Ecosyste.ms: Issues
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GitHub / ltla/scuttle issues and pull requests
#32 - downsampleMatrix returns sparse when it should return dense result
Issue -
State: open - Opened by mschubert about 1 month ago
- 3 comments
#31 - Resync the package with the most recent developments in packages SparseArray and DelayedArray.
Pull Request -
State: closed - Opened by hpages 4 months ago
- 1 comment
#30 - Adding subsets used to SCE
Pull Request -
State: closed - Opened by llrs 4 months ago
- 4 comments
#29 - Adding subsets from addPerCellQC to rowData
Issue -
State: closed - Opened by llrs 4 months ago
- 2 comments
#28 - discrepancy between addPerCellQC's sum & colSums
Issue -
State: closed - Opened by HelenaLC 5 months ago
- 2 comments
#27 - empty heatmap (aggregateAcrossCells)
Issue -
State: closed - Opened by Elena983 9 months ago
- 5 comments
#26 - Error in evaluating the argument 'x' in selecting a method for function 'colnames': subscript out of bounds
Issue -
State: open - Opened by RunyuXia 11 months ago
- 1 comment
#25 - summarizeAssayByGroup output has NULL colnames when ids is a DataFrame
Issue -
State: closed - Opened by alanocallaghan about 1 year ago
- 2 comments
#24 - calculateAverage() throw error 'rowMeans' : size factors should be positive
Issue -
State: open - Opened by boutrys over 1 year ago
- 1 comment
#23 - Fix typo in docs
Pull Request -
State: closed - Opened by PeteHaitch over 1 year ago
#22 - aggregateAcrossCells with `statistics = "median"` produces warnings
Issue -
State: closed - Opened by nilseling over 1 year ago
- 3 comments
#21 - Adding alias to exprs_values argument
Issue -
State: closed - Opened by antagomir over 1 year ago
- 3 comments
#20 - Factors in subset2index
Pull Request -
State: closed - Opened by alanocallaghan almost 2 years ago
- 3 comments
#19 - Add swap_rownames to makePerCellDF
Pull Request -
State: closed - Opened by samuel-marsh almost 2 years ago
#18 - makePerCellDF using alt rowData Column
Issue -
State: closed - Opened by samuel-marsh almost 2 years ago
- 4 comments
#17 - aggregateAcrossCells() no longer works over multiple assays in SCE
Issue -
State: open - Opened by AnnaAMonaco about 2 years ago
- 3 comments
#16 - How to recover gene expression used for scran::pairwiseTTests()
Issue -
State: open - Opened by ewijaya over 2 years ago
- 1 comment
#15 - No. of discarded cells do not add up?
Issue -
State: open - Opened by shaln almost 3 years ago
- 1 comment
#14 - unable to install scuttle
Issue -
State: open - Opened by wonliy almost 3 years ago
- 14 comments
#13 - makePerCellTbl
Issue -
State: open - Opened by robertamezquita about 3 years ago
- 2 comments
#12 - logNormCounts - log transformation with different log base?
Issue -
State: open - Opened by JPGranizo over 3 years ago
- 3 comments
#11 - no slot of name "subdata" for this object of class "TENxMatrixSeed"
Issue -
State: open - Opened by janinemelsen over 3 years ago
- 1 comment
#10 - Error with perCellQC related to data set size: "grid elements must have a length <= .Machine$integer.max"
Issue -
State: closed - Opened by friedue over 3 years ago
- 1 comment
#9 - Size factors allowed to be zero even when positive=TRUE
Issue -
State: closed - Opened by alanocallaghan over 3 years ago
- 1 comment
#8 - Suggestion related to cluster IDs given #7
Issue -
State: closed - Opened by lcolladotor over 3 years ago
- 2 comments
#7 - What should the minimum colSums(counts) be for overcoming rescaling = 0 results?
Issue -
State: closed - Opened by lcolladotor over 3 years ago
- 4 comments
#6 - Typing out the three QC commands is a pain
Issue -
State: closed - Opened by LTLA almost 4 years ago
- 1 comment
#5 - Error: object ‘I’ is not exported by 'namespace:S4Vectors'
Issue -
State: closed - Opened by cytogil almost 4 years ago
- 3 comments
#4 - Failed to find a rowRanges() method for SingleCellExperiment objects
Issue -
State: closed - Opened by YifeiSheng almost 4 years ago
- 1 comment
#3 - Column names of perCellQCMetrics output vary depending on how use.altexps supplied
Issue -
State: closed - Opened by PeteHaitch almost 4 years ago
- 1 comment
#2 - Migrate all code to use beachmat v3 with block processing.
Pull Request -
State: closed - Opened by LTLA about 4 years ago
#1 - [REQ] Support of medians by aggregateAcrossCells()
Issue -
State: closed - Opened by HelenaLC over 4 years ago