Ecosyste.ms: Issues

An open API service for providing issue and pull request metadata for open source projects.

GitHub / lmweber/principlessta issues and pull requests

#49 - initialize imaging-based ST part

Pull Request - State: closed - Opened by HelenaLC about 2 months ago - 2 comments

#47 - render fails: questionable use of here() in analysis-steps.qmd

Issue - State: closed - Opened by vjcitn 6 months ago - 2 comments

#46 - render fails: multiple entries in ExperimentHub

Issue - State: closed - Opened by vjcitn 6 months ago - 3 comments

#45 - make SPE object

Issue - State: closed - Opened by prummer about 1 year ago - 2 comments

#44 - Spatial clustering example using BayesSpace

Issue - State: open - Opened by lmweber about 1 year ago - 1 comment

#43 - Workflow chapter using Xenium dataset

Issue - State: open - Opened by lmweber about 1 year ago - 1 comment

#42 - Workflow chapter using Visium breast cancer dataset

Issue - State: open - Opened by lmweber about 1 year ago - 2 comments

#41 - Background on technological platforms

Issue - State: closed - Opened by lmweber over 1 year ago

#40 - Ch 2: Sequencing Prep Overview Figure is Confusing

Issue - State: closed - Opened by berniejmulvey over 1 year ago - 1 comment

#38 - Small error in Ch. 12.3: PCA

Issue - State: closed - Opened by kinnaryshah about 2 years ago - 2 comments

#37 - Multiple samples / batch effects

Issue - State: open - Opened by lmweber about 2 years ago - 1 comment

#36 - More background / intro material on scientific context

Issue - State: open - Opened by lmweber about 2 years ago - 2 comments

#35 - QC metrics: mitochondrial proportion

Issue - State: closed - Opened by lmweber about 2 years ago

#34 - Editorial Suggestions of Chapter 9 Quality Control

Issue - State: open - Opened by boyiguo1 about 2 years ago - 1 comment

#33 - Reverse dependencies table

Issue - State: closed - Opened by lmweber over 2 years ago

#32 - Logcounts

Issue - State: closed - Opened by lmweber over 2 years ago

#31 - Part IDs

Issue - State: open - Opened by lmweber over 2 years ago

#30 - QC gene filtering: keep only protein-coding genes

Issue - State: open - Opened by lmweber over 2 years ago - 1 comment

#29 - Plotting with ST data (not visium)

Issue - State: closed - Opened by ZheFrench over 2 years ago - 1 comment

#28 - Fixed deploy code after encountering an error when re-deploying after…

Pull Request - State: closed - Opened by lcolladotor almost 3 years ago

#27 - spatial.libd.org is only available via http, not https

Pull Request - State: closed - Opened by lcolladotor about 3 years ago

#26 - scry deviance residuals

Issue - State: closed - Opened by lmweber about 3 years ago

#25 - Preprocessing with alevin-fry

Issue - State: closed - Opened by lmweber about 3 years ago - 1 comment

#24 - Add workflow chapter on a cancer dataset

Issue - State: closed - Opened by lmweber about 3 years ago

#23 - Set up method comparison chapters

Issue - State: closed - Opened by lmweber about 3 years ago

#22 - EBImage for image processing steps

Issue - State: closed - Opened by lmweber about 3 years ago

#21 - change link to ggspavis package

Pull Request - State: closed - Opened by sparthib about 3 years ago - 1 comment

#20 - Try to clarify flow of steps related to Loupe, SpaceRanger, VistoSeg

Issue - State: closed - Opened by lcolladotor about 3 years ago - 2 comments

#19 - Fix Heena's name on the bib file

Pull Request - State: closed - Opened by lcolladotor about 3 years ago

#16 - Update icon etc

Pull Request - State: closed - Opened by lcolladotor over 3 years ago

#15 - Add vistoseg citation

Pull Request - State: closed - Opened by lcolladotor over 3 years ago - 1 comment

#14 - Update image segmentation and Loupe chapters

Pull Request - State: closed - Opened by lcolladotor over 3 years ago - 1 comment

#13 - Update the space ranger chapter

Pull Request - State: closed - Opened by lcolladotor over 3 years ago - 1 comment

#12 - Tweak formatting; use Azure link for AnVIL-powered R package binaries

Pull Request - State: closed - Opened by lcolladotor over 3 years ago

#11 - Expand spatialLIBD workflow and resolve #3; update whole GHA setup

Pull Request - State: closed - Opened by lcolladotor over 3 years ago - 1 comment

#10 - Spaceranger 073021

Pull Request - State: closed - Opened by abspangler13 over 3 years ago - 1 comment

#9 - Changes for AnVIL workspace to be created

Pull Request - State: closed - Opened by Kayla-Morrell over 3 years ago - 4 comments

#8 - Contribution guidelines

Pull Request - State: closed - Opened by lmweber over 3 years ago

#7 - Adding loupe and spaceranger files

Pull Request - State: closed - Opened by abspangler13 over 3 years ago

#6 - Preprocessing chapters on Loupe Browser and Space Ranger

Issue - State: closed - Opened by lmweber over 3 years ago

#5 - Extend analysis chapters

Issue - State: closed - Opened by lmweber over 3 years ago

#4 - Workflow chapter - Cartana

Issue - State: closed - Opened by lmweber over 3 years ago

#3 - Workflow chapter - spatialLIBD

Issue - State: closed - Opened by lmweber over 3 years ago - 2 comments

#2 - Error trying to compile the book

Issue - State: closed - Opened by drighelli about 4 years ago

#1 - Failed to compile normalization.Rmd

Issue - State: closed - Opened by mdozmorov over 4 years ago - 6 comments