Ecosyste.ms: Issues

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GitHub / microbiomedata/metadata-for-user-facility-template-transformations issues and pull requests

#52 - EMSL Metadata isn't mapping

Issue - State: open - Opened by mslarae13 21 days ago - 2 comments
Labels: bug

#51 - Update README.md

Pull Request - State: closed - Opened by mslarae13 21 days ago

#50 - Update JGI MG and MT columns

Pull Request - State: closed - Opened by cristina-stonepedraza 24 days ago

#50 - Update JGI MG and MT columns

Pull Request - State: closed - Opened by cristina-stonepedraza 24 days ago

#49 - placeholder ticket for changes to MUTTS based on new L7 JGI metagenome metadata template

Issue - State: open - Opened by aclum 3 months ago - 8 comments
Labels: enhancement

#48 - Add unit tests to methods in codebase

Issue - State: open - Opened by sujaypatil96 29 days ago

#48 - Add unit tests to methods in codebase

Issue - State: open - Opened by sujaypatil96 29 days ago

#47 - Better package bundling of code in MUTTs repo

Issue - State: open - Opened by sujaypatil96 29 days ago

#47 - Better package bundling of code in MUTTs repo

Issue - State: open - Opened by sujaypatil96 29 days ago

#46 - Automated documentation generation using `mkdocs` and GitHub Actions

Issue - State: open - Opened by sujaypatil96 29 days ago
Labels: DevOps

#46 - Automated documentation generation using `mkdocs` and GitHub Actions

Issue - State: open - Opened by sujaypatil96 29 days ago
Labels: DevOps

#45 - Resolve super issue #19: Updates to MUTTs for EMSL export

Pull Request - State: closed - Opened by Natalie-Winans about 1 month ago

#44 - Update JGI Column Order (cols L and M data)

Pull Request - State: closed - Opened by cristina-stonepedraza about 1 month ago

#44 - Update JGI Column Order (cols L and M data)

Pull Request - State: closed - Opened by cristina-stonepedraza about 1 month ago

#43 - Address jgi_mg/jgi_mt data collection bugs (date and depth)

Pull Request - State: closed - Opened by cristina-stonepedraza about 2 months ago - 2 comments

#42 - EMSL metadata mapper is failing?

Issue - State: closed - Opened by mslarae13 6 months ago - 3 comments
Labels: bug

#41 - update readme for MUTTs

Pull Request - State: closed - Opened by mslarae13 7 months ago - 3 comments

#38 - Flip flop columns M and L so plate label is first in export

Issue - State: closed - Opened by mslarae13 7 months ago - 2 comments

#37 - Implement use of bearer token authentication system for `nmdc-server` API

Pull Request - State: closed - Opened by sujaypatil96 7 months ago - 1 comment

#36 - rename `--unique-field` to `--sample-id-field`?

Issue - State: closed - Opened by turbomam 8 months ago - 4 comments

#33 - rename input files directry to somethign like `configuration/`

Issue - State: open - Opened by turbomam 8 months ago - 1 comment

#32 - MUTTs updates super issue

Issue - State: closed - Opened by mslarae13 8 months ago - 1 comment

#31 - suggested updates to the documentation

Issue - State: closed - Opened by mslarae13 10 months ago - 2 comments

#30 - source_mat_id is no longer required

Issue - State: closed - Opened by mslarae13 10 months ago - 2 comments

#29 - test for Christa

Issue - State: closed - Opened by aclum over 1 year ago - 1 comment

#28 - Collection Month

Issue - State: closed - Opened by mslarae13 over 1 year ago - 5 comments

#27 - sample collection device is missing

Issue - State: open - Opened by mslarae13 over 1 year ago

#26 - sample collection method is missing

Issue - State: open - Opened by mslarae13 over 1 year ago

#25 - sample_process missing

Issue - State: open - Opened by mslarae13 over 1 year ago

#24 - Sample storage conditions missing

Issue - State: open - Opened by mslarae13 over 1 year ago - 1 comment

#23 - EMSL shipped sample size missing

Issue - State: open - Opened by mslarae13 over 1 year ago - 1 comment

#21 - analysis type is formatted incorrectly

Issue - State: open - Opened by mslarae13 over 1 year ago - 3 comments
Labels: backlog

#20 - GUID needs split source and ID

Issue - State: closed - Opened by mslarae13 over 1 year ago - 1 comment

#19 - Super Issue: Updates to MUTTS for EMSL export

Issue - State: closed - Opened by mslarae13 over 1 year ago - 2 comments

#18 - JGI column order must match their template

Issue - State: closed - Opened by mslarae13 over 1 year ago - 3 comments

#17 - Does Month need to be written out? Is the digit ok?

Issue - State: closed - Opened by mslarae13 over 1 year ago - 2 comments

#16 - Will 'Biosafety Material Category' ever change?

Issue - State: open - Opened by mslarae13 over 1 year ago - 5 comments

#15 - Does Column order matter for JGI

Issue - State: closed - Opened by mslarae13 over 1 year ago - 2 comments

#14 - Isotope label enumeration doesn't work with existing NMDC isotope slot

Issue - State: open - Opened by mslarae13 over 1 year ago - 3 comments
Labels: backlog

#13 - Country only for JGI

Issue - State: closed - Opened by mslarae13 over 1 year ago - 1 comment

#12 - Update Maximum depth for JGI export

Issue - State: closed - Opened by mslarae13 over 1 year ago - 1 comment

#11 - Update Depth in JGI exportt

Issue - State: closed - Opened by mslarae13 over 1 year ago - 2 comments

#10 - Update Longitude in JGI export

Issue - State: closed - Opened by mslarae13 over 1 year ago - 1 comment

#9 - Update Latitude for JGI export

Issue - State: closed - Opened by mslarae13 over 1 year ago - 1 comment

#8 - Update Collection Day for JGI export

Issue - State: closed - Opened by mslarae13 over 1 year ago - 1 comment

#7 - Update Collection Year for JGI export

Issue - State: closed - Opened by mslarae13 over 1 year ago - 1 comment

#6 - Update Was sample DNAse treated? column for JGI export

Issue - State: closed - Opened by mslarae13 over 1 year ago - 7 comments

#5 - Super Issue: Updates to MUTTS for JGI Metagenomics

Issue - State: closed - Opened by mslarae13 over 1 year ago - 2 comments

#4 - Delete ~$EMSL_Metadata_Example.xlsm

Pull Request - State: closed - Opened by cmungall almost 2 years ago

#3 - header vs 1,2,3 keys in JSON config file is confusing

Issue - State: closed - Opened by turbomam almost 2 years ago - 2 comments

#2 - combine the TSV and JSON configuration files into one of any format

Issue - State: closed - Opened by turbomam almost 2 years ago - 2 comments

#1 - needs a better title

Issue - State: closed - Opened by turbomam almost 2 years ago - 3 comments