Ecosyste.ms: Issues

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GitHub / monarch-initiative/ontorunner issues and pull requests

#55 - Bump markdown-it-py from 2.1.0 to 2.2.0

Pull Request - State: open - Opened by dependabot[bot] almost 2 years ago
Labels: dependencies

#54 - Bump certifi from 2022.9.24 to 2022.12.7

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#53 - Bump pillow from 9.2.0 to 9.3.0

Pull Request - State: open - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#52 - Bump lxml from 4.9.0 to 4.9.1

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#51 - Added demo notebook

Pull Request - State: closed - Opened by hrshdhgd over 2 years ago

#50 - Fix docs

Pull Request - State: closed - Opened by hrshdhgd over 2 years ago

#49 - Bump pywin32 from 227 to 301

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#48 - Using BERO

Pull Request - State: closed - Opened by hrshdhgd over 2 years ago

#47 - Add visualization from displacy.

Pull Request - State: closed - Opened by hrshdhgd over 2 years ago

#46 - Bump pywin32 from 227 to 301

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago
Labels: dependencies

#45 - Enable PyPi release through GitHub

Issue - State: open - Opened by hrshdhgd over 2 years ago
Labels: on ice

#44 - Apply poetry

Pull Request - State: closed - Opened by hrshdhgd over 2 years ago - 1 comment

#43 - Update docs

Pull Request - State: closed - Opened by hrshdhgd over 2 years ago

#42 - Auto docs

Pull Request - State: closed - Opened by hrshdhgd over 2 years ago

#41 - Tox implementation and nodes_and_edges preservation

Pull Request - State: closed - Opened by hrshdhgd over 2 years ago

#40 - Implement `sphinx` doc auto-deployment

Issue - State: closed - Opened by hrshdhgd almost 3 years ago - 1 comment

#39 - Create a CLI for display a displacy representation of text/ article.

Issue - State: closed - Opened by hrshdhgd almost 3 years ago - 2 comments

#38 - `poetry`-fy the project.

Issue - State: closed - Opened by hrshdhgd almost 3 years ago - 3 comments

#37 - `tox`-ify the project

Issue - State: closed - Opened by hrshdhgd almost 3 years ago - 1 comment

#36 - Make getting ancestors optional

Pull Request - State: closed - Opened by hrshdhgd almost 3 years ago

#35 - Add an 'ancestors' column listing all ancestors of the `object_label`

Pull Request - State: closed - Opened by hrshdhgd almost 3 years ago

#34 - spacy embedded within ontoRunNER

Pull Request - State: closed - Opened by hrshdhgd about 3 years ago

#33 - wrapper bioportal and/or ols

Issue - State: open - Opened by cmungall about 3 years ago

#32 - Release ready version

Pull Request - State: closed - Opened by hrshdhgd about 3 years ago

#31 - Include frequency of match term in corpus

Issue - State: open - Opened by cmungall over 3 years ago

#30 - include is-a ancestor classes in output

Issue - State: open - Opened by cmungall over 3 years ago - 1 comment

#29 - updated docs as per change

Pull Request - State: closed - Opened by hrshdhgd over 3 years ago

#28 - New output format

Pull Request - State: closed - Opened by hrshdhgd over 3 years ago

#27 - pypi publish

Pull Request - State: closed - Opened by hrshdhgd over 3 years ago

#26 - tests

Pull Request - State: closed - Opened by hrshdhgd over 3 years ago

#25 - renamed runner to ontorunner and oger_module

Pull Request - State: closed - Opened by hrshdhgd over 3 years ago

#24 - synonym rules

Pull Request - State: open - Opened by cmungall over 3 years ago

#23 - Flake8 edit

Pull Request - State: closed - Opened by hrshdhgd over 3 years ago

#22 - added csv sniffing to determine file format #21

Pull Request - State: closed - Opened by hrshdhgd over 3 years ago

#21 - Text file passed using CLI gives error

Issue - State: closed - Opened by hrshdhgd over 3 years ago - 1 comment
Labels: bug

#20 - Add another column where it shows the matched synonym

Issue - State: closed - Opened by hrshdhgd over 3 years ago - 1 comment

#19 - Add 'match_column', 'match_field' and distance metrics

Pull Request - State: closed - Opened by hrshdhgd over 3 years ago

#18 - Issue 17

Pull Request - State: closed - Opened by hrshdhgd over 3 years ago

#17 - Add additional columns to the output

Issue - State: closed - Opened by hrshdhgd over 3 years ago

#16 - Consolidate duplicates

Pull Request - State: closed - Opened by hrshdhgd over 3 years ago

#15 - column names lowercased as per #12

Pull Request - State: closed - Opened by hrshdhgd over 3 years ago

#14 - Data normalizaton

Pull Request - State: closed - Opened by hrshdhgd over 3 years ago

#13 - Black formatting

Pull Request - State: closed - Opened by hrshdhgd over 3 years ago

#12 - Changes to output format

Issue - State: open - Opened by cmungall over 3 years ago - 5 comments

#11 - Define a schema for the output

Issue - State: open - Opened by cmungall over 3 years ago - 4 comments

#9 - release on pypi

Issue - State: closed - Opened by cmungall over 3 years ago - 4 comments

#8 - Can't install with pip install git+https... on new Mac

Issue - State: closed - Opened by turbomam almost 4 years ago - 7 comments

#7 - Add sentence

Pull Request - State: closed - Opened by hrshdhgd almost 4 years ago

#6 - setup couldn't find OGER

Issue - State: closed - Opened by turbomam almost 4 years ago - 2 comments

#5 - Hh rearrange

Pull Request - State: closed - Opened by hrshdhgd almost 4 years ago - 1 comment

#4 - Hh rearrange

Pull Request - State: closed - Opened by hrshdhgd almost 4 years ago

#3 - Create setup.py

Issue - State: closed - Opened by hrshdhgd about 4 years ago - 1 comment

#2 - Hh multi file processing

Pull Request - State: closed - Opened by hrshdhgd about 4 years ago - 1 comment

#1 - Build a template for running OGER

Issue - State: closed - Opened by deepakunni3 over 4 years ago - 1 comment