull Request - State: closed - Opened by mwang87 almost 4 years ago - 2 comments

#151 - Update Dash with Worker Updates

Pull Request - State: closed - Opened by mwang87 almost 4 years ago

#150 - Pull in worker updates to Dash

Pull Request - State: closed - Opened by mwang87 almost 4 years ago

#149 - Dash Interface Refactor

Pull Request - State: closed - Opened by mwang87 almost 4 years ago

#148 - Worker refactor

Pull Request - State: closed - Opened by mwang87 almost 4 years ago - 2 comments

#147 - Fixing testing by allowing longer tolerances

Pull Request - State: closed - Opened by mwang87 almost 4 years ago - 3 comments

#146 - Adding Proteomics Support via USI

Pull Request - State: closed - Opened by mwang87 almost 4 years ago - 1 comment

#145 - wip hack for peptides

Pull Request - State: closed - Opened by mwang87 almost 4 years ago

#144 - MassIVE Task identifier Support

Issue - State: closed - Opened by mwang87 almost 4 years ago

#143 - Proteomics Support

Issue - State: closed - Opened by mwang87 almost 4 years ago - 4 comments

#142 - adding new resolveable task identifiers

Pull Request - State: closed - Opened by mwang87 almost 4 years ago

#140 - [Bug] Not Resolving

Issue - State: closed - Opened by mwang87 almost 4 years ago - 1 comment

#139 - USIs not retrieved from MassIVE

Issue - State: closed - Opened by bittremieux about 4 years ago - 3 comments
Labels: bug

#138 - Fix for MassIVE data with empty peak list

Pull Request - State: closed - Opened by bittremieux about 4 years ago

#137 - Upload user spectra?

Issue - State: open - Opened by schymane over 4 years ago - 2 comments
Labels: enhancement

#136 - Adding new API for JSON Mirror function

Pull Request - State: closed - Opened by mwang87 over 4 years ago - 2 comments

#135 - Showing absolute intensity in the plot and the fragment ion list

Issue - State: closed - Opened by lfnothias over 4 years ago - 1 comment

#134 - Dragging the plot to zoom in/out or other control

Issue - State: closed - Opened by lfnothias over 4 years ago - 1 comment

#133 - Adding a threshold to label fragment ions

Issue - State: closed - Opened by lfnothias over 4 years ago - 1 comment

#132 - Adding a minimum intensity threshold to the fragment ion list

Issue - State: closed - Opened by lfnothias over 4 years ago - 1 comment

#131 - Validate PROXI response to its Swagger API definition

Pull Request - State: closed - Opened by bittremieux over 4 years ago

#130 - Adding USI Update to Spectrum/Mirror Pages

Pull Request - State: closed - Opened by mwang87 over 4 years ago - 1 comment

#129 - Crashing Server with concurrent accesses

Issue - State: open - Opened by mwang87 over 4 years ago
Labels: bug

#128 - merge update

Pull Request - State: closed - Opened by mwang87 over 4 years ago

#127 - Fix matching peaks coloring

Pull Request - State: closed - Opened by bittremieux over 4 years ago

#126 - Timeout when requesting USIs from external resources

Pull Request - State: closed - Opened by bittremieux over 4 years ago

#125 - Adding Favicon

Pull Request - State: closed - Opened by mwang87 over 4 years ago

#124 - Settable USI from Mirror Page

Issue - State: closed - Opened by mwang87 over 4 years ago

#123 - Copy URL for Images

Pull Request - State: closed - Opened by mwang87 over 4 years ago

#122 - Title Parameter

Pull Request - State: closed - Opened by mwang87 over 4 years ago

#121 - Proper HTTP error codes

Pull Request - State: closed - Opened by bittremieux over 4 years ago - 1 comment

#118 - Image rendering with potentially custom title

Issue - State: closed - Opened by mwang87 over 4 years ago

#117 - QR Code including all render parameters

Issue - State: closed - Opened by mwang87 over 4 years ago
Labels: bug

#116 - Embed Metabolomics USI Links

Issue - State: open - Opened by mwang87 over 4 years ago - 1 comment
Labels: enhancement

#114 - Proper HTTP error codes

Issue - State: closed - Opened by bittremieux over 4 years ago

#107 - Package code, add CLI, and update tests

Pull Request - State: closed - Opened by cthoyt over 4 years ago - 5 comments

#100 - Wrong Error 500 for not-found spectrum

Issue - State: closed - Opened by sneumann over 4 years ago - 2 comments
Labels: bug

#99 - Enable Intensity that is not normalized in the Y axis

Issue - State: open - Opened by mwang87 over 4 years ago
Labels: enhancement

#98 - Make cosine optional in mirror

Issue - State: closed - Opened by sdrogers over 4 years ago - 2 comments
Labels: bug

#97 - [Cache] Externalize cache for requests

Issue - State: open - Opened by mwang87 over 4 years ago
Labels: enhancement

#96 - [Cache] Caching the images on the server side since they are slow to generate

Issue - State: open - Opened by mwang87 over 4 years ago
Labels: enhancement

#95 - MS1 Rendering Examples

Pull Request - State: closed - Opened by mwang87 over 4 years ago - 2 comments

#94 - Using new GNPS API to get precursor and charge information

Pull Request - State: closed - Opened by mwang87 over 4 years ago - 1 comment

#93 - bug fix for memory leak

Pull Request - State: closed - Opened by mwang87 over 4 years ago

#92 - customizing annotated spacing for mirrors

Pull Request - State: closed - Opened by mwang87 over 4 years ago - 1 comment

#91 - [Bug] Mirror Max Intensity

Issue - State: closed - Opened by mwang87 over 4 years ago - 1 comment

#90 - [Copy] Copy link for png to easily embed

Issue - State: open - Opened by mwang87 over 4 years ago - 1 comment
Labels: enhancement

#90 - [Copy] Copy link for png to easily embed

Issue - State: open - Opened by mwang87 over 4 years ago - 1 comment
Labels: enhancement

#89 - [Log Parsing] Create log parser to summarize the set of USI's and the response codes

Issue - State: open - Opened by mwang87 over 4 years ago
Labels: enhancement

#89 - [Log Parsing] Create log parser to summarize the set of USI's and the response codes

Issue - State: open - Opened by mwang87 over 4 years ago
Labels: enhancement