mbhall88/rasusa issues and pull requests

#76 - Subsampling an alignment file results in "user-provided comparison function does not correctly implement a total order" error

Issue - State: open - Opened by tinyheero about 1 month ago - 1 comment

#75 - does downsampling with rasusa preserve regions of copy number variation?

Issue - State: closed - Opened by eesiribloom about 2 months ago - 2 comments

#74 - chore(main): release 2.1.0

Pull Request - State: closed - Opened by mbhall88 6 months ago - 1 comment
Labels: autorelease: tagged

#73 - feat: log seed and add program header entry

Pull Request - State: closed - Opened by mbhall88 6 months ago

#72 - chore: fix typo in README.md

Pull Request - State: closed - Opened by gbouras13 6 months ago - 1 comment

#71 - chore(main): release 2.0.0

Pull Request - State: closed - Opened by mbhall88 9 months ago - 1 comment
Labels: autorelease: tagged

#70 - Error when using --output twice

Issue - State: closed - Opened by pmielle 9 months ago - 2 comments

#69 - Error

Issue - State: closed - Opened by nbenzakour 9 months ago - 1 comment

#68 - chore(main): release 1.0.0

Pull Request - State: closed - Opened by mbhall88 9 months ago - 1 comment
Labels: autorelease: tagged

#67 - feat: add ability to subsample alignments

Pull Request - State: closed - Opened by mbhall88 10 months ago

#66 - chore(main): release 0.8.0

Pull Request - State: closed - Opened by mbhall88 about 1 year ago - 1 comment
Labels: autorelease: tagged

#65 - Error: unable to gather read lengths for the first input file

Issue - State: closed - Opened by npdungca over 1 year ago - 2 comments

#64 - Generating only half of the target depth

Issue - State: closed - Opened by npdungca over 1 year ago - 6 comments

#63 - won't detect input file

Issue - State: closed - Opened by rmormando over 1 year ago - 1 comment

#62 - Question: there is a way to start from a bam file instead of a fastq?

Issue - State: closed - Opened by leone93 over 1 year ago - 1 comment

#61 - Bump bzip2 from 0.4.3 to 0.4.4

Pull Request - State: closed - Opened by dependabot[bot] about 2 years ago
Labels: dependencies

#60 - illumina read input error

Issue - State: closed - Opened by IndreNav about 2 years ago - 2 comments

#59 - Random sampling based on bases for the metagenomic dataset

Issue - State: closed - Opened by AnupamGautam over 2 years ago - 1 comment

#58 - Add number and fraction options

Pull Request - State: closed - Opened by mbhall88 over 2 years ago

#57 - Bump rgb from 0.8.14 to 0.8.32

Pull Request - State: closed - Opened by dependabot[bot] over 2 years ago - 2 comments
Labels: dependencies

#56 - Does rasusa outputs reads that still cover the entire original genome?

Issue - State: closed - Opened by MostafaYA over 2 years ago - 1 comment

#55 - Multi-threading approach

Issue - State: open - Opened by Teklu67 almost 3 years ago - 8 comments
Labels: enhancement, help wanted

#38 - JOSS paper

Pull Request - State: closed - Opened by mbhall88 about 3 years ago

#37 - Feature: Min/max coverage threshold

Issue - State: closed - Opened by bbalog87 about 3 years ago - 2 comments

#36 - Suggestion: Raise warning when desired level of coverage is not possible

Issue - State: closed - Opened by k3yavi about 3 years ago - 1 comment

#35 - Docker image issue

Issue - State: closed - Opened by genignored about 3 years ago - 9 comments

#34 - Add number and fraction options

Issue - State: closed - Opened by mbhall88 over 3 years ago
Labels: enhancement

#33 - Allow genome size to take a FASTA/Q index file

Pull Request - State: closed - Opened by mbhall88 over 3 years ago

#32 - Add option to explicitly set the target number of bases

Pull Request - State: closed - Opened by mbhall88 over 3 years ago

#31 - Calculate genome size from an index file

Issue - State: closed - Opened by mbhall88 over 3 years ago - 1 comment
Labels: enhancement

#30 - Input parameter for number of bases in addition to coverage and genome size

Issue - State: closed - Opened by tomazberisa over 3 years ago - 6 comments
Labels: enhancement

#29 - Restore output file compression

Pull Request - State: closed - Opened by mbhall88 over 3 years ago

#28 - Speedup by replace `HashSet` by a `Vec<bool>`

Pull Request - State: closed - Opened by natir over 3 years ago - 3 comments

#27 - Compress output when requested

Issue - State: closed - Opened by mbhall88 over 3 years ago - 5 comments
Labels: bug

#26 - `HashSet` is slow

Issue - State: closed - Opened by natir over 3 years ago - 3 comments
Labels: enhancement

#25 - Suggestion: replace needletail by noodles and niffler

Issue - State: closed - Opened by natir over 3 years ago - 2 comments

#24 - Merge fix for #22 onto master

Pull Request - State: closed - Opened by mbhall88 over 3 years ago

#23 - Change fastx parsing library to needletail

Pull Request - State: closed - Opened by mbhall88 over 3 years ago

#22 - Lower than expected coverage for illumina paired end reads

Issue - State: closed - Opened by ilyavs over 3 years ago - 9 comments
Labels: enhancement

#21 - Modernise error handling

Pull Request - State: closed - Opened by mbhall88 over 4 years ago

#20 - Multi-threading approach implementation

Issue - State: closed - Opened by camilogarciabotero over 4 years ago - 3 comments

#19 - Finer control over coverage

Issue - State: closed - Opened by nirajmehta96 over 4 years ago - 2 comments
Labels: enhancement

#18 - add Illumina support

Pull Request - State: closed - Opened by mbhall88 almost 5 years ago

#17 - Support for subsampling alignment to uniform coverage

Issue - State: closed - Opened by IsmailM about 5 years ago - 5 comments
Labels: enhancement

#16 - Relationship to filtlong

Issue - State: closed - Opened by tseemann about 5 years ago - 2 comments

#15 - Support for paired-end reads?

Issue - State: closed - Opened by tseemann about 5 years ago - 5 comments
Labels: enhancement

#14 - Estimate genome size automatically

Issue - State: closed - Opened by tseemann about 5 years ago - 9 comments
Labels: enhancement

#13 - add homebrew recipe

Issue - State: closed - Opened by mbhall88 about 5 years ago - 2 comments

#12 - add singularity option

Issue - State: closed - Opened by mbhall88 about 5 years ago