Ecosyste.ms: Issues
An open API service for providing issue and pull request metadata for open source projects.
GitHub / monarch-initiative/dipper issues and pull requests
#1016 - biolink-model.owl.ttl is moving locations on github
Issue -
State: open - Opened by sierra-moxon 10 months ago
#1015 - CVE-2007-4559 Patch
Pull Request -
State: open - Opened by TrellixVulnTeam almost 2 years ago
#1014 - Fix STRING_DWN
Pull Request -
State: open - Opened by RichardBruskiewich over 2 years ago
#1013 - Update to use clean gene tsv
Pull Request -
State: closed - Opened by kshefchek almost 3 years ago
#1012 - Switch to SSH for private repo pull
Pull Request -
State: closed - Opened by kshefchek about 3 years ago
#1011 - Where/how can I access ChemicalSubstance associations?
Issue -
State: closed - Opened by ehinderer over 3 years ago
- 1 comment
#1010 - xenbase prototype
Pull Request -
State: closed - Opened by kshefchek over 3 years ago
#1009 - Oddities with source names in QC
Issue -
State: closed - Opened by kshefchek over 3 years ago
#1008 - IMPC
Pull Request -
State: closed - Opened by TomConlin over 3 years ago
#1007 - Flybase files missing
Issue -
State: open - Opened by TomConlin over 3 years ago
#1006 - Parse forward slashes in gwas catalog
Issue -
State: open - Opened by kshefchek over 3 years ago
- 1 comment
#1005 - ClinVar
Pull Request -
State: closed - Opened by TomConlin over 3 years ago
#1004 - add new variant type 'haplotype, single variant'
Pull Request -
State: closed - Opened by kshefchek almost 4 years ago
- 1 comment
#1003 - Skip normal phenotypes in MGI
Pull Request -
State: closed - Opened by kshefchek almost 4 years ago
- 1 comment
#1002 - Split PATO namespaces
Pull Request -
State: closed - Opened by RichardBruskiewich almost 4 years ago
- 1 comment
#1000 - Fix WormBase prefix URI to Identifiers.org entry
Pull Request -
State: closed - Opened by RichardBruskiewich almost 4 years ago
- 1 comment
#999 - DOID -> MONDO
Pull Request -
State: closed - Opened by TomConlin almost 4 years ago
#998 - OMIA uses obsolete disease class
Issue -
State: closed - Opened by cmungall almost 4 years ago
- 4 comments
Labels: omia
#997 - remove pseudo-blank nodes in OMIA
Issue -
State: open - Opened by cmungall almost 4 years ago
Labels: omia
#996 - mode of inhertance in OMIA
Issue -
State: open - Opened by cmungall almost 4 years ago
Labels: omia
#995 - update common taxa in jenkins
Pull Request -
State: closed - Opened by kshefchek almost 4 years ago
- 3 comments
#994 - Fix RGD and Xenbase gene to ensembl gene equivalence
Issue -
State: open - Opened by kshefchek almost 4 years ago
- 2 comments
#993 - dot-qc color change
Pull Request -
State: closed - Opened by TomConlin almost 4 years ago
#992 - special handling for transcript IDs in reactome
Issue -
State: open - Opened by kshefchek almost 4 years ago
#991 - change dipper cache host
Pull Request -
State: closed - Opened by kshefchek almost 4 years ago
- 3 comments
#990 - Go: fix list gaf list parsing
Pull Request -
State: closed - Opened by TomConlin almost 4 years ago
#989 - AnimalQTL updates
Pull Request -
State: closed - Opened by TomConlin almost 4 years ago
- 1 comment
#988 - change author to monarch init
Pull Request -
State: closed - Opened by kshefchek almost 4 years ago
#987 - disease phenotype clique merging
Issue -
State: open - Opened by kshefchek almost 4 years ago
- 1 comment
#986 - update tems&labels, add a new mouse
Pull Request -
State: closed - Opened by TomConlin almost 4 years ago
#985 - IMPC: adapt to their Version 12
Pull Request -
State: closed - Opened by TomConlin almost 4 years ago
#984 - Adendum II to PR #982 (Digest bnode ids & refactor)
Pull Request -
State: closed - Opened by TomConlin almost 4 years ago
#983 - Adendum to PR #982 (Digest bnode ids & refactor)
Pull Request -
State: closed - Opened by TomConlin almost 4 years ago
- 1 comment
#982 - Digest bnode ids & refactor
Pull Request -
State: closed - Opened by TomConlin almost 4 years ago
#981 - Coriell cell type term; Jenkins reorder; dublin core
Pull Request -
State: closed - Opened by TomConlin almost 4 years ago
#980 - add inverse property paths for symmetric predicates
Pull Request -
State: closed - Opened by kshefchek almost 4 years ago
#979 - Disambiguate dcat:Distribution from dcat:distribution
Pull Request -
State: closed - Opened by nicholsn about 4 years ago
#978 - Change type of flybase alleles from allele (GENO:0000512) to variant allele (GENO:0000002)
Issue -
State: open - Opened by kshefchek about 4 years ago
#977 - infer categories sparql should account for symmetry of equiv/sameAs relations
Issue -
State: closed - Opened by cmungall about 4 years ago
- 1 comment
Labels: bug
#976 - KEGG refactor & OMIA fix
Pull Request -
State: closed - Opened by TomConlin about 4 years ago
#975 - NCBI:
Pull Request -
State: closed - Opened by TomConlin about 4 years ago
#974 - Orphanet via Model.py discourage CURIE/URI objects as RDF literals
Pull Request -
State: closed - Opened by TomConlin about 4 years ago
#973 - remove category from G2D
Pull Request -
State: closed - Opened by kshefchek about 4 years ago
- 1 comment
#972 - Disease-gene mixups for biolink:categories in OMIM ingest
Issue -
State: closed - Opened by kshefchek about 4 years ago
- 3 comments
#971 - Eq and taxon bugs
Pull Request -
State: closed - Opened by kshefchek about 4 years ago
- 1 comment
#970 - omim.ttl has a broken dc:description declaration (illegal punning)
Issue -
State: closed - Opened by matentzn about 4 years ago
- 6 comments
#969 - omim.ttl has multiple labels on classes
Issue -
State: open - Opened by matentzn about 4 years ago
- 3 comments
#968 - Globally replace the 'dc:' namespace with the 'dcterms:' namespace
Pull Request -
State: closed - Opened by TomConlin about 4 years ago
#967 - Curie without reference in ucscbands
Issue -
State: open - Opened by kshefchek about 4 years ago
#966 - OrphaNumber now Orphacode?
Issue -
State: closed - Opened by drseb about 4 years ago
- 12 comments
#965 - typo
Pull Request -
State: closed - Opened by TomConlin about 4 years ago
#964 - NCBI OMIM disease as gene fix
Pull Request -
State: closed - Opened by TomConlin about 4 years ago
#963 - ClinVar: two Monarch associations are missing OBAN:association_has_predicate
Issue -
State: open - Opened by TomConlin about 4 years ago
#962 - Jenkinsfile & misc comment
Pull Request -
State: closed - Opened by TomConlin about 4 years ago
#961 - Diseases which are also Genes
Issue -
State: closed - Opened by rgb4268 over 4 years ago
- 9 comments
#960 - basic color legend on graphviz diff files
Pull Request -
State: closed - Opened by TomConlin about 4 years ago
#959 - InterPro curie for GO
Pull Request -
State: closed - Opened by TomConlin about 4 years ago
- 5 comments
#958 - Jenkinsfile lowercase 'Stage'
Pull Request -
State: closed - Opened by TomConlin about 4 years ago
#957 - hodge-podge
Pull Request -
State: closed - Opened by TomConlin about 4 years ago
#956 - Clinvar & incidentals
Pull Request -
State: closed - Opened by TomConlin about 4 years ago
#955 - Add biolink category association types
Issue -
State: open - Opened by kshefchek about 4 years ago
#954 - omim dipper for mondo missing some classes
Issue -
State: closed - Opened by cmungall about 4 years ago
- 1 comment
#953 - Update rdflib to version 5
Pull Request -
State: closed - Opened by kshefchek about 4 years ago
- 1 comment
#952 - Get Mondo curies from ClinVar ingest
Issue -
State: closed - Opened by kshefchek about 4 years ago
#951 - Some ClinVar variants mistyped as compound heterozygous
Issue -
State: open - Opened by kshefchek about 4 years ago
Labels: clinvar
#950 - robot and arq pipeline to infer bl categories
Pull Request -
State: closed - Opened by kshefchek about 4 years ago
- 1 comment
#949 - set ontobio to 1.18.1
Pull Request -
State: closed - Opened by kshefchek about 4 years ago
- 1 comment
#948 - ZFINSlim standard refactor for columns
Pull Request -
State: closed - Opened by TomConlin about 4 years ago
#936 - AnimalQTL BT
Issue -
State: closed - Opened by TomConlin over 4 years ago
- 1 comment
#934 - Orphanet
Issue -
State: closed - Opened by TomConlin over 4 years ago
- 3 comments
#929 - Emma ingest question
Issue -
State: closed - Opened by matentzn over 4 years ago
- 6 comments
#921 - Missing OMIMPS subClassOfs in omim ttl?
Issue -
State: closed - Opened by cmungall over 4 years ago
- 7 comments
#911 - FlyBase: skip derived_pheno_manifest in parsing allele phenotype association file
Pull Request -
State: closed - Opened by kshefchek over 4 years ago
- 2 comments
#910 - Flybase ingest incorrectly parses allele to phenotype lines without an anatomical or GO term
Issue -
State: closed - Opened by kshefchek over 4 years ago
#848 - Fix 'is biomarker for' relationship by either renaming it or removing it when not appropriate
Issue -
State: open - Opened by pnrobinson about 5 years ago
- 4 comments
#833 - Use obo foundry unique label in ingests of species-specific resources
Issue -
State: open - Opened by cmungall almost 5 years ago
- 1 comment
#746 - injecting subject/object categories
Pull Request -
State: closed - Opened by cmungall over 5 years ago
- 22 comments
#745 - Dipper should categorize entities using biolink during ingest
Issue -
State: closed - Opened by cmungall over 5 years ago
- 7 comments
#601 - Add Pharos as a Source in Monarch
Issue -
State: open - Opened by TudorOprea about 6 years ago
Labels: ADD-SOURCE
#569 - Fix RGD ingest
Issue -
State: open - Opened by kshefchek over 6 years ago
- 2 comments
#547 - Pull in drug response phenotypes and protective variants from ClinVar
Issue -
State: open - Opened by kshefchek almost 7 years ago
- 1 comment
#541 - odd identifier to protein showing up for NCBI gene
Issue -
State: open - Opened by selewis almost 7 years ago
- 7 comments
Labels: bug, human, identifiers
#519 - Gene - Variant mixups in mouse data
Issue -
State: open - Opened by kshefchek about 7 years ago
- 1 comment
Labels: equivalence-bug
#459 - Clinvar introduced new elements for 'CompoundHeterozygote'
Issue -
State: closed - Opened by TomConlin over 7 years ago
- 11 comments
Labels: parsers, test, clinvar, modeling, refactor, UPDATE-SOURCE
#454 - Temporal ordering of phenotypes in both the curated data and algorithms
Issue -
State: open - Opened by jmcmurry over 7 years ago
- 14 comments
Labels: R24
#439 - Update Source: ClinVar - Refine evidence/provenance metadata
Issue -
State: open - Opened by mbrush over 7 years ago
- 2 comments
Labels: UPDATE-SOURCE
#381 - Add links to additional top-level documentation in README
Issue -
State: open - Opened by cmungall almost 8 years ago
#355 - Wrong IRI for Fanconi Renotubular Syndrome?
Issue -
State: closed - Opened by jmcmurry about 8 years ago
- 3 comments
Labels: identifiers
#323 - Ingest FISH-Figure links in ZFIN evidence model
Issue -
State: open - Opened by mbrush over 8 years ago
- 1 comment
Labels: zfin
#319 - Determine differences between ClinVar XML and tab delimited data sets
Issue -
State: open - Opened by kshefchek over 8 years ago
Labels: clinvar
#269 - Merging equivalent Associations in SciGraph
Issue -
State: open - Opened by mbrush over 8 years ago
- 8 comments
Labels: identifiers
#242 - Refine content and use of the curie-map.yml for identifiers site-wide
Issue -
State: open - Opened by jmcmurry over 8 years ago
- 4 comments
Labels: identifiers
#226 - fix omia genes that (wrongly) point to ncbigene
Issue -
State: open - Opened by nlwashington almost 9 years ago
- 5 comments
Labels: bug, identifiers
#221 - Determine approach for categorizing models
Issue -
State: closed - Opened by kshefchek almost 9 years ago
- 2 comments
#102 - syntenic and homologous region
Issue -
State: open - Opened by nlwashington over 9 years ago
- 2 comments
Labels: modeling
#40 - :hasSubject vs RDF[subject]
Issue -
State: closed - Opened by nlwashington over 9 years ago
- 17 comments
Labels: question, refactor
#31 - Bring antibody model into import chain #639
Issue -
State: closed - Opened by mellybelly over 9 years ago
Labels: enhancement, modeling
#30 - Bring in antibody data from MGI
Issue -
State: closed - Opened by mellybelly over 9 years ago
- 1 comment
Labels: data, mgi, mouse, identifiers
#23 - tests for W3C-dataset description compliance
Issue -
State: closed - Opened by nlwashington over 9 years ago
Labels: enhancement, test, dataset
#22 - extend provenance/dataset descriptions
Issue -
State: closed - Opened by nlwashington over 9 years ago
- 9 comments
Labels: enhancement, dataset, identifiers