Ecosyste.ms: Issues

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GitHub / linkml/schemasheets issues and pull requests

#146 - adding lists to set_attr_via_path_accessor

Pull Request - State: open - Opened by djarecka about 1 month ago

#145 - use logging rather than printing

Pull Request - State: closed - Opened by cmungall about 2 months ago

#144 - Adding Property Graph example

Pull Request - State: closed - Opened by cmungall 2 months ago

#143 - Fixing test 121 to be valid.

Pull Request - State: closed - Opened by cmungall 2 months ago

#141 - Some existing tests generate invalid schemas

Issue - State: closed - Opened by cmungall 2 months ago

#140 - is there a plan to support definition of 'linkML.rules' ?

Issue - State: open - Opened by proccaserra 4 months ago - 2 comments

#139 - adding base_schema_path to the converter

Pull Request - State: closed - Opened by djarecka 6 months ago - 1 comment

#138 - attribute and slot usage in one schema

Issue - State: open - Opened by djarecka 8 months ago - 1 comment
Labels: enhancement

#137 - allow for usage of inner_key when list is expected

Pull Request - State: closed - Opened by djarecka 7 months ago

#136 - adding option to provide an attribute column

Pull Request - State: closed - Opened by djarecka 7 months ago

#135 - adding option to support attributes together with slots

Issue - State: closed - Opened by djarecka 7 months ago

#134 - Update class_defs.tsv

Pull Request - State: closed - Opened by cmungall 7 months ago

#133 - fixing option use_attributes: removing attributes from schema.slots

Pull Request - State: closed - Opened by djarecka 7 months ago - 2 comments

#132 - Blank permissible values for enumerations

Issue - State: open - Opened by martinwellman 7 months ago - 1 comment

#131 - using `template` to create exact mapping

Issue - State: open - Opened by djarecka 7 months ago

#130 - slots are created when using `--use-attributes`

Issue - State: closed - Opened by djarecka 8 months ago

#128 - issues with attributes column

Issue - State: closed - Opened by djarecka 8 months ago - 1 comment

#127 - add codespell workflow, config and fix some typos

Pull Request - State: closed - Opened by yarikoptic 8 months ago

#125 - Basics description

Issue - State: open - Opened by rsc3 12 months ago - 2 comments

#124 - string-ifying list elements before pasting

Pull Request - State: closed - Opened by turbomam about 1 year ago

#123 - string-ify list items before pasting

Issue - State: closed - Opened by turbomam about 1 year ago

#122 - templated all SchemaDefinition slots including settings

Pull Request - State: closed - Opened by turbomam about 1 year ago

#120 - Support schema-level settings in the metamodel

Issue - State: open - Opened by cmungall about 1 year ago

#118 - audit the names of variable added in branch `exporting-without-tsv-templ`

Issue - State: closed - Opened by turbomam about 1 year ago - 1 comment

#117 - Adding docstrings and removing unused imports

Pull Request - State: closed - Opened by cmungall about 1 year ago

#116 - Unpinning some dependencies, bumping linkml version.

Pull Request - State: closed - Opened by cmungall about 1 year ago

#115 - change `import pkg_resources` in `generate_populate.py` to `importlib`

Issue - State: open - Opened by turbomam about 1 year ago - 2 comments

#114 - infer some descriptor_rows from table_config

Pull Request - State: closed - Opened by turbomam about 1 year ago - 1 comment

#113 - Export a schemasheet from a schema with no template

Issue - State: closed - Opened by turbomam about 1 year ago - 2 comments

#112 - nested ifs, not ands for table_config scanning when exporting

Pull Request - State: closed - Opened by turbomam about 1 year ago

#111 - Provide pre-test for #109

Issue - State: closed - Opened by turbomam about 1 year ago

#110 - #109 skip Not implemented reporting for slot

Pull Request - State: closed - Opened by turbomam about 1 year ago

#109 - linkml2sheets reports `slots` isn't implemented

Issue - State: closed - Opened by turbomam about 1 year ago

#108 - no docker image available

Issue - State: open - Opened by djarecka over 1 year ago

#107 - the converter doesn't work with the gsheet example

Issue - State: open - Opened by djarecka over 1 year ago

#106 - repo missing LICENSE.md

Issue - State: open - Opened by jmckenna over 1 year ago

#104 - remove test CASE 6 and allow linkml 1.5.0

Issue - State: closed - Opened by turbomam over 1 year ago

#103 - bump linkml and bioregistry to compatible but not latest versions

Pull Request - State: closed - Opened by turbomam over 1 year ago

#102 - bump linkml and bioregistry versions

Issue - State: closed - Opened by turbomam over 1 year ago

#100 - more documentation for asserting nested values in schemasheets

Issue - State: closed - Opened by turbomam over 1 year ago - 1 comment

#98 - test_headers_CASE_6 vs 1.5.0

Pull Request - State: closed - Opened by turbomam over 1 year ago

#97 - test_headers_CASE_6 vs 1.4.11

Pull Request - State: closed - Opened by turbomam over 1 year ago

#96 - Remove CASE 6 from test_headers.py, allow linkml 1.5.0

Pull Request - State: closed - Opened by turbomam over 1 year ago

#94 - Bioregistry update

Pull Request - State: closed - Opened by turbomam over 1 year ago

#93 - bump bioregistry to 0.6.99

Issue - State: closed - Opened by turbomam over 1 year ago - 1 comment

#92 - Bump LinkML to 1.5.0

Pull Request - State: closed - Opened by turbomam over 1 year ago

#91 - bump linkml to 1.5.0

Issue - State: closed - Opened by turbomam over 1 year ago - 2 comments

#90 - poetry 1.3 in pypi action

Pull Request - State: closed - Opened by turbomam over 1 year ago

#89 - Update version of linkml dependency

Pull Request - State: closed - Opened by turbomam over 1 year ago

#88 - update linkml dependency from ~1.3 to ^1.4

Issue - State: closed - Opened by turbomam over 1 year ago

#87 - chore: update linkml/jinja2 dependencies

Pull Request - State: closed - Opened by noelmcloughlin over 1 year ago - 1 comment

#86 - Additional options: use-attributes and table-config-path

Pull Request - State: closed - Opened by cmungall almost 2 years ago

#85 - Add ignore rows feature

Issue - State: open - Opened by turbomam almost 2 years ago - 2 comments
Labels: good first issue

#84 - Does the documentation mention that Google Sheets tab names have some constraints?

Issue - State: open - Opened by turbomam almost 2 years ago
Labels: documentation

#83 - tests corresponding to MIXS workflow

Issue - State: closed - Opened by turbomam almost 2 years ago - 1 comment

#82 - update dependency

Pull Request - State: closed - Opened by sierra-moxon almost 2 years ago

#81 - some shortcut meanings may be wrong

Issue - State: open - Opened by turbomam about 2 years ago
Labels: bug

#80 - Adding documentation on data dictionaries

Pull Request - State: closed - Opened by cmungall about 2 years ago

#79 - Adding correct normalization for inner keys, fixes #67

Pull Request - State: closed - Opened by turbomam about 2 years ago

#78 - Issue 76 schema template

Pull Request - State: closed - Opened by turbomam about 2 years ago

#77 - Test and fix for #70, linkmk2sheets for prefixes

Pull Request - State: closed - Opened by cmungall about 2 years ago

#76 - linkml2sheets won't populate a schema template

Issue - State: open - Opened by turbomam about 2 years ago - 1 comment

#74 - Fixing ambiguity with type fields and bumping linkml version

Pull Request - State: closed - Opened by cmungall about 2 years ago

#73 - Fixing bug where empty inner objects were not pre-populated. Fixes #72

Pull Request - State: closed - Opened by cmungall about 2 years ago

#72 - allow for roundtripping of structured_patterns using inner keys

Issue - State: closed - Opened by cmungall about 2 years ago

#71 - Null change to test test suite

Pull Request - State: closed - Opened by cmungall about 2 years ago

#69 - linkml2sheets doesn't work when given a directory of templates

Issue - State: closed - Opened by turbomam about 2 years ago - 3 comments

#68 - three tests failing in main

Issue - State: closed - Opened by turbomam about 2 years ago - 1 comment

#66 - put structured_pattern values from sheets2linkml in the syntax sub-slot

Issue - State: closed - Opened by turbomam about 2 years ago - 1 comment
Labels: enhancement

#65 - add a column for directing rows to different YAML files

Issue - State: closed - Opened by turbomam about 2 years ago - 2 comments

#63 - fixing pipe-separated whitespace bug in schemamaker

Pull Request - State: closed - Opened by turbomam about 2 years ago

#62 - some linkml2sheet annotations consist of only whitespace and pipes

Issue - State: closed - Opened by turbomam about 2 years ago - 1 comment

#61 - Fixed handling of inner_key in annotations for both import and export. Fixes #59

Pull Request - State: closed - Opened by cmungall about 2 years ago - 1 comment

#60 - bump bioregistry version

Pull Request - State: closed - Opened by cmungall about 2 years ago - 4 comments

#59 - linkml2sheets not picking up on annotation's inner_keys

Issue - State: closed - Opened by turbomam about 2 years ago

#58 - Wizard for creating linkml2sheets templates

Pull Request - State: closed - Opened by turbomam about 2 years ago - 6 comments

#57 - Adding support for google sheets

Pull Request - State: closed - Opened by cmungall about 2 years ago

#56 - Delete schemaview_vs_examples.py

Pull Request - State: closed - Opened by cmungall about 2 years ago

#55 - AutoDocs using Github Actions

Pull Request - State: closed - Opened by hrshdhgd about 2 years ago

#54 - Add action to auto-publish docs

Issue - State: closed - Opened by cmungall about 2 years ago

#53 - docs and tests

Pull Request - State: closed - Opened by cmungall about 2 years ago

#52 - Examples should roundtrip

Issue - State: closed - Opened by cmungall about 2 years ago

#51 - Add default template and ability to derive templates

Issue - State: open - Opened by cmungall about 2 years ago - 1 comment

#50 - Extending schema_exporter to handle enums and types

Pull Request - State: closed - Opened by cmungall about 2 years ago

#49 - Reorganize package structure

Issue - State: open - Opened by cmungall about 2 years ago - 1 comment

#48 - Remove schemaview_vs_example.py

Issue - State: closed - Opened by cmungall about 2 years ago

#47 - mkdoc uses wrong branch name for "Edit" link

Issue - State: closed - Opened by VladimirAlexiev over 2 years ago - 1 comment

#46 - fixes #45

Pull Request - State: closed - Opened by VladimirAlexiev over 2 years ago - 1 comment